genome.fa.s8480.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008480.1 Hibiscus syriacus cultivar Beakdansim tig00111311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2515485

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1492 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384275--384313	10	3.9	10	89	0	60	30	30	0	38	1.58
391259--391362	31	3.3	32	76	10	106	55	1	4	37	1.32
391336--391393	25	2.2	26	78	9	64	56	1	1	39	1.19
391349--391402	25	2.2	25	83	9	76	57	1	3	37	1.27
399974--400398	216	2.0	216	95	0	769	28	23	16	32	1.96
402317--402382	2	32.5	2	96	3	123	48	1	0	50	1.10
402763--402894	40	3.3	40	84	1	165	34	25	18	21	1.96
402775--402876	20	5.1	20	83	7	125	30	27	19	22	1.98
403108--403183	20	3.8	20	89	0	116	39	21	22	17	1.92
403183--403247	19	3.7	19	80	13	77	13	16	18	50	1.78
404831--404922	42	2.2	42	86	1	132	21	15	41	21	1.90
405260--405298	20	2.0	20	89	0	60	35	28	10	25	1.89
405286--405372	20	4.4	20	85	1	104	35	22	25	16	1.94
405397--405498	19	5.6	19	78	12	106	12	19	22	45	1.84
406039--406086	18	2.7	18	93	0	87	14	12	45	27	1.81
407403--407476	20	3.8	20	76	1	69	47	20	17	14	1.83
407724--407767	22	2.0	22	95	0	79	18	15	45	20	1.85
407954--408067	20	5.7	20	82	6	131	23	18	26	31	1.97
407934--408069	41	3.3	41	81	6	177	23	17	25	33	1.96
407954--408089	41	3.3	41	81	3	132	24	19	24	32	1.97
408078--408130	21	2.5	20	76	8	61	33	18	24	22	1.97
407961--408151	41	4.7	41	74	4	118	27	18	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413632--413702	32	2.3	31	80	9	90	45	7	4	43	1.50
425896--425935	21	1.9	21	94	0	71	22	22	27	27	1.99
428821--428858	19	2.1	19	90	5	60	44	5	7	42	1.56
429147--429220	30	2.4	31	84	4	96	37	12	21	28	1.89
432726--432805	30	2.7	30	81	11	83	32	23	7	36	1.83
450834--450870	20	1.9	20	94	5	67	29	10	2	56	1.47
455292--455344	26	2.0	26	96	0	97	16	20	37	24	1.93
455362--455413	16	3.2	16	68	10	52	34	17	26	21	1.95
455920--455963	21	2.1	21	91	0	70	29	0	15	54	1.42
455940--455999	28	2.2	28	96	3	113	30	0	13	56	1.37
456438--456511	36	2.0	37	82	10	89	36	0	9	54	1.33
456722--456785	26	2.5	24	78	11	65	51	4	1	42	1.32
459779--459835	21	2.7	22	74	17	57	38	0	3	57	1.16
459786--459838	21	2.5	20	82	14	63	39	0	1	58	1.09
460108--460216	52	2.0	54	89	5	168	40	0	12	45	1.49
460117--460280	14	12.8	13	73	16	105	44	1	10	43	1.46
460108--460342	88	2.7	89	80	9	277	42	1	10	45	1.48
460108--460202	25	3.7	25	75	5	82	41	1	11	46	1.47
460215--460260	12	3.7	12	80	11	56	52	2	4	41	1.33
460205--460270	26	2.5	26	88	9	107	46	1	9	42	1.44
460108--460390	11	22.9	11	69	19	84	43	1	10	44	1.47
460599--460635	19	1.9	19	88	0	56	40	0	8	51	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460608--460647	14	2.7	14	84	7	53	45	0	7	47	1.31
460629--460792	11	14.6	11	69	15	88	43	1	10	44	1.46
460629--460683	21	2.7	21	88	5	78	45	0	5	49	1.25
460653--460729	27	2.8	27	82	5	75	42	0	11	45	1.40
459800--460845	499	2.1	480	82	11	1235	42	4	9	43	1.58
460712--460802	14	7.2	13	77	14	84	45	2	9	42	1.49
463236--463340	30	3.5	30	84	3	131	45	15	0	38	1.52
463397--463510	41	2.9	37	75	18	106	45	13	0	40	1.49
463654--463723	35	2.0	35	88	8	106	48	8	0	42	1.33
463765--463871	44	2.6	43	84	11	134	47	11	0	40	1.46
464212--464264	22	2.3	23	83	6	72	35	16	26	20	1.94
464353--464415	32	2.0	32	96	0	117	19	28	19	33	1.96
467255--467358	54	1.9	54	96	0	190	29	33	14	22	1.93
476096--476138	21	2.0	21	81	0	50	30	30	25	13	1.94
