genome.fa.s8488.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008488.1 Hibiscus syriacus cultivar Beakdansim tig00111330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12876159

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  49  of  54  ( 6450 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11587581--11587667	11	7.9	11	68	25	51	44	0	0	55	0.99
11587580--11587662	35	2.4	35	84	13	111	45	0	0	54	0.99
11587665--11587721	21	2.9	18	76	16	60	40	0	0	59	0.97
11587670--11587722	18	2.6	22	80	17	69	37	0	0	62	0.96
11588486--11588535	24	2.0	26	84	11	68	70	12	16	2	1.26
11588506--11588543	19	2.0	20	85	15	53	71	7	21	0	1.11
11589547--11589603	30	1.9	30	85	0	78	24	7	5	63	1.41
11590611--11590660	20	2.5	21	80	6	59	40	0	6	54	1.25
11590684--11590715	2	16.0	2	100	0	64	50	0	0	50	1.00
11595865--11595912	21	2.4	19	80	13	51	35	8	14	41	1.76
11596881--11596947	33	2.0	33	94	0	116	38	11	19	29	1.88
11599716--11599961	133	1.8	133	93	0	429	37	13	13	35	1.84
11602289--11602328	20	2.0	21	85	5	55	27	17	20	35	1.95
11605006--11605055	26	1.9	26	91	0	82	32	28	16	24	1.96
11606610--11606672	31	2.0	31	90	0	99	38	33	3	25	1.72
11611796--11611849	2	27.0	2	100	0	108	50	0	0	50	1.00
11617168--11617279	58	1.9	59	92	1	190	53	8	6	31	1.57
11618324--11618406	31	2.7	31	79	3	89	38	15	10	34	1.83
11618845--11618952	47	2.3	47	98	0	207	19	20	23	37	1.95
11618934--11619019	32	2.7	32	94	0	154	6	25	32	34	1.83
11619158--11619265	51	2.2	49	85	8	139	44	12	17	25	1.84
11621445--11621571	23	5.7	22	75	15	93	41	4	4	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11621427--11621520	37	2.5	37	98	0	179	40	4	5	50	1.45
11621484--11621571	23	3.6	23	85	14	131	42	4	4	48	1.44
11621530--11621631	42	2.6	40	85	11	131	41	3	5	49	1.45
11624098--11624123	13	2.0	13	100	0	52	53	23	0	23	1.46
11624358--11624439	33	2.6	32	86	7	114	39	25	23	12	1.89
11624479--11624517	20	2.0	20	94	0	69	17	43	12	25	1.85
11624898--11624983	40	2.2	39	83	6	102	29	15	24	31	1.95
11625750--11625830	39	2.0	40	88	2	119	46	16	4	32	1.68
11627579--11627659	5	16.8	5	78	7	78	77	13	2	6	1.05
11627583--11627654	19	3.7	19	96	1	126	76	15	2	5	1.09
11627579--11627663	10	8.8	10	76	7	86	77	12	2	7	1.06
11627895--11628075	3	61.7	3	75	14	119	69	2	2	25	1.14
11645651--11645727	32	2.4	31	82	8	84	75	6	2	15	1.12
11645647--11645734	5	17.6	5	71	13	65	76	5	2	15	1.08
11645639--11645735	50	2.0	49	87	6	142	76	5	2	16	1.06
11645885--11645942	2	29.0	2	100	0	116	50	0	0	50	1.00
11645942--11645980	2	19.5	2	100	0	78	0	0	48	51	1.00
11646048--11646096	3	17.0	3	83	12	59	71	0	0	28	0.86
11646170--11646194	2	12.5	2	100	0	50	52	0	0	48	1.00
11647440--11647498	31	1.9	31	89	3	93	37	0	1	61	1.07
11647944--11648084	38	3.8	38	80	11	148	41	2	4	51	1.38
11647974--11648036	17	3.2	21	65	26	57	41	0	6	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11647960--11648078	37	3.0	40	75	18	117	41	2	4	52	1.34
11648241--11648315	37	2.0	38	94	2	134	30	14	13	41	1.84
11649547--11649579	14	2.4	14	100	0	66	30	9	9	51	1.64
11650406--11650478	32	2.3	32	87	0	101	30	21	27	20	1.98
11652182--11652260	23	3.5	23	71	3	61	31	24	24	20	1.98
11652501--11652547	18	2.7	18	83	3	60	42	21	6	29	1.77
11672418--11672445	2	14.0	2	100	0	56	50	0	0	50	1.00
11672598--11672691	23	4.1	23	80	0	98	38	26	17	18	1.92
11680191--11680279	45	1.9	47	86	4	128	25	11	23	39	1.88
11689894--11690130	7	35.7	7	71	20	74	76	0	15	8	1.00
11689912--11690130	14	17.0	13	73	16	113	78	0	14	7	0.96
