genome.fa.s8319.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008319.1 Hibiscus syriacus cultivar Beakdansim tig00111022_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4819703

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  17  of  21  ( 2487 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3600592--3600616	2	12.5	2	100	0	50	0	48	0	52	1.00
3600616--3600654	2	19.5	2	100	0	78	48	0	0	51	1.00
3604657--3604781	31	4.0	31	92	2	198	20	18	23	38	1.93
3608769--3608879	31	3.6	31	92	2	179	20	18	21	38	1.93
3642818--3642890	30	2.4	30	97	0	137	30	24	21	23	1.99
3642818--3642915	30	3.2	30	88	1	124	32	25	20	21	1.97
3643890--3643940	19	2.7	19	100	0	102	23	25	21	29	1.99
3650967--3651033	22	3.0	22	95	2	116	25	28	26	19	1.99
3651677--3651728	2	26.0	2	100	0	104	50	0	0	50	1.00
3652744--3652788	21	2.1	21	87	0	63	15	24	28	31	1.96
3654742--3654794	21	2.5	22	84	6	74	22	24	20	32	1.98
3654803--3654868	20	3.4	20	79	12	66	27	27	16	28	1.97
3655930--3655966	14	2.5	15	86	8	58	54	21	18	5	1.64
3658001--3658035	18	1.9	18	94	0	61	54	25	2	17	1.57
3658095--3658364	140	1.9	140	98	0	522	28	13	15	42	1.84
3658335--3658612	20	14.8	20	74	14	234	33	21	18	26	1.97
3658343--3658499	54	2.9	54	87	1	235	34	24	17	23	1.96
3658397--3658613	94	2.3	94	86	1	292	32	21	19	26	1.97
3658335--3658662	74	4.4	74	78	10	323	33	20	18	27	1.96
3658656--3658694	20	2.0	20	89	0	60	5	23	20	51	1.67
3660254--3660365	42	2.7	42	72	5	109	24	18	35	21	1.95
3660919--3660973	20	2.8	20	80	0	65	29	16	23	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3661157--3661204	20	2.4	20	89	6	71	31	27	22	18	1.97
3660939--3661512	308	1.9	308	94	1	1017	36	18	16	28	1.93
3661465--3661552	20	4.4	20	88	0	122	37	26	18	18	1.93
3661595--3661642	20	2.4	20	89	0	69	16	20	27	35	1.94
3661790--3661839	18	2.8	18	93	0	91	40	8	20	32	1.81
3663563--3663603	20	2.0	20	100	0	82	56	14	14	14	1.69
3663569--3663639	20	3.5	20	82	3	63	42	22	18	16	1.89
3664032--3664088	22	2.6	22	80	0	69	17	21	40	21	1.92
3664254--3664391	20	6.9	20	88	0	186	24	18	26	30	1.98
3671194--3671237	20	2.2	20	100	0	88	27	25	18	29	1.98
3674562--3674596	4	8.8	4	100	0	70	77	0	22	0	0.78
3674967--3675044	31	2.5	31	89	0	111	23	24	14	38	1.91
3678392--3678423	16	2.0	16	93	0	55	46	0	3	50	1.17
3678969--3679216	130	1.9	130	93	0	424	35	12	15	36	1.86
3679614--3679689	35	2.2	35	92	0	125	35	1	23	39	1.63
3681354--3681424	24	3.1	24	62	22	62	36	16	9	36	1.82
3683951--3683994	22	2.0	21	91	4	70	11	22	47	18	1.80
3683998--3684068	19	3.7	18	75	15	70	26	29	28	15	1.96
3684004--3684088	40	2.2	39	82	6	100	29	28	25	16	1.97
3691267--3691311	17	2.6	17	92	0	72	13	22	46	17	1.83
3691319--3691409	9	9.3	9	73	13	56	28	27	26	17	1.98
3700746--3700785	19	2.2	18	86	4	53	30	0	2	67	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3700729--3700784	21	2.8	21	82	12	64	32	1	3	62	1.23
3701902--3701970	24	2.6	27	76	17	72	44	1	1	52	1.19
3701927--3701982	30	1.9	29	82	7	69	46	1	1	50	1.22
3710799--3710935	68	2.0	68	100	0	274	24	18	18	37	1.94
3711375--3711454	41	2.0	40	85	2	106	33	22	20	23	1.97
3711399--3711454	20	2.8	19	83	5	67	32	23	19	25	1.98
3711630--3711695	22	3.0	22	86	0	96	24	39	16	19	1.92
3712046--3712083	20	1.9	20	100	0	76	21	21	26	31	1.98
3713810--3713903	33	2.8	34	81	3	118	46	22	18	12	1.82
3713810--3713912	34	3.1	34	79	8	97	47	21	17	13	1.82
3713877--3713926	20	2.5	20	90	0	73	42	22	18	18	1.90
3714443--3714525	42	2.0	42	83	4	105	22	38	18	20	1.93
3716057--3716120	33	1.9	33	87	0	92	45	18	20	15	1.86
3716131--3716199	20	3.5	20	80	4	86	18	20	24	36	1.95
