genome.fa.s8480.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008480.1 Hibiscus syriacus cultivar Beakdansim tig00111311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2515485

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  10  of  13  ( 1492 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1873887--1873944	13	4.3	14	72	14	50	18	18	8	53	1.70
1873869--1873918	21	2.4	21	89	0	73	20	18	8	54	1.68
1874853--1875196	180	1.9	181	85	4	471	38	11	20	28	1.88
1876469--1876683	74	2.9	74	90	1	324	32	8	15	43	1.77
1876948--1876989	18	2.3	18	92	8	68	78	2	11	7	1.04
1877282--1877326	16	2.8	16	89	0	72	57	22	11	8	1.60
1878363--1878416	14	4.1	14	81	18	80	50	27	14	7	1.70
1878354--1878415	24	2.6	24	94	0	106	51	25	14	8	1.69
1886589--1886696	43	2.6	40	79	11	103	54	3	0	41	1.18
1886645--1886696	21	2.6	19	74	14	52	50	0	0	50	1.00
1889222--1889292	21	3.4	21	76	0	70	45	16	9	28	1.80
1890062--1890106	21	2.1	21	84	8	56	17	31	22	28	1.97
1890150--1890202	20	2.7	20	93	0	88	30	24	26	18	1.98
1890222--1890320	21	4.7	21	79	13	114	20	18	37	24	1.94
1890543--1890582	21	1.9	21	85	10	55	52	7	10	30	1.62
1891696--1891743	19	2.5	20	82	3	62	29	12	6	52	1.63
1892622--1892686	34	2.0	32	82	14	80	32	26	13	27	1.94
1893026--1893138	20	5.7	20	92	0	172	30	23	25	20	1.98
1893072--1893129	10	5.5	12	70	29	60	31	24	25	18	1.98
1893881--1893907	14	1.9	14	100	0	54	22	22	22	33	1.97
1904262--1904519	34	7.5	34	77	14	149	44	3	5	45	1.46
1904289--1904521	34	6.8	34	77	14	216	45	3	5	45	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1904262--1904521	71	3.8	67	74	16	223	44	3	5	45	1.45
1904412--1904476	29	2.2	29	88	0	94	47	4	4	43	1.44
1904384--1904507	63	2.0	61	84	10	162	48	4	3	44	1.37
1904543--1904592	22	2.3	22	85	0	64	22	0	4	74	0.99
1904560--1904603	16	2.7	15	83	13	52	15	4	0	79	0.89
1904563--1904587	6	4.2	6	100	0	50	16	0	0	84	0.63
1905277--1905321	23	1.9	23	82	13	56	42	15	17	24	1.88
1906325--1906362	20	1.9	20	89	10	60	13	31	34	21	1.91
1909824--1909892	35	2.0	36	88	5	106	21	13	7	57	1.59
1910390--1910439	6	7.3	7	89	10	61	48	0	0	52	1.00
1910398--1910440	2	22.0	2	95	4	79	48	0	0	51	1.00
1910433--1910689	95	2.7	95	84	4	293	34	18	16	30	1.93
1912031--1912728	372	1.9	373	91	1	1150	32	23	17	26	1.97
1912031--1912728	125	5.6	124	90	0	1047	32	23	17	26	1.97
1912776--1913216	84	5.2	84	84	0	533	33	23	18	24	1.97
1913816--1914050	36	6.8	34	77	13	225	45	3	5	45	1.43
1913792--1913974	71	2.5	70	83	10	185	43	4	6	44	1.51
1913938--1914005	29	2.3	29	82	5	84	50	5	4	39	1.47
1913957--1913989	17	1.9	17	88	11	50	45	9	6	39	1.61
1913913--1914036	63	2.0	60	84	7	158	48	4	4	43	1.40
1914061--1914095	2	17.5	2	93	0	61	48	2	0	48	1.16
1914837--1914881	23	1.9	23	82	13	56	42	13	20	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1925743--1925790	21	2.3	21	92	0	78	33	33	18	14	1.91
1925828--1925897	21	3.3	21	70	21	65	18	18	24	38	1.93
1925798--1925906	42	2.6	42	86	0	173	20	21	23	34	1.96
1925996--1926038	6	7.5	6	97	2	72	30	53	16	0	1.43
1926793--1927032	21	11.4	21	72	11	170	35	20	20	23	1.96
1926779--1927002	42	5.3	42	86	2	299	36	21	19	22	1.95
1929992--1930082	42	2.1	45	82	15	111	26	3	1	69	1.11
1932155--1932188	7	4.7	7	96	3	59	14	14	14	55	1.69
1933424--1933478	13	4.2	13	84	9	58	78	7	14	0	0.96
1933415--1933468	26	2.0	28	89	7	85	79	7	12	0	0.92
1933424--1933468	13	3.2	15	81	15	60	80	6	13	0	0.91
1933415--1933478	26	2.5	25	85	12	78	78	7	14	0	0.96
1935200--1935292	36	2.6	36	91	1	143	31	21	10	36	1.88
1935239--1935545	65	4.5	66	74	11	201	30	19	10	39	1.85
