genome.fa.s8480.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008480.1 Hibiscus syriacus cultivar Beakdansim tig00111311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2515485

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1492 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1303574--1303620	20	2.3	20	92	0	76	12	2	46	38	1.54
1305477--1305541	24	2.7	24	90	2	94	26	0	4	69	1.08
1305477--1305542	3	21.7	3	90	3	78	27	0	4	68	1.09
1308730--1308770	22	2.0	22	85	9	59	9	9	14	65	1.46
1309782--1309819	14	2.7	14	95	0	67	21	34	34	10	1.87
1311032--1311070	19	2.1	19	85	9	53	48	23	5	23	1.70
1312105--1312176	20	3.6	21	85	5	87	37	22	13	26	1.92
1312333--1312371	16	2.5	15	84	8	51	28	5	0	66	1.12
1312924--1312957	12	2.8	12	90	0	50	55	29	0	14	1.40
1313084--1313137	24	2.2	24	83	0	63	22	16	22	38	1.93
1315414--1315572	20	8.0	19	74	12	124	20	14	23	42	1.88
1315414--1315597	40	4.7	39	77	12	180	20	14	22	42	1.88
1315590--1315697	21	5.1	21	97	0	198	37	18	27	15	1.91
1315872--1315912	19	2.3	18	84	16	50	51	4	7	36	1.51
1316234--1316287	3	18.0	3	100	0	108	33	0	0	66	0.92
1316646--1316699	25	2.2	25	83	12	67	53	1	0	44	1.11
1317696--1317736	21	2.0	21	95	0	73	43	9	4	41	1.59
1319746--1319813	24	2.8	24	86	2	73	48	11	5	33	1.64
1322237--1322304	21	3.2	20	69	22	59	42	25	1	30	1.64
1322223--1322322	42	2.4	42	88	3	157	43	25	1	31	1.61
1323164--1323234	30	2.4	30	76	4	72	39	18	4	38	1.70
1325504--1325543	17	2.4	17	86	0	53	57	5	12	25	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1327315--1327734	55	7.6	55	83	2	461	30	23	17	28	1.97
1329064--1329104	19	2.2	19	86	8	57	9	12	0	78	0.98
1329081--1329214	15	8.5	15	73	15	85	9	11	0	78	0.97
1329070--1329166	31	3.2	30	79	8	81	8	15	0	76	1.01
1329080--1329189	31	3.5	31	77	10	98	9	12	0	78	0.97
1329153--1329214	8	7.8	8	76	18	58	11	6	0	82	0.84
1338836--1338946	45	2.4	47	80	10	129	43	19	9	27	1.81
1344684--1344747	3	20.7	3	84	6	74	32	1	3	62	1.20
1344739--1344780	22	1.9	22	85	9	59	52	2	2	42	1.27
1348103--1348193	25	3.7	24	91	4	146	41	10	4	42	1.60
1350123--1350152	2	15.0	2	100	0	60	50	0	0	50	1.00
1350344--1350378	18	1.9	18	94	0	61	28	34	20	17	1.95
1350364--1350444	22	3.7	22	85	6	110	33	33	18	14	1.92
1350346--1350450	44	2.5	40	76	18	115	32	34	17	16	1.92
1350994--1351137	63	2.3	64	80	6	150	22	20	22	34	1.96
1351185--1351241	21	2.7	21	91	0	96	24	21	24	29	1.99
1357326--1357361	18	2.0	18	94	0	63	30	33	19	16	1.94
1357346--1357405	22	2.7	22	77	10	68	38	33	15	13	1.86
1358082--1358133	19	2.7	19	100	0	104	26	26	17	28	1.97
1361586--1361648	16	4.0	17	76	15	73	31	1	1	65	1.12
1361586--1361649	3	20.7	3	82	6	74	32	1	1	64	1.13
1362218--1362301	40	2.1	40	95	0	150	44	10	5	39	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1368591--1368683	24	3.9	24	76	5	98	21	13	17	47	1.82
1368584--1368690	24	4.5	24	73	0	97	20	12	16	50	1.77
1370756--1370809	10	6.5	8	85	12	58	14	33	27	24	1.94
1370759--1370790	7	4.4	7	96	4	55	12	34	28	25	1.92
1375484--1375571	24	3.7	24	86	7	126	44	10	4	40	1.59
1377728--1377809	22	3.7	22	96	0	146	30	32	23	13	1.93
1378354--1378521	63	2.7	62	80	7	153	24	19	20	35	1.96
1381962--1382020	3	19.7	3	79	6	57	32	1	3	62	1.21
1382599--1382682	40	2.1	40	95	0	150	41	10	8	39	1.70
1387672--1388227	159	3.6	157	78	11	582	22	29	12	36	1.90
1387711--1388180	144	3.2	144	81	13	526	22	30	10	36	1.88
1388214--1388243	3	10.0	3	92	0	51	0	30	0	70	0.88
1391061--1391142	18	4.6	18	98	1	157	50	6	18	25	1.70
1391357--1391397	18	2.2	18	91	4	64	63	0	14	21	1.30
