genome.fa.s8488.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008488.1 Hibiscus syriacus cultivar Beakdansim tig00111330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12876159

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  37  of  54  ( 6450 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8909292--8909717	55	7.8	55	84	1	514	32	19	18	28	1.96
8913920--8913956	17	2.2	17	100	0	74	27	32	16	24	1.96
8916478--8916524	21	2.2	21	84	0	58	29	0	23	46	1.52
8917119--8917159	14	2.8	15	92	3	66	46	0	0	53	1.00
8922389--8922425	18	2.0	20	89	10	60	72	8	18	0	1.08
8922373--8922459	33	2.7	32	79	12	88	74	8	13	3	1.17
8922414--8922450	13	2.8	13	95	4	65	75	8	10	5	1.17
8922397--8922472	10	7.5	10	72	7	64	78	5	13	2	1.02
8922397--8922470	21	3.7	20	70	7	51	79	5	12	2	1.00
8924433--8924463	16	1.9	16	100	0	62	19	48	0	32	1.49
8926721--8926798	23	3.4	23	70	18	65	29	21	23	25	1.99
8926721--8926780	21	2.7	22	75	14	61	26	23	21	28	1.99
8935235--8935316	23	3.7	22	75	15	71	25	29	25	19	1.99
8935246--8935290	23	2.0	23	90	0	72	22	26	26	24	2.00
8935278--8935322	21	2.2	21	84	7	58	26	28	31	13	1.94
8942859--8942922	32	2.0	32	87	0	92	26	15	28	29	1.96
8943052--8943146	37	2.6	37	82	11	124	28	16	14	40	1.88
8943052--8943150	35	2.7	35	86	6	119	27	18	14	40	1.89
8944652--8944693	21	2.0	22	90	4	68	28	16	26	28	1.97
8951995--8952039	19	2.4	19	88	0	63	28	28	22	20	1.98
8952010--8952069	10	6.1	10	75	11	61	31	25	21	21	1.98
8952005--8952059	19	2.8	19	80	5	56	32	27	21	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8962940--8962983	12	3.7	12	78	0	52	36	25	9	29	1.86
8966222--8966275	28	1.9	28	88	7	83	29	5	11	53	1.59
8966220--8966291	28	2.6	26	78	10	81	34	8	9	47	1.67
8971765--8972243	240	2.0	240	91	0	771	29	19	19	30	1.97
8972712--8972771	18	3.1	19	81	13	86	50	6	8	35	1.59
8975355--8975410	20	2.8	20	91	0	85	28	14	32	25	1.94
8975319--8975389	36	1.9	37	88	2	108	28	21	28	22	1.99
8975847--8976272	36	11.8	36	84	3	394	40	16	12	30	1.86
8975847--8976275	72	6.0	72	83	3	465	40	16	12	30	1.86
8975847--8976275	108	4.0	107	82	3	463	40	16	12	30	1.86
8977150--8977261	51	2.2	51	83	1	136	46	21	4	27	1.70
8977254--8977460	51	4.1	51	88	2	274	39	18	11	30	1.87
8977254--8977453	101	2.0	102	87	3	287	39	19	12	30	1.87
8979380--8979440	22	2.8	22	89	0	95	29	13	24	32	1.93
8986399--8986432	3	11.7	3	87	6	52	67	0	2	29	1.05
8987903--8987974	31	2.3	31	87	0	108	29	11	11	48	1.73
8989621--8989662	19	2.2	19	86	0	57	83	9	4	2	0.88
9001375--9001413	20	1.9	21	89	5	62	23	38	25	12	1.90
9001387--9001434	22	2.2	23	81	7	55	22	45	20	10	1.81
9005935--9006085	37	4.1	37	82	8	114	29	17	12	39	1.87
9005958--9006085	37	3.5	37	84	4	170	29	18	11	39	1.86
9006467--9006865	137	3.0	134	85	4	524	26	29	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9006616--9006865	128	2.0	128	87	0	365	26	30	17	25	1.97
9028350--9028670	160	2.0	161	99	0	635	16	18	18	46	1.84
9034503--9034552	2	25.0	2	100	0	100	50	0	0	50	1.00
9035707--9035744	19	2.0	19	89	0	58	28	18	34	18	1.95
9045603--9045660	23	2.7	20	78	17	71	29	18	17	34	1.94
9046148--9046182	12	2.8	12	91	4	52	37	11	5	45	1.64
9052084--9052132	19	2.6	19	93	0	80	30	18	26	24	1.98
9053765--9053824	23	2.8	20	76	16	66	33	16	13	36	1.88
9054303--9054343	12	3.4	12	83	9	57	36	7	7	48	1.59
9056501--9056553	20	2.7	20	93	0	88	26	30	18	24	1.98
9067783--9067855	20	3.7	19	83	8	83	36	9	19	34	1.84
9067926--9067959	17	2.1	17	88	5	52	35	17	11	35	1.87
9068002--9068048	20	2.3	20	92	0	76	42	12	4	40	1.63
9073948--9073976	13	2.2	13	100	0	58	34	0	6	58	1.25
