Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008480.1 Hibiscus syriacus cultivar Beakdansim tig00111311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2515485

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1492 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2447153--2447179
2
13.5
2
100
0
54
51
0
0
48
1.00
2448094--2448123
6
5.0
6
91
0
51
50
36
0
13
1.42
2448377--2448450
30
2.5
30
88
4
114
55
13
9
21
1.66
2451407--2451449
4
10.8
4
89
0
68
48
20
0
30
1.50
2451405--2451456
12
4.3
12
90
0
68
48
17
0
34
1.48
2452959--2453034
24
3.0
24
72
11
71
38
2
1
57
1.21
2453065--2453091
2
13.5
2
100
0
54
48
0
0
51
1.00
2453166--2453298
50
2.6
50
84
2
167
24
6
16
51
1.68
2453832--2453864
11
2.8
12
81
9
50
75
12
6
6
1.16
2453830--2453884
23
2.5
22
82
11
67
74
10
9
5
1.21
2454168--2454220
18
2.9
18
83
8
72
67
0
0
32
0.91
2455111--2455150
3
13.0
3
85
15
55
32
0
0
67
0.91
2455111--2455150
18
2.2
19
95
4
73
32
0
0
67
0.91
2455093--2455152
28
2.2
26
88
5
84
31
0
0
68
0.90
2462674--2462732
22
2.7
22
91
0
100
22
8
22
47
1.77
2466345--2466386
21
2.0
22
90
4
68
35
21
26
16
1.94
2466635--2466705
33
2.2
33
87
7
101
45
14
8
32
1.74
2466700--2466741
21
2.0
21
95
0
75
50
9
11
28
1.70
2471184--2471288
14
7.6
14
69
16
67
12
12
16
59
1.62
2471192--2471277
44
2.0
44
88
0
127
12
12
16
58
1.64
2471218--2471255
20
1.9
20
94
0
67
13
13
15
57
1.65
2471226--2471277
10
4.8
10
73
17
50
11
13
17
57
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2471190--2471294
24
4.5
24
76
11
94
13
12
15
59
1.62
2479241--2479305
27
2.4
27
100
0
130
36
21
20
21
1.95
2487955--2488017
21
2.9
21
80
4
72
20
34
25
19
1.96
2492577--2492624
19
2.5
19
90
6
71
29
22
25
22
1.99
2496845--2497003
64
2.5
65
80
4
171
33
20
23
23
1.97
2497396--2497433
20
2.0
20
89
5
60
50
2
10
36
1.51
2498121--2498171
2
25.5
2
100
0
102
50
0
0
49
1.00
2499616--2499640
2
12.5
2
100
0
50
48
0
0
52
1.00
2500408--2500511
37
2.8
37
86
0
136
42
13
14
29
1.84
2500868--2500910
18
2.5
17
85
7
61
25
4
2
67
1.22
2501362--2501433
36
2.1
36
82
15
89
27
5
11
55
1.57
2506924--2507460
183
2.9
183
95
0
975
27
20
21
30
1.98
2508617--2508730
36
3.2
34
74
9
95
25
16
13
44
1.84
2508601--2508762
72
2.2
76
85
8
219
27
18
12
41
1.86
2508601--2508796
72
2.7
71
82
8
166
27
16
13
42
1.86
2508866--2509046
39
4.9
39
64
17
109
28
19
12
39
1.88
2508843--2509163
106
3.1
104
90
3
504
30
19
12
37
1.89
2509062--2509130
36
1.9
36
90
0
111
23
20
15
40
1.91
2509338--2509584
105
2.3
106
92
0
415
35
25
17
21
1.95
2509523--2509627
43
2.4
43
91
0
174
36
22
19
21
1.95
2509418--2509733
148
2.1
148
94
0
560
35
26
17
21
1.95
2509566--2510010
104
4.3
104
88
3
630
33
26
17
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2509566--2510010
209
2.1
206
88
3
662
33
26
17
22
1.96
2510995--2511089
3
32.3
3
72
17
51
31
3
2
63
1.22
2510983--2511025
18
2.5
17
85
7
61
25
4
2
67
1.22
2510983--2511089
12
8.7
11
70
21
63
30
3
1
63
1.22
2511013--2511093
21
3.8
21
73
19
69
34
2
1
61
1.17
2511269--2511319
25
2.2
25
89
10
81
23
0
0
76
0.79
2512412--2512444
15
2.2
15
94
0
57
30
33
21
15
1.94
2512529--2512667
29
4.8
29
92
1
226
18
20
15
46
1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!