476680--476974	144	2.0	144	89	7	456	26	17	21	34	1.95
476953--476995	21	2.0	21	86	0	59	20	25	25	27	1.99
478978--479342	182	2.0	182	98	1	714	31	14	23	30	1.95
483710--484025	150	2.1	149	94	1	553	26	17	21	34	1.95
483993--484037	23	2.0	23	86	0	63	20	26	26	26	1.99
484920--484964	21	2.1	21	87	0	63	20	42	22	15	1.89
485819--486206	54	7.4	54	83	5	481	31	21	18	28	1.96
492684--493059	54	7.0	54	90	1	567	33	20	17	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503439--503540	34	2.9	36	89	5	163	44	12	15	27	1.83
503986--504048	2	31.5	2	96	0	117	47	0	0	52	1.00
504128--504195	26	2.6	27	81	9	86	26	7	1	64	1.28
504153--504185	15	2.1	17	88	11	52	30	6	0	63	1.18
507373--507406	16	2.1	16	89	10	52	76	8	14	0	1.01
508104--508152	22	2.2	22	92	0	80	32	24	14	28	1.94
508567--508602	18	2.0	18	88	0	54	19	8	30	41	1.81
509131--509253	36	3.4	36	83	7	151	24	21	14	39	1.91
509212--509369	67	2.4	67	82	5	187	32	21	8	37	1.84
510028--510964	105	9.0	105	92	1	1452	33	26	17	22	1.96
511512--511613	34	2.9	36	89	5	163	44	12	15	27	1.83
512060--512092	2	16.5	2	100	0	66	48	0	0	51	1.00
512150--512187	20	1.9	20	88	0	58	26	7	2	63	1.35
512197--512231	16	2.1	18	89	10	56	25	8	0	65	1.21
513015--513046	2	16.0	2	100	0	64	50	0	0	50	1.00
522672--522721	24	2.0	24	84	3	64	32	14	0	54	1.40
522789--522928	60	2.3	61	87	3	203	32	23	5	38	1.77
523473--523531	29	2.0	29	96	0	109	38	11	20	28	1.88
523709--523768	21	2.8	20	78	9	66	46	1	1	50	1.21
523709--523767	20	2.8	20	82	7	73	47	1	1	49	1.21
526436--526578	51	2.8	51	81	4	137	21	34	24	19	1.97
526731--526761	10	3.1	10	95	0	53	32	32	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526794--526834	18	2.3	18	91	4	66	29	4	2	63	1.28
528516--528565	18	2.8	18	81	0	55	32	24	14	30	1.94
529150--529234	35	2.5	33	78	14	91	27	8	9	55	1.60
532357--532404	16	3.1	15	83	13	62	64	2	2	31	1.16
533634--533665	14	2.2	15	94	5	57	34	6	15	43	1.72
542212--542260	20	2.5	20	83	6	55	48	14	12	24	1.77
542326--542644	170	1.9	171	84	6	432	42	12	15	30	1.84
546978--547023	23	2.0	23	100	0	92	47	4	26	21	1.69
554744--554781	12	3.2	12	88	3	51	63	0	36	0	0.95
557714--557786	38	1.9	38	94	0	128	23	20	8	47	1.76
559752--559790	21	1.9	21	94	5	71	35	10	10	43	1.73
559551--559989	201	2.2	201	83	4	537	38	15	11	34	1.84
559955--560032	21	3.7	21	98	0	147	25	11	14	48	1.77
559773--560220	233	1.9	238	84	5	548	39	13	12	35	1.82
560386--560423	21	1.9	20	89	10	60	31	10	13	44	1.77
559997--560670	201	3.4	199	82	6	838	40	13	12	33	1.82
560586--560624	21	1.9	20	84	5	51	33	7	12	46	1.71
565110--565149	19	2.1	19	100	0	80	15	15	15	55	1.71
565498--566771	200	6.5	201	74	10	907	41	13	12	33	1.81
565827--566189	179	2.0	180	79	4	394	41	15	11	31	1.83
565999--566810	398	2.0	400	80	4	926	39	14	12	33	1.83
566904--566996	20	4.7	20	94	0	150	34	18	16	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566927--567007	20	4.0	20	91	1	81	37	17	12	33	1.87
568019--568508	200	2.5	202	87	3	704	42	11	12	33	1.78
568347--568709	179	2.0	180	82	2	435	41	15	11	31	1.83
568533--568908	200	1.9	200	86	3	533	41	13	11	33	1.81
568918--568951	16	2.1	16	100	0	68	26	17	17	38	1.92
570025--570067	16	2.8	15	86	10	52	60	0	0	39	0.97
572037--572157	58	2.1	59	95	1	217	52	14	9	23	1.71
572387--572434	23	2.1	23	84	7	62	47	10	0	41	1.37
573127--573170	2	22.0	2	100	0	88	50	0	0	50	1.00
577500--577581	35	2.2	37	78	18	91	28	24	18	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13