genome.fa.s8480.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008480.1 Hibiscus syriacus cultivar Beakdansim tig00111311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2515485

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  9  of  13  ( 1492 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1667556--1667616	14	4.7	14	75	17	51	40	3	4	50	1.40
1667570--1667614	24	1.9	24	86	4	65	40	2	4	53	1.33
1667581--1667622	17	2.5	17	80	0	57	40	0	2	57	1.12
1668616--1668660	23	2.0	23	86	0	63	55	2	2	40	1.24
1669874--1669907	15	2.2	16	94	5	61	55	5	0	38	1.24
1669965--1670020	15	3.7	16	71	20	57	42	14	0	42	1.45
1669966--1670067	30	3.3	30	86	5	134	46	13	0	39	1.50
1670203--1670238	17	2.1	17	100	0	72	41	41	0	16	1.48
1670599--1670685	29	3.0	29	77	3	86	19	28	35	16	1.93
1673679--1673723	23	2.0	23	90	0	72	24	26	26	22	2.00
1673691--1674008	152	2.1	149	93	4	541	34	21	16	26	1.95
1674481--1674518	20	1.9	20	88	0	58	10	31	34	23	1.89
1675046--1675082	19	1.9	20	88	5	58	62	0	35	2	1.10
1680621--1680665	23	2.0	23	90	0	72	24	26	26	22	2.00
1680633--1680948	150	2.1	149	94	1	553	35	21	16	26	1.95
1681421--1681458	20	1.9	20	88	0	58	10	31	34	23	1.89
1681986--1682022	19	1.9	20	88	5	58	62	0	35	2	1.10
1690473--1690544	22	3.3	21	72	14	56	43	11	20	25	1.85
1690470--1690553	44	1.9	44	85	0	114	40	15	19	25	1.90
1690567--1690721	59	2.6	60	82	10	185	41	20	16	21	1.90
1691710--1691757	17	2.8	17	78	9	53	64	0	0	35	0.94
1692946--1693019	18	3.9	18	75	13	67	29	32	21	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1692947--1693042	40	2.4	40	85	0	129	32	31	19	16	1.94
1693591--1693751	64	2.5	64	82	0	187	27	19	19	33	1.96
1694920--1694962	21	2.0	21	100	0	86	18	27	9	44	1.80
1696003--1696033	16	1.9	16	100	0	62	32	25	6	35	1.82
1700399--1700559	64	2.5	64	80	4	171	27	19	18	34	1.95
1714947--1714989	20	2.2	20	100	0	86	20	0	23	55	1.43
1716181--1716255	35	2.1	35	90	0	114	44	21	0	34	1.53
1716251--1716327	35	2.2	35	79	4	84	40	0	16	42	1.49
1720975--1721067	21	4.5	21	78	4	100	39	18	24	17	1.91
1720975--1721067	41	2.3	41	100	0	186	39	18	24	17	1.91
1720994--1721128	41	3.3	41	84	4	148	38	20	20	20	1.94
1721056--1721149	20	4.7	20	78	2	80	35	24	15	24	1.95
1721667--1721747	19	4.5	19	73	16	73	46	24	17	11	1.80
1721743--1721894	19	8.1	19	79	11	143	12	21	21	44	1.85
1721748--1721824	39	2.0	39	87	5	111	9	19	25	45	1.80
1723896--1723988	42	2.2	42	82	0	114	21	38	16	23	1.92
1725376--1725411	14	2.6	14	95	0	63	30	0	25	44	1.54
1725590--1725740	19	8.7	19	65	21	89	15	21	20	42	1.89
1725594--1725720	33	3.9	32	87	8	184	14	22	19	43	1.88
1725587--1725719	66	2.0	66	95	0	239	16	21	19	42	1.89
1728012--1728036	12	2.1	12	100	0	50	0	28	0	72	0.86
1728211--1728264	24	2.2	24	90	0	81	38	20	16	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1729324--1729380	20	2.8	20	94	0	96	38	22	22	15	1.92
1729400--1729453	19	3.1	19	82	17	73	12	22	16	48	1.80
1731321--1731406	19	4.5	19	82	4	102	41	23	20	13	1.88
1731322--1731395	39	1.9	38	86	2	103	40	22	21	14	1.90
1731320--1731425	19	5.9	18	75	14	94	44	23	19	12	1.85
1731435--1731527	32	2.8	33	91	3	152	15	19	19	46	1.84
1731512--1731565	19	2.8	20	80	8	58	16	24	24	35	1.95
1732038--1732082	18	2.5	18	88	0	72	13	15	44	26	1.83
1733401--1733438	20	1.9	20	88	0	58	50	21	15	13	1.78
1733700--1733743	22	2.0	22	95	0	79	18	15	45	20	1.85
1733931--1734024	20	4.7	20	80	2	89	23	18	24	34	1.96
1733951--1734028	41	1.9	41	86	0	111	21	16	21	39	1.92
1733911--1734025	20	5.7	20	78	5	88	23	17	23	35	1.95
1733951--1734046	41	2.3	41	80	3	104	20	19	21	37	1.94