3718632--3718699	24	2.8	24	86	0	91	38	19	17	25	1.93
3719487--3719533	20	2.3	20	92	0	76	21	19	27	31	1.97
3719520--3719653	20	6.7	20	85	5	180	21	19	20	38	1.93
3719520--3719653	61	2.2	60	86	4	180	21	19	20	38	1.93
3719520--3719674	40	3.8	41	83	4	172	24	18	20	36	1.95
3719649--3719695	21	2.2	21	92	0	76	36	14	27	21	1.93
3726707--3726731	2	12.5	2	100	0	50	52	0	0	48	1.00
3731656--3731702	23	2.1	23	80	4	60	34	29	23	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3731933--3732035	45	2.3	45	80	6	102	36	19	6	36	1.78
3732757--3732807	20	2.5	20	93	0	84	27	23	15	33	1.95
3737411--3737448	12	3.2	12	96	0	67	34	15	47	2	1.60
3737490--3737525	18	2.0	18	94	0	63	41	5	52	0	1.24
3742313--3742337	3	8.3	3	100	0	50	0	32	32	36	1.58
3745451--3745504	23	2.3	23	93	0	90	42	27	5	24	1.76
3746322--3746461	65	2.2	65	84	7	178	29	26	17	26	1.98
3746389--3746543	76	2.1	76	84	8	201	29	27	20	23	1.99
3750307--3750347	18	2.3	18	86	0	64	34	21	21	21	1.97
3752339--3752399	23	2.7	23	89	0	86	27	26	26	19	1.99
3754346--3754424	23	3.5	22	77	8	88	26	25	20	27	1.99
3766011--3766150	64	2.2	62	83	3	172	27	21	17	34	1.95
3766033--3766172	64	2.2	64	83	5	176	28	22	15	33	1.95
3771531--3771633	30	3.4	30	97	0	188	31	24	20	24	1.98
3771531--3771650	60	2.0	60	88	0	177	32	24	20	22	1.98
3771619--3771746	31	4.1	31	78	6	141	34	21	17	26	1.96
3773136--3773180	21	2.1	21	87	0	63	15	24	28	31	1.96
3775256--3775308	21	2.5	21	84	0	70	20	26	18	33	1.96
3775298--3775363	20	3.3	20	82	4	89	36	19	19	24	1.95
3775333--3775373	20	2.0	20	85	0	55	34	19	21	24	1.97
3776225--3776278	24	2.2	24	93	0	90	20	18	20	40	1.91
3778705--3778785	20	4.1	20	85	0	99	35	24	22	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3778701--3778783	40	2.1	40	88	4	123	37	24	20	18	1.94
3778790--3778915	19	6.8	19	86	10	190	46	17	21	15	1.84
3778926--3779019	33	2.8	33	85	3	116	13	21	20	44	1.86
3781100--3781191	20	4.6	20	93	0	148	38	21	19	20	1.94
3781157--3781212	20	2.8	20	86	2	69	25	21	17	35	1.95
3781198--3781319	34	3.4	34	78	12	145	18	20	19	40	1.91
3781219--3781322	20	5.5	20	78	13	121	21	19	20	39	1.93
3781181--3781322	74	1.9	73	88	1	212	19	20	19	40	1.92
3783208--3783261	20	2.7	20	88	0	81	38	25	18	16	1.92
3783285--3783333	20	2.5	20	83	6	64	20	18	24	36	1.94
3783665--3783726	18	3.0	22	69	26	62	17	16	38	27	1.91
3783920--3784027	20	5.7	20	71	16	104	20	21	19	38	1.93
3783955--3783982	13	2.2	13	100	0	56	21	21	14	42	1.88
3784024--3784064	21	2.0	21	90	0	64	39	17	26	17	1.91
3796892--3796958	31	2.2	31	83	5	82	41	17	7	32	1.78
3799818--3799880	31	2.0	31	90	0	99	22	28	15	33	1.95
3800102--3800146	22	2.0	24	82	8	58	53	13	6	26	1.64
3800502--3800562	31	2.0	31	93	0	104	32	14	18	34	1.91
3808453--3808497	3	15.0	3	90	0	72	62	2	0	35	1.08
3822709--3822771	31	2.0	31	84	6	83	39	23	17	19	1.92
3824596--3824650	21	2.6	22	80	5	69	23	25	18	32	1.97
3824638--3824751	21	5.5	21	76	7	83	38	18	21	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3824623--3824792	62	2.7	61	86	7	159	37	21	19	21	1.94
3824743--3824834	20	4.6	20	78	8	87	33	25	19	21	1.97
3824698--3824793	21	4.6	21	71	12	81	39	21	18	19	1.92
3824655--3824856	62	3.3	61	88	4	255	36	21	19	22	1.95
3825574--3825627	24	2.2	24	86	0	72	24	16	18	40	1.90
3825802--3825826	12	2.1	12	100	0	50	72	0	28	0	0.86
3828102--3828228	33	3.8	33	92	0	209	46	18	22	12	1.82
3828102--3828189	19	5.2	19	67	25	79	46	18	21	13	1.83
3828238--3828317	33	2.4	33	87	0	115	11	20	21	47	1.80
3828257--3828317	19	3.5	19	68	21	60	13	21	19	45	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21