genome.fa.s8480.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008480.1 Hibiscus syriacus cultivar Beakdansim tig00111311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2515485

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  12  of  13  ( 1492 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2300166--2300363	52	3.9	50	68	20	122	48	2	2	47	1.24
2306373--2306458	3	28.3	3	79	6	93	56	0	0	43	0.99
2306373--2306458	28	3.3	26	78	13	70	56	0	0	43	0.99
2306371--2306458	31	2.9	31	82	1	115	56	0	0	43	0.99
2306376--2306449	19	3.9	18	83	16	96	55	0	0	44	0.99
2306603--2306657	20	2.8	20	88	5	76	20	20	30	29	1.97
2306863--2306925	21	2.9	23	68	15	62	17	23	23	34	1.96
2306739--2307115	116	3.2	116	94	0	637	28	20	20	29	1.98
2308405--2308655	53	4.8	52	81	6	283	27	19	13	39	1.90
2308414--2308672	105	2.4	106	89	3	380	26	20	14	38	1.91
2309579--2309708	42	3.1	41	68	11	104	30	20	13	34	1.92
2314737--2314817	43	1.9	43	89	2	128	39	19	9	30	1.84
2315136--2315221	36	2.4	36	92	0	136	26	13	18	40	1.88
2315136--2315233	36	2.7	36	87	0	133	27	14	18	39	1.89
2316787--2316817	2	15.5	2	93	0	53	48	0	0	51	1.00
2318447--2318532	3	28.3	3	83	6	111	59	0	0	40	0.97
2320955--2320990	18	2.0	18	94	0	63	52	5	0	41	1.24
2321236--2321295	21	3.0	21	78	14	81	28	30	26	15	1.96
2321236--2321293	18	3.0	20	80	12	75	27	31	25	15	1.96
2321377--2321423	13	3.5	13	82	11	51	29	27	4	38	1.76
2323821--2323895	23	3.3	22	68	15	62	38	8	21	32	1.82
2323803--2323907	46	2.3	46	93	1	176	41	6	19	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2324056--2324151	38	2.5	38	89	0	147	27	21	27	23	1.99
2329136--2329208	22	3.2	21	67	14	56	41	6	19	32	1.78
2329146--2329220	23	3.3	22	70	15	71	40	8	20	32	1.81
2329120--2329233	46	2.5	46	92	4	189	42	6	18	33	1.75
2329381--2329476	38	2.5	38	86	0	129	26	22	26	25	2.00
2329389--2329453	21	3.3	21	68	24	59	23	29	24	23	1.99
2332515--2332593	19	4.1	19	88	3	104	22	18	30	27	1.98
2332519--2332593	40	1.9	38	86	5	105	21	20	32	26	1.97
2339682--2339869	91	2.1	91	96	0	349	31	17	19	31	1.95
2340983--2341022	20	2.0	20	85	5	53	50	2	2	45	1.28
2341889--2341924	18	1.9	19	88	5	56	50	0	0	50	1.00
2341903--2341941	20	2.0	20	85	5	53	48	0	0	51	1.00
2345564--2345666	23	4.7	23	68	20	78	43	0	19	35	1.58
2345561--2345688	63	2.0	63	93	3	222	39	0	22	37	1.60
2345754--2345784	14	2.2	14	100	0	62	25	0	16	58	1.38
2345892--2345964	34	2.1	34	89	0	110	38	6	5	49	1.53
2346474--2346525	21	2.5	21	78	12	61	25	26	30	17	1.97
2348118--2348156	17	2.3	17	86	0	51	51	0	0	48	1.00
2348139--2348186	22	2.3	20	75	7	51	56	2	0	41	1.11
2348331--2348370	17	2.5	15	80	11	53	50	0	0	50	1.00
2349739--2349794	21	2.7	21	77	5	60	21	7	5	66	1.37
2349836--2349921	32	2.7	32	84	8	97	65	5	6	22	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2350757--2350806	24	2.0	25	84	3	66	48	10	32	10	1.70
2354102--2354185	20	4.2	20	73	3	87	30	22	20	26	1.98
2354138--2354275	20	6.8	20	78	9	106	41	23	14	20	1.89
2354187--2354270	41	2.1	40	91	6	134	45	25	10	19	1.82
2354187--2354270	20	4.2	20	84	3	114	45	25	10	19	1.82
2354379--2354458	22	3.6	22	93	0	133	22	45	15	17	1.85
2354802--2354848	20	2.3	20	96	0	85	53	21	14	10	1.71
2354852--2354889	20	2.0	20	89	5	60	10	18	18	52	1.73
2356545--2356581	14	2.6	14	100	0	74	29	0	21	48	1.50
2356636--2356718	20	4.4	20	69	17	79	37	24	21	16	1.94
2356677--2356725	20	2.5	20	72	0	53	28	22	28	20	1.98
2356740--2356789	20	2.5	20	93	0	82	20	20	16	44	1.87
2359364--2359419	24	2.3	24	93	0	94	41	17	17	23	1.90
2359380--2359431	24	2.2	24	89	0	77	38	21	19	21	1.94
