genome.fa.s8319.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008319.1 Hibiscus syriacus cultivar Beakdansim tig00111022_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4819703

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  21  of  21  ( 2487 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4631173--4631259	36	2.4	37	88	3	131	14	22	10	51	1.73
4631245--4631280	3	12.0	3	100	0	72	0	33	0	66	0.92
4631263--4631391	39	3.3	39	86	2	179	16	22	8	52	1.70
4631585--4631617	2	16.5	2	100	0	66	0	48	0	51	1.00
4644060--4644101	4	10.5	4	89	0	66	23	4	26	45	1.73
4644777--4644812	18	2.0	18	88	0	54	16	44	25	13	1.85
4644813--4644845	16	2.1	16	94	0	57	24	12	30	33	1.91
4651082--4651125	22	2.0	22	95	0	79	43	18	0	38	1.50
4655322--4655352	16	1.9	16	93	0	53	25	6	0	67	1.14
4655233--4655474	132	1.8	135	81	4	312	23	15	8	52	1.70
4661040--4661074	15	2.2	16	90	5	54	28	0	2	68	1.04
4667212--4667272	27	2.3	27	82	5	79	54	14	1	29	1.50
4667354--4667443	28	3.1	28	75	10	83	53	21	1	24	1.53
4667198--4667488	159	1.9	150	85	9	388	47	15	5	31	1.68
4667650--4667711	28	2.2	29	82	8	74	22	3	20	53	1.60
4675167--4675212	14	3.1	14	78	9	56	73	6	0	19	1.04
4675339--4675577	131	1.8	130	84	7	324	56	6	9	28	1.56
4675584--4675658	34	2.1	36	80	9	84	60	1	6	32	1.31
4676984--4677542	105	5.3	105	94	1	971	23	17	25	33	1.97
4678313--4678354	13	3.2	13	93	0	66	2	2	4	90	0.60
4687760--4687803	20	2.2	20	88	8	63	75	2	4	18	1.09
4689091--4689148	17	3.5	17	76	6	57	72	6	0	20	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4689248--4689492	133	1.8	135	83	6	329	56	6	8	28	1.53
4689286--4689586	133	2.3	130	79	11	317	56	4	8	30	1.51
4689559--4689616	21	2.8	21	79	12	66	60	0	6	32	1.23
4693174--4693203	15	2.0	15	100	0	60	40	26	6	26	1.81
4698541--4698601	30	2.0	31	93	3	106	37	32	1	27	1.67
4704181--4704227	20	2.2	21	78	17	53	44	6	12	36	1.68
4708240--4708361	61	2.0	61	93	0	208	37	18	17	27	1.92
4711462--4711500	2	19.5	2	94	0	69	46	0	0	53	1.00
4714675--4714724	2	25.0	2	100	0	100	50	0	0	50	1.00
4715764--4715802	21	1.9	21	89	5	62	48	10	7	33	1.66
4724028--4724057	2	15.0	2	100	0	60	50	0	0	50	1.00
4724743--4724879	43	3.2	44	78	13	133	28	18	24	27	1.98
4725311--4725370	21	2.9	21	87	0	75	1	41	16	40	1.58
4725324--4725409	21	4.1	21	81	3	93	2	41	18	37	1.63
4735136--4735296	41	4.0	41	84	7	213	30	19	14	34	1.92
4735137--4735295	82	2.0	81	92	3	266	30	20	14	35	1.92
4735325--4735458	42	3.2	42	77	10	157	21	23	21	32	1.98
4736652--4736683	16	2.1	15	94	5	55	50	3	46	0	1.17
4737495--4737562	21	3.2	21	93	0	118	27	25	25	22	1.99
4739311--4739367	28	2.0	29	83	10	73	54	0	7	38	1.28
4739396--4739459	21	2.8	23	73	22	62	64	1	3	31	1.19
4740934--4741708	105	7.4	105	97	0	1451	22	18	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4742464--4742507	8	5.6	8	81	5	54	0	15	2	81	0.78
4742457--4742507	10	4.9	10	80	7	57	0	17	1	80	0.81
4742457--4742508	21	2.5	22	84	9	72	0	19	1	78	0.84
4742553--4742586	15	2.3	15	90	5	52	0	0	11	88	0.52
4749891--4750667	387	2.0	387	98	0	1509	19	28	18	33	1.96
4752288--4752321	10	3.4	10	87	0	50	79	0	2	17	0.86
4752287--4752320	16	2.1	16	88	0	50	82	0	2	14	0.79
4753402--4753431	11	2.7	11	94	0	51	56	6	10	26	1.57
4753638--4753701	21	2.8	23	73	22	62	64	1	3	31	1.19
4756160--4756192	14	2.4	14	100	0	66	42	9	9	39	1.68
4757659--4757691	14	2.4	14	94	0	57	30	0	9	60	1.27
4767434--4767511	27	3.1	27	60	30	64	34	11	11	42	1.77
4767433--4767526	47	2.0	47	97	0	179	32	11	12	42	1.79
4776085--4776161	31	2.5	31	89	0	118	45	9	2	42	1.49
4777616--4777645	2	15.5	2	93	6	53	50	0	0	50	1.00
4784127--4784178	20	2.6	20	90	0	86	38	25	13	23	1.91
4784234--4784427	20	9.6	20	76	8	76	35	25	19	19	1.95
4784230--4784427	40	5.0	39	81	4	200	35	26	19	19	1.95
4784234--4784426	60	3.2	60	83	0	251	35	25	19	19	1.95
4784808--4784878	33	2.2	33	92	0	115	11	22	18	47	1.80
4784999--4785053	14	3.6	14	73	21	56	41	23	25	9	1.83
4784999--4785069	33	2.2	33	89	0	106	42	26	21	9	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4785065--4785162	19	5.7	19	70	22	81	10	24	22	42	1.84
4785087--4785176	14	5.7	14	74	23	81	8	25	23	42	1.83
4785070--4785184	33	3.5	33	95	0	212	9	24	20	45	1.81
4786883--4787540	185	3.5	186	99	0	1293	22	12	18	46	1.83
4786883--4787540	93	7.1	93	99	0	1293	22	12	18	46	1.83
4786883--4787540	278	2.4	278	99	0	1307	22	12	18	46	1.83
4787584--4787712	19	7.3	19	75	17	125	45	28	17	8	1.77
4787620--4787712	33	2.8	32	91	4	150	46	27	18	7	1.76
4787584--4787712	52	2.5	52	74	14	140	45	28	17	8	1.77
4787708--4787826	19	6.8	18	74	19	110	8	19	25	47	1.77
4787730--4787786	14	3.7	14	72	20	51	7	19	28	45	1.76
4787713--4787805	33	2.8	33	91	0	159	8	19	24	47	1.77
4787708--4787842	19	7.6	19	73	20	105	9	18	25	45	1.80
4789748--4789783	14	2.6	14	95	0	63	33	0	22	44	1.53
4789890--4789991	19	5.6	19	84	13	151	44	17	23	14	1.86
4790020--4790345	19	18.4	19	80	16	407	14	20	18	47	1.83
4789998--4790317	52	6.0	52	89	7	434	14	21	17	46	1.83
4789998--4790278	71	4.0	71	86	10	430	14	20	17	46	1.83
4790110--4790345	33	6.8	33	76	14	192	13	20	18	47	1.83
4792815--4792861	24	2.0	24	87	8	69	38	21	14	25	1.92
4793544--4793912	20	18.5	20	87	4	467	20	19	26	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21

The End!