1736040--1736103	31	2.0	32	93	3	112	62	4	15	17	1.49
1737183--1737273	47	1.9	47	82	4	112	48	5	1	45	1.33
1737245--1737299	27	2.0	27	89	0	83	52	0	0	47	1.00
1737355--1737406	20	2.6	19	82	8	68	67	1	0	30	1.02
1737263--1737500	120	2.0	120	83	4	304	46	8	7	36	1.63
1738886--1738948	3	21.7	3	81	12	60	60	0	0	39	0.97
1738880--1738939	32	1.9	31	89	3	93	56	0	0	43	0.99
1739207--1739996	113	7.0	113	90	1	1172	28	18	15	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1741130--1741178	16	2.8	17	78	12	55	48	6	8	36	1.58
1741530--1741645	9	12.2	9	75	13	99	2	16	0	81	0.81
1741528--1741642	11	10.8	10	75	19	92	2	16	0	80	0.81
1741528--1741645	39	3.1	38	80	11	143	2	16	0	80	0.82
1741529--1741640	6	18.7	6	77	14	90	2	16	0	81	0.81
1748956--1749004	15	3.3	15	83	13	57	51	6	16	26	1.68
1752257--1752312	23	2.4	23	79	8	60	58	5	7	28	1.46
1752280--1752329	24	2.2	22	82	13	57	60	2	4	34	1.27
1752761--1752850	47	1.9	46	82	6	110	47	5	1	45	1.33
1752823--1752876	27	2.0	27	89	3	83	51	0	0	48	1.00
1754491--1754556	3	22.7	3	76	11	66	60	0	0	39	0.97
1760014--1760062	3	16.0	3	95	4	89	65	0	0	34	0.93
1760319--1760377	17	3.4	17	70	25	59	15	23	11	49	1.77
1760421--1760975	113	5.0	112	86	4	689	29	18	15	36	1.91
1761662--1761998	114	3.0	114	95	0	611	29	22	14	32	1.94
1762692--1762735	16	2.5	18	85	10	56	6	20	0	72	1.07
1762692--1762730	17	2.4	16	86	4	51	5	17	0	76	0.96
1775107--1775157	25	2.1	24	82	10	59	0	13	9	76	1.02
1789294--1789367	30	2.4	30	81	2	85	29	17	21	31	1.96
1791254--1791284	15	2.1	15	100	0	62	19	41	6	32	1.77
1793168--1793223	21	2.7	21	100	0	112	23	23	21	32	1.98
1794088--1794147	30	2.0	30	100	0	120	23	20	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1796884--1796928	20	2.5	18	80	19	58	46	11	20	22	1.81
1797070--1797144	38	2.0	37	84	5	98	49	4	0	46	1.20
1799650--1799733	27	2.9	27	82	8	87	28	11	13	46	1.78
1799685--1799906	113	2.0	111	84	6	277	27	9	5	56	1.55
1800610--1800643	16	2.2	16	89	5	52	55	5	2	35	1.39
1800775--1800899	38	3.3	38	97	2	241	12	12	24	50	1.74
1813230--1813313	44	1.9	44	95	0	150	23	13	20	42	1.87
1817293--1817804	204	2.5	202	82	4	602	33	11	20	35	1.88
1821317--1821367	19	2.7	19	90	0	75	29	13	13	43	1.83
1822301--1822338	17	2.2	18	90	9	62	52	15	21	10	1.72
1824533--1824620	32	2.8	30	74	14	88	35	18	13	32	1.90
1824535--1824659	31	4.0	31	74	11	112	31	18	17	32	1.94
1824646--1824717	30	2.4	30	92	0	117	26	20	22	30	1.98
1827762--1827919	81	2.0	81	81	5	185	32	12	23	31	1.92
1836397--1836452	2	28.0	2	96	0	103	51	0	0	48	1.00
1849687--1849743	23	2.4	24	88	2	80	49	17	5	28	1.68
1855799--1855849	3	16.7	3	95	4	93	35	0	0	64	0.94
1855836--1855880	23	2.0	23	82	8	56	33	4	2	60	1.29
1858901--1858931	10	3.0	10	90	9	53	9	0	0	90	0.46
1858902--1858932	11	2.8	11	100	0	62	6	0	0	93	0.35
1863514--1863629	4	30.2	4	89	8	188	50	23	0	25	1.49
1864024--1864105	36	2.3	36	78	4	94	36	19	12	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1864332--1864422	28	3.2	27	82	14	112	28	8	14	48	1.73
1864303--1864578	120	2.3	121	85	5	346	28	13	12	45	1.80
1864821--1864881	31	1.9	31	84	15	81	32	14	11	40	1.82
1865419--1865515	28	3.4	28	82	15	101	26	16	12	44	1.83
1865694--1865826	40	3.2	40	77	10	135	24	33	17	24	1.96
1865987--1866036	3	16.7	3	100	0	100	34	0	0	66	0.92
1871122--1871224	19	5.4	19	75	8	93	45	5	16	32	1.71
1871133--1871224	38	2.4	38	85	3	114	47	6	16	29	1.71
1871241--1871284	12	3.6	12	81	3	52	50	2	20	27	1.60
1871429--1871466	19	2.0	20	94	5	69	31	0	10	57	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13