9081870--9081904	16	2.1	17	94	5	63	42	25	0	31	1.55
9087909--9087934	12	2.2	12	100	0	52	46	7	15	30	1.74
9089392--9089440	13	3.8	13	86	0	62	30	18	18	32	1.95
9089603--9089671	2	34.5	2	100	0	138	49	0	0	50	1.00
9094106--9094146	20	2.2	20	86	8	59	65	2	0	31	1.05
9100408--9100458	17	3.0	17	85	0	75	41	5	15	37	1.72
9102848--9102951	50	2.1	50	96	1	192	30	7	18	43	1.78
9104200--9104257	21	2.8	21	97	0	107	15	27	29	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9106161--9106239	40	2.0	40	97	0	149	18	17	32	30	1.95
9108711--9108771	23	2.7	23	89	2	88	19	26	31	22	1.98
9114567--9114596	11	2.7	11	89	0	51	46	0	3	50	1.18
9117111--9117157	8	6.0	8	76	14	53	25	0	0	74	0.82
9117109--9117158	17	2.9	17	85	11	66	28	0	0	72	0.86
9120061--9120104	14	3.1	14	80	3	52	20	9	0	70	1.14
9121772--9121914	75	1.9	73	83	11	182	29	2	11	55	1.50
9122522--9122554	4	8.0	4	93	6	57	24	0	0	75	0.80
9122617--9122665	15	3.2	15	80	5	62	22	2	0	75	0.90
9122619--9122665	16	3.0	16	73	17	53	21	2	0	76	0.89
9122619--9122660	21	1.9	22	85	9	59	19	2	0	78	0.86
9124239--9124307	12	5.8	12	72	6	50	52	13	14	20	1.74
9124236--9124344	48	2.3	48	82	6	132	48	14	15	21	1.80
9124236--9124344	24	4.5	25	72	11	84	48	14	15	21	1.80
9126820--9126860	13	3.4	13	77	19	52	14	21	46	17	1.84
9126844--9126878	18	1.9	18	88	0	52	17	14	45	22	1.84
9128818--9128886	12	5.8	12	69	6	50	43	20	15	20	1.88
9133485--9133525	17	2.5	17	80	11	50	48	14	14	21	1.80
9133947--9134022	38	2.0	38	97	0	143	19	11	10	57	1.62
9133957--9134019	20	3.2	20	66	8	58	22	11	9	57	1.62
9134268--9134349	40	2.0	40	95	0	146	46	6	0	47	1.27
9134324--9134353	15	1.9	16	93	6	53	50	6	0	43	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9135840--9135891	22	2.4	21	84	6	77	13	30	26	28	1.94
9138540--9138926	43	8.9	43	85	3	447	18	23	22	34	1.96
9138553--9138926	173	2.2	173	84	5	488	19	22	22	34	1.96
9145116--9145389	29	9.5	29	78	9	211	47	12	4	36	1.60
9145116--9145372	58	4.5	58	84	3	306	46	12	3	36	1.61
9145138--9145396	87	3.0	87	81	5	292	46	13	4	35	1.63
9145289--9145417	58	2.2	58	83	2	152	51	11	5	31	1.60
9151985--9152096	31	3.6	31	96	0	197	39	25	17	17	1.92
9156312--9156529	31	7.0	31	93	1	357	38	22	18	21	1.94
9158650--9158695	20	2.3	20	96	0	83	41	13	8	36	1.75
9159041--9159249	28	7.3	28	83	9	264	45	13	1	39	1.53
9159041--9159361	29	11.2	29	83	7	291	48	12	2	37	1.53
9159058--9159361	28	10.6	29	80	7	198	48	12	2	36	1.54
9161045--9161084	21	2.0	21	90	5	64	60	0	2	37	1.11
9161094--9161165	15	5.1	15	69	17	55	43	0	2	54	1.15
9161077--9161160	42	2.0	42	93	2	143	42	2	4	50	1.36
9161095--9161163	19	3.5	19	69	16	59	44	0	2	52	1.16
9162047--9162238	20	9.6	20	72	8	113	38	24	18	18	1.93
9162042--9162260	40	5.5	40	80	6	212	38	25	17	19	1.93
9162047--9162260	60	3.5	60	75	8	179	38	24	17	18	1.92
9162108--9162258	20	7.5	20	72	10	128	38	25	17	19	1.93
9162821--9162899	20	3.9	21	86	5	94	51	17	18	11	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9162898--9162942	19	2.4	19	88	0	63	46	24	15	13	1.82
9162962--9163025	14	4.2	14	78	18	74	9	25	20	45	1.80
9162974--9163079	33	3.0	33	78	10	113	12	23	18	45	1.83
9162943--9163070	47	2.5	50	85	8	154	10	23	19	46	1.81
9163032--9163078	20	2.3	21	85	10	71	10	25	14	48	1.76
9164767--9165145	94	4.1	94	94	3	640	21	12	19	47	1.82
9164767--9165145	187	2.0	187	92	3	638	21	12	19	47	1.82
9165237--9165326	33	2.7	33	87	0	117	46	24	18	10	1.80
9165193--9165331	19	7.7	19	69	18	73	46	23	17	12	1.82
9165295--9165332	19	2.0	19	100	0	76	47	31	15	5	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54