1935137--1935394	101	2.5	100	83	5	295	30	18	12	38	1.87
1935312--1935430	36	3.3	36	80	5	141	28	20	12	38	1.89
1935225--1935484	138	1.9	138	85	0	358	28	19	11	40	1.86
1936241--1936492	110	2.3	110	84	2	332	36	22	17	23	1.94
1937892--1937962	21	3.3	20	75	17	63	26	4	1	67	1.17
1937958--1938006	2	25.0	2	82	12	57	42	4	2	51	1.32
1938109--1938169	18	3.5	18	78	8	56	21	3	0	75	0.94
1938280--1938314	18	1.9	18	94	0	61	17	11	0	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1948114--1948201	45	2.0	45	93	0	149	19	6	13	60	1.55
1955448--1955492	16	2.8	16	89	0	63	24	24	13	37	1.91
1955660--1955686	13	2.1	13	100	0	54	55	0	0	44	0.99
1955726--1955772	14	3.7	14	71	26	50	44	0	4	51	1.21
1955725--1955774	23	2.1	24	96	3	93	48	0	4	48	1.20
1957499--1957586	32	2.7	34	86	10	114	35	14	17	32	1.90
1957531--1957651	31	3.8	31	80	2	107	34	14	17	33	1.91
1958397--1958448	21	2.6	20	88	8	79	21	15	13	50	1.78
1959595--1959654	21	2.8	20	75	9	57	23	0	26	50	1.50
1959706--1959859	2	79.0	2	69	19	94	44	6	0	48	1.33
1959824--1959870	15	3.1	15	93	0	85	42	6	4	46	1.48
1959864--1961309	4	368.8	4	91	5	2303	47	25	1	25	1.62
1961591--1961650	21	2.8	20	75	9	57	23	0	26	50	1.50
1961801--1961842	14	2.9	15	89	3	68	40	4	4	50	1.45
1961897--1961982	14	6.0	14	85	8	93	46	2	1	50	1.21
1961906--1961982	2	40.5	2	84	10	108	48	1	1	49	1.17
1962495--1962576	41	2.0	42	81	15	100	48	0	3	47	1.19
1963160--1963198	19	2.0	20	95	5	71	15	25	20	38	1.92
1964167--1964204	19	2.0	19	100	0	76	15	26	21	36	1.93
1965161--1965268	55	2.0	55	84	0	144	25	14	21	38	1.91
1975533--1975583	20	2.4	21	83	9	59	35	1	11	50	1.50
1977512--1977554	19	2.3	19	95	0	77	51	13	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1985606--1985684	32	2.5	31	82	11	90	31	36	13	17	1.89
1987001--1987031	15	2.1	15	100	0	62	45	0	0	54	0.99
1990335--1990395	30	2.0	30	93	0	104	31	22	16	29	1.96
1994935--1994965	15	2.1	15	93	0	53	64	0	32	3	1.09
1997541--1997605	24	2.7	24	81	11	78	27	18	38	15	1.91
2012481--2012571	21	4.4	21	78	13	116	16	19	27	36	1.93
2012522--2012591	20	3.5	20	70	18	72	12	22	24	40	1.89
2012501--2012751	41	5.9	41	85	9	322	17	20	25	36	1.94
2012636--2012704	21	3.3	21	67	18	63	18	18	26	36	1.94
2012501--2012745	133	1.8	133	92	0	418	17	20	25	36	1.94
2013393--2013424	6	5.3	6	100	0	64	0	15	50	34	1.45
2013476--2013687	41	5.2	41	91	2	320	40	24	19	15	1.90
2013494--2013716	41	5.4	42	89	5	207	39	23	18	17	1.92
2013640--2013710	21	3.4	21	68	3	72	35	26	15	22	1.94
2014860--2014887	14	2.0	14	100	0	56	42	21	21	14	1.88
2017341--2017532	93	2.1	93	96	0	357	28	22	16	32	1.96
2017533--2017586	24	2.2	24	83	0	63	44	14	16	24	1.85
2018478--2018587	20	5.4	20	68	13	64	35	13	21	29	1.92
2018542--2018631	20	4.4	21	77	10	71	31	12	25	31	1.92
2020370--2020411	21	2.0	21	85	0	57	45	19	2	33	1.63
2025044--2025099	29	1.9	29	85	7	78	44	7	14	33	1.72
2027477--2027536	18	3.3	18	85	0	84	30	10	13	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2032191--2032282	44	2.1	45	87	6	134	32	15	15	36	1.88
2032921--2032964	19	2.2	20	84	12	54	63	4	6	25	1.38
2041575--2042029	226	2.0	228	98	0	887	34	22	18	24	1.96
2042384--2042414	6	5.2	6	100	0	62	16	67	16	0	1.23
2043039--2043092	3	18.0	3	81	7	65	61	0	35	3	1.14
2043036--2043092	21	2.7	21	86	10	89	59	0	36	3	1.14
2043039--2043092	15	3.6	15	84	0	72	61	0	35	3	1.14
2049212--2049263	2	26.0	2	100	0	104	50	0	0	50	1.00
2056914--2056984	3	23.7	3	91	5	117	64	0	0	35	0.94
2056905--2056985	15	5.4	16	88	8	109	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13