1391356--1391390	18	1.9	18	100	0	70	60	0	17	22	1.37
1393480--1393533	28	1.9	28	85	7	74	37	11	24	27	1.89
1400562--1400645	44	1.9	44	82	4	107	53	4	1	40	1.30
1400856--1400909	28	1.9	28	88	0	81	44	24	22	9	1.81
1400911--1401107	67	2.9	67	80	5	189	39	17	19	23	1.92
1402399--1402462	22	2.9	23	77	13	80	65	0	23	10	1.24
1411828--1411875	20	2.4	20	96	0	87	20	14	20	43	1.87
1426875--1426964	40	2.2	40	92	0	153	23	26	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1431571--1431605	17	2.1	17	100	0	70	20	0	28	51	1.47
1432191--1432217	12	2.2	12	100	0	54	25	7	29	37	1.83
1433255--1433350	30	3.3	29	78	4	104	40	6	11	41	1.66
1437717--1437753	19	1.9	19	89	10	58	5	24	10	59	1.52
1438843--1439027	31	6.0	31	96	1	327	37	22	19	20	1.94
1443047--1443231	31	6.0	31	94	1	309	37	21	19	21	1.94
1444832--1444911	3	26.7	3	82	5	90	60	0	0	40	0.97
1444832--1444910	21	3.8	21	86	0	104	59	0	0	40	0.97
1445230--1445791	113	5.0	113	92	0	849	29	19	13	37	1.90
1446513--1446905	83	4.7	83	96	1	693	36	22	13	27	1.92
1448051--1448083	14	2.4	14	95	5	59	0	9	0	90	0.44
1448044--1448086	11	3.8	11	96	3	77	0	11	0	88	0.52
1458723--1458787	24	2.8	23	79	4	69	61	1	1	35	1.15
1460357--1460393	19	1.9	19	89	10	58	5	24	10	59	1.52
1460819--1460910	3	30.7	3	84	4	123	61	0	0	38	0.96
1465387--1465486	31	3.2	31	73	10	96	34	18	18	30	1.94
1465387--1465487	32	3.2	32	75	9	109	34	17	17	29	1.94
1466910--1467002	16	5.9	15	72	7	69	7	17	29	46	1.75
1466921--1467002	31	2.6	31	92	1	137	8	18	28	45	1.78
1466920--1466993	15	4.8	15	75	5	67	6	18	29	44	1.76
1469208--1469257	20	2.5	20	90	0	82	36	12	10	42	1.76
1469230--1469791	182	3.1	181	86	2	747	43	12	14	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1474521--1474941	201	2.1	200	89	0	626	36	14	16	32	1.89
1475591--1475635	21	2.1	21	91	0	72	33	28	22	15	1.95
1476313--1476435	31	4.0	31	94	2	203	20	19	22	37	1.94
1477209--1477616	202	2.0	201	88	1	602	38	15	14	31	1.88
1477905--1477954	15	3.1	15	83	13	64	30	40	6	24	1.79
1479060--1479095	12	3.0	12	87	0	54	41	0	33	25	1.55
1480997--1481044	19	2.5	19	93	0	78	35	4	6	54	1.45
1483755--1484467	199	3.6	198	85	3	934	39	14	15	30	1.86
1484475--1484637	87	1.9	87	94	0	290	31	14	12	41	1.83
1484559--1484603	23	2.0	23	95	0	81	37	20	8	33	1.83
1485943--1485987	23	2.0	23	86	0	63	33	4	0	62	1.15
1485948--1485992	23	2.0	23	82	4	56	33	4	0	62	1.15
1492846--1492884	15	2.5	15	83	8	51	71	17	2	7	1.21
1494196--1494272	2	38.5	2	100	0	154	50	0	49	0	1.00
1510714--1510752	19	2.0	20	95	5	71	10	25	0	64	1.25
1512786--1512835	2	25.5	2	95	4	93	50	0	0	50	1.00
1521352--1521393	21	2.0	21	100	0	84	38	28	14	19	1.90
1524013--1524060	18	2.6	18	87	9	62	70	2	2	25	1.09
1525394--1525455	2	31.0	2	96	0	115	50	1	0	48	1.10
1525617--1525673	29	2.0	29	89	0	87	12	29	29	28	1.93
1525865--1525902	19	2.0	19	94	0	67	10	39	15	34	1.82
1526817--1526860	23	2.0	23	81	4	54	40	0	9	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1530115--1530199	21	4.2	21	64	17	54	41	0	12	45	1.42
1530064--1530298	49	4.6	49	79	14	235	42	0	11	45	1.42
1530115--1530248	60	2.2	60	96	1	243	42	0	11	45	1.41
1530129--1530238	21	5.5	21	67	20	58	42	0	11	45	1.41
1530123--1530319	109	1.8	109	97	0	376	43	0	12	44	1.41
1530240--1530319	21	4.0	21	60	15	51	43	0	11	45	1.39
1530126--1530228	35	3.2	35	62	25	91	43	0	10	45	1.38
1530655--1530905	11	20.6	11	67	22	62	42	1	10	45	1.50
1530643--1530877	60	3.9	59	72	15	185	41	1	10	46	1.48
1530724--1530925	26	8.1	25	72	17	102	45	3	8	42	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13