genome.fa.s8480.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008480.1 Hibiscus syriacus cultivar Beakdansim tig00111311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2515485

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  4  of  13  ( 1492 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577536--577691	65	2.4	65	84	3	217	28	22	18	30	1.97
580265--580315	24	2.1	24	96	0	93	33	15	15	35	1.90
580524--580608	30	2.8	30	98	0	161	5	31	27	35	1.81
589559--589723	42	4.0	42	88	2	217	26	18	22	32	1.97
590071--590323	53	4.8	53	86	3	321	29	19	27	23	1.98
594374--594494	58	2.1	59	93	4	210	52	15	8	23	1.70
601311--601366	3	18.3	3	92	3	94	67	0	1	30	1.01
601578--602414	90	9.3	90	89	2	1057	28	20	21	28	1.98
601578--602337	181	4.2	180	88	3	1045	29	20	21	28	1.98
603530--603739	54	3.9	54	90	0	294	26	22	14	37	1.92
606261--606396	72	1.9	71	84	1	182	35	18	19	26	1.95
608462--608495	12	2.8	12	86	4	50	67	0	8	23	1.18
608481--608550	20	3.4	21	76	7	65	64	8	10	17	1.48
617128--617196	29	2.3	29	87	7	95	34	17	11	36	1.86
617684--617733	21	2.3	21	83	10	57	52	4	0	44	1.20
617912--617979	23	2.6	28	75	22	92	23	7	2	66	1.31
618056--618107	25	2.1	25	85	0	68	40	3	11	44	1.59
618289--618322	15	2.3	15	90	10	52	29	2	0	67	1.05
618735--618760	12	2.2	12	100	0	52	7	30	0	61	1.24
619833--619872	20	2.0	20	85	0	53	30	22	22	25	1.99
624500--624659	59	2.7	60	83	8	177	39	5	23	31	1.76
624717--624753	15	2.3	17	86	9	51	48	2	2	45	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624772--624811	15	2.7	15	81	14	55	37	10	2	50	1.50
626187--626222	15	2.4	15	95	0	63	41	8	30	19	1.81
629999--630078	29	2.8	29	94	0	133	46	22	8	22	1.79
630093--630134	18	2.3	18	87	0	66	11	19	50	19	1.78
631148--631307	59	2.7	60	81	8	168	39	5	23	32	1.76
631365--631401	15	2.3	17	86	9	51	51	2	0	45	1.15
631420--631459	15	2.7	15	81	14	55	37	10	2	50	1.50
636585--636653	29	2.3	29	80	2	75	42	20	7	30	1.79
636630--636711	28	2.9	28	85	10	112	46	20	9	23	1.80
636730--636770	18	2.3	18	95	0	73	12	21	48	17	1.79
637823--637982	59	2.7	60	83	8	177	39	5	23	31	1.76
638039--638075	15	2.3	17	86	9	51	48	2	2	45	1.30
638094--638133	15	2.7	15	81	14	55	37	10	2	50	1.50
639451--639481	16	1.9	16	93	0	53	22	12	22	41	1.88
640350--640388	21	1.9	20	84	5	51	23	7	7	61	1.49
642730--642783	28	1.9	28	96	0	99	37	16	22	24	1.94
643955--644110	24	6.5	24	80	2	116	25	20	15	39	1.91
644001--644152	24	6.3	24	76	9	78	23	23	16	37	1.93
647138--647184	18	2.6	18	86	0	58	12	21	21	44	1.85
651047--651082	2	18.0	2	100	0	72	50	0	0	50	1.00
652741--652819	35	2.3	34	86	6	113	41	18	0	39	1.51
666243--666286	16	2.8	16	100	0	88	52	9	0	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668850--668954	53	2.0	54	88	1	158	33	19	16	31	1.93
669005--669057	20	2.7	20	93	0	88	26	16	28	28	1.97
672662--672696	10	3.4	11	92	7	56	14	17	8	60	1.58
672926--673032	45	2.3	46	82	4	137	31	16	18	32	1.94
675667--675730	23	2.8	23	92	0	101	39	23	23	14	1.91
675728--675779	23	2.3	23	86	3	70	46	21	7	25	1.77
675781--675832	21	2.5	20	76	11	52	38	23	11	26	1.89
684802--684838	4	9.2	4	100	0	74	75	0	24	0	0.80
686796--686847	23	2.3	23	96	0	95	25	28	28	17	1.97
695137--695241	37	2.8	37	85	0	138	41	14	14	29	1.85
695721--695791	21	3.5	20	72	16	58	25	8	1	64	1.30
697077--697113	19	1.9	19	89	10	58	8	24	0	67	1.17
700576--701113	184	2.9	184	94	0	909	26	20	21	31	1.98
702254--702415	72	2.2	76	82	8	192	29	18	11	40	1.86