2359541--2359575	12	2.9	12	91	0	52	14	0	31	54	1.40
2360359--2360416	19	3.0	20	89	5	91	31	12	20	36	1.89
2360420--2360485	20	3.3	20	82	0	87	18	15	24	42	1.88
2360398--2360485	40	2.2	41	85	6	117	20	14	23	40	1.90
2360420--2360505	40	2.2	40	85	8	113	18	17	23	40	1.91
2360479--2360566	20	4.3	20	76	2	86	25	19	22	32	1.97
2363001--2363229	20	11.2	20	78	13	209	36	23	17	21	1.95
2363361--2363403	22	2.0	22	90	0	68	23	37	13	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2363608--2363644	12	3.2	12	92	3	58	0	8	16	75	1.02
2363673--2363715	20	2.2	20	91	4	70	44	25	18	11	1.84
2363712--2363753	20	2.1	20	86	0	57	14	19	21	45	1.85
2366502--2366537	14	2.6	14	95	0	63	33	0	22	44	1.53
2366707--2366783	20	4.2	20	66	19	67	19	19	19	41	1.91
2366959--2367045	39	2.2	39	93	0	147	17	13	19	49	1.79
2367352--2367414	6	10.5	6	87	0	90	52	15	1	30	1.53
2367356--2367422	12	5.6	12	83	0	89	47	19	1	31	1.58
2367352--2367422	24	3.0	24	93	0	115	49	18	1	30	1.56
2367356--2367433	24	3.2	24	78	10	79	48	17	2	30	1.61
2367801--2367850	25	2.0	25	96	0	91	44	22	8	26	1.80
2367968--2368013	20	2.3	20	92	0	74	10	17	28	43	1.82
2368299--2368334	18	2.0	18	94	0	63	16	2	25	55	1.55
2370608--2370654	24	2.0	24	86	0	67	34	14	19	31	1.92
2371543--2371893	20	17.6	20	69	11	159	25	16	24	33	1.96
2371558--2371821	40	6.6	40	72	10	191	24	17	23	34	1.96
2371543--2371893	160	2.2	160	93	0	596	25	16	24	33	1.96
2376247--2376308	31	2.0	31	96	0	115	22	14	38	24	1.91
2376312--2376365	22	2.5	22	87	3	83	22	29	33	14	1.94
2376409--2376504	29	3.3	28	82	5	111	20	31	32	15	1.94
2376455--2376526	29	2.5	29	90	4	110	25	27	31	15	1.95
2377988--2378024	2	18.5	2	94	0	65	51	2	0	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2377990--2378030	10	4.1	10	93	0	55	51	7	0	41	1.30
2380254--2380280	3	9.0	3	100	0	54	33	0	0	66	0.92
2381257--2381289	14	2.4	14	90	5	50	42	6	21	30	1.77
2388860--2388973	32	3.5	30	72	20	95	35	17	21	24	1.95
2388856--2388985	67	1.9	67	90	0	206	36	16	21	25	1.93
2389418--2389455	14	2.8	14	88	4	51	57	7	2	31	1.41
2389433--2389495	18	3.3	18	72	12	63	49	4	1	44	1.33
2391191--2391221	10	2.9	11	90	9	55	38	0	6	54	1.26
2412544--2412700	63	2.5	65	81	5	205	33	21	19	26	1.97
2412685--2412785	43	2.3	43	94	0	184	32	19	22	24	1.97
2412712--2412781	20	3.3	20	77	11	86	31	21	22	24	1.98
2412687--2412761	23	3.4	23	72	10	84	33	20	21	25	1.97
2414499--2414541	19	2.3	19	84	8	52	48	2	16	32	1.58
2418985--2419025	21	2.0	21	95	0	73	21	24	17	36	1.94
2418986--2419032	21	2.2	21	88	0	67	25	23	19	31	1.98
2419044--2419168	20	6.2	20	65	14	69	29	26	18	25	1.98
2419102--2419240	40	3.3	40	73	16	145	30	23	17	27	1.97
2419680--2419769	19	4.4	19	74	16	81	30	27	6	35	1.83
2424492--2424564	36	2.0	36	82	10	87	52	2	1	43	1.24
2425360--2425398	3	13.0	3	100	0	78	33	0	0	66	0.92
2430070--2430142	30	2.6	29	82	8	96	45	0	2	52	1.15
2430243--2430310	31	2.3	30	87	5	93	50	4	5	39	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2430877--2430939	19	3.4	19	70	16	60	50	3	3	42	1.34
2430864--2430938	36	2.1	36	94	0	132	52	4	2	41	1.34
2434003--2434122	64	1.9	64	84	5	163	34	17	22	25	1.96
2434113--2434170	20	2.7	20	86	10	71	29	22	22	25	1.99
2435281--2435353	30	2.4	30	95	0	128	24	20	24	30	1.99
2438776--2438897	64	1.9	63	85	5	165	34	18	22	25	1.96
2438778--2438917	64	2.2	63	81	7	158	32	20	22	25	1.98
2439442--2439487	2	23.5	2	95	4	85	47	0	0	52	1.00
2440033--2440114	31	2.6	31	72	0	83	30	13	21	34	1.92
2440106--2440172	30	2.2	30	94	0	116	25	16	23	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13