702447--702599	39	3.6	39	69	21	119	27	22	13	36	1.92
702502--702820	105	3.1	104	92	2	518	30	20	12	36	1.89
702724--702794	36	2.0	36	88	0	106	25	18	16	39	1.91
702995--703439	105	4.3	105	91	2	695	34	26	17	22	1.95
704009--704046	20	1.9	20	88	0	58	26	7	2	63	1.35
721287--721343	24	2.4	23	80	11	62	50	1	0	47	1.11
721350--721403	21	2.6	21	81	0	63	66	1	3	27	1.19
722433--722480	22	2.2	22	85	3	62	72	4	0	22	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722625--722676	14	3.8	14	73	14	54	53	1	1	42	1.23
722629--722690	27	2.3	27	80	5	72	50	3	3	43	1.34
732766--732823	19	2.8	21	84	10	66	22	34	25	17	1.96
736626--736803	90	2.0	90	92	2	295	37	10	6	45	1.65
741387--741445	30	2.0	30	83	6	75	22	25	18	33	1.96
743650--743757	42	2.6	42	89	0	171	19	16	14	49	1.80
743975--744148	54	3.2	52	76	16	124	50	0	1	47	1.15
743956--744117	28	5.5	28	70	19	84	48	0	1	50	1.13
744080--744132	20	2.7	19	73	18	54	49	0	1	49	1.12
743956--744141	60	3.1	59	77	14	177	48	0	1	49	1.15
744127--744171	23	2.0	23	86	0	63	53	2	2	42	1.25
744474--744507	14	2.4	14	90	0	50	32	14	14	38	1.87
744504--744542	20	2.0	20	84	0	51	33	17	7	41	1.79
744516--744561	15	3.1	15	81	6	67	30	19	8	41	1.82
744692--744729	19	2.0	20	85	10	53	47	0	5	47	1.24
746290--746361	27	2.6	27	86	6	90	26	16	22	34	1.95
746455--746828	187	2.0	187	89	3	574	47	6	3	42	1.46
746778--746835	20	2.9	20	76	7	55	48	0	1	50	1.11
749891--749969	3	26.0	3	86	7	106	31	0	2	65	1.06
755328--755364	4	9.8	4	88	11	60	51	24	0	24	1.49
755314--755366	16	3.1	17	80	19	65	50	24	0	24	1.49
755723--755863	36	3.9	35	77	7	149	31	17	12	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755723--755863	71	2.0	72	84	4	187	31	17	12	39	1.86
755832--756167	104	3.2	102	79	9	385	31	16	12	39	1.85
756120--756245	36	3.5	36	76	6	121	30	18	12	38	1.88
755734--756251	210	2.5	204	71	15	480	31	16	12	40	1.85
756262--756323	30	2.0	30	81	6	70	29	17	16	37	1.92
756283--756341	31	1.9	31	93	3	102	28	13	13	44	1.82
756313--756493	100	1.8	101	85	6	260	31	12	14	41	1.82
756407--756585	64	2.8	64	86	3	234	29	11	15	43	1.81
756575--756637	24	2.4	26	84	10	76	22	9	12	55	1.65
756602--756807	91	2.3	91	83	9	260	27	13	14	44	1.82
757020--757267	134	1.9	134	83	3	329	26	32	16	24	1.96
757380--757443	3	21.0	3	82	9	76	31	0	3	65	1.08
757374--757440	21	3.1	21	87	8	91	31	1	2	64	1.18
769565--769592	14	2.0	14	100	0	56	21	21	21	35	1.96
773337--773379	20	2.2	20	91	0	68	32	11	20	34	1.89
797602--797659	25	2.3	25	85	5	73	31	0	6	62	1.22
799940--799991	20	2.6	20	96	0	95	32	23	21	23	1.98
813879--813911	3	11.0	3	93	0	57	36	0	0	63	0.95
822530--822576	21	2.2	22	88	3	69	17	14	4	63	1.45
830109--830139	6	5.3	6	96	3	55	19	16	16	48	1.81
831705--831752	20	2.4	20	96	0	87	33	22	10	33	1.88
832961--832998	14	2.8	14	92	4	60	42	5	7	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
838538--838579	15	2.8	15	82	10	50	71	0	2	26	0.98
839371--839413	20	2.2	20	91	0	68	32	23	20	23	1.98
839385--839423	20	2.0	20	84	0	51	33	28	20	17	1.96
840331--840400	36	1.9	36	91	0	113	25	20	20	34	1.96
843259--843294	15	2.4	15	100	0	72	13	25	30	30	1.94
849014--849218	19	10.8	19	98	0	392	37	9	25	27	1.87
856395--856443	5	10.0	5	91	4	82	38	22	0	38	1.54
856395--856451	29	2.0	29	100	0	114	36	24	0	38	1.56
856817--856880	23	2.8	23	82	0	92	32	26	25	15	1.95
864305--864384	22	3.7	22	78	21	98	23	21	31	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13