11689892--11690125	25	9.6	25	70	16	77	76	0	15	7	1.00
11689949--11690132	19	9.9	18	68	21	78	77	0	15	7	0.97
11689913--11690072	48	3.2	48	75	16	141	79	0	13	7	0.93
11689934--11689995	5	12.4	5	79	19	67	79	0	17	3	0.87
11689922--11690099	36	4.9	36	75	13	120	78	0	15	6	0.95
11689912--11690067	11	13.5	11	70	20	79	79	0	12	7	0.93
11689895--11690073	56	3.2	53	74	22	147	78	0	13	8	0.97
11689976--11690125	78	1.9	78	80	12	175	78	0	15	6	0.95
11691484--11691979	55	9.1	55	87	4	609	27	16	25	30	1.97
11691487--11692000	218	2.4	219	82	6	562	27	16	25	30	1.96
11696959--11697001	20	2.1	21	86	4	61	25	0	23	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11697628--11697706	31	2.6	31	78	9	90	37	7	11	43	1.69
11714403--11714461	20	3.0	20	84	0	73	22	18	18	40	1.91
11717213--11717247	18	1.9	18	94	0	61	25	34	20	20	1.96
11722150--11722201	26	2.0	26	100	0	104	23	38	15	23	1.92
11722822--11722855	14	2.3	15	90	5	52	50	11	8	29	1.69
11736161--11736229	23	3.0	23	86	0	102	33	26	24	15	1.95
11737885--11737962	20	3.7	20	93	6	120	25	23	20	30	1.98
11741553--11741617	23	2.8	23	85	0	94	30	24	26	18	1.98
11743275--11743332	20	2.6	22	89	10	84	25	22	20	31	1.98
11743320--11743460	64	2.2	63	81	7	169	26	23	17	32	1.97
11744207--11744302	44	2.2	44	100	0	192	35	10	30	23	1.89
11747821--11747856	18	2.0	18	100	0	72	16	22	11	50	1.77
11748730--11748772	12	3.8	11	81	12	52	46	16	16	20	1.84
11748730--11748772	22	2.0	22	90	0	68	46	16	16	20	1.84
11748931--11748959	6	4.8	6	100	0	58	34	17	0	48	1.47
11749255--11749282	6	4.7	6	100	0	56	50	17	0	32	1.47
11749587--11749751	32	5.2	32	80	9	153	32	15	18	34	1.92
11749587--11749751	64	2.6	64	78	12	180	32	15	18	34	1.92
11752440--11752477	3	12.7	3	94	0	67	31	0	2	65	1.06
11754599--11754669	24	3.0	24	77	2	81	30	23	23	21	1.99
11754783--11754848	23	2.9	23	88	0	96	28	25	25	19	1.99
11755670--11755722	2	27.5	2	92	7	92	52	47	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11755670--11755722	19	2.8	19	97	2	99	52	47	0	0	1.00
11755722--11755758	2	18.5	2	100	0	74	51	0	0	48	1.00
11757165--11757212	3	15.7	3	91	4	78	68	0	31	0	0.90
11759310--11759356	15	3.2	15	81	6	60	65	2	6	25	1.27
11761398--11761429	13	2.5	13	94	0	55	25	21	28	25	1.99
11761449--11761473	13	1.9	13	100	0	50	20	8	40	32	1.81
11764185--11764234	25	2.0	25	88	7	75	66	0	0	34	0.92
11767868--11767904	14	2.6	14	100	0	74	0	51	0	48	1.00
11768249--11768289	19	2.3	19	83	8	50	46	2	2	48	1.28
11768411--11768451	19	2.3	19	83	8	50	46	2	2	48	1.28
11768225--11768551	162	2.0	165	98	1	633	45	6	4	42	1.52
11769840--11769886	25	1.9	24	86	4	67	44	31	10	12	1.77
11770626--11770660	2	18.0	2	94	5	63	0	51	0	48	1.00
11771136--11771263	58	2.2	57	82	6	152	23	8	8	59	1.55
11773229--11773272	23	1.9	23	90	9	72	29	6	11	52	1.63
11781028--11781490	231	2.0	232	98	1	903	35	14	20	28	1.93
11783587--11784260	111	6.1	111	84	5	740	31	24	15	27	1.96
11783648--11784260	223	2.7	220	84	5	759	31	24	16	27	1.96
11788496--11788692	104	1.9	103	94	1	349	27	12	18	41	1.87
11789220--11789311	40	2.3	41	90	5	143	50	13	4	32	1.61
11789417--11789482	15	4.4	15	81	7	71	9	6	36	48	1.60
11789460--11789506	15	3.1	15	87	0	58	4	14	29	51	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11789480--11789515	15	2.4	15	95	0	63	5	19	27	47	1.72
11791722--11791824	41	2.5	41	87	6	136	20	42	9	27	1.83
11796904--11796966	23	2.7	23	90	0	108	33	26	20	19	1.96
11797295--11797662	184	2.0	185	95	1	668	41	3	9	45	1.53
11798700--11798733	17	2.1	16	88	5	50	76	0	8	14	1.01
11799207--11799256	24	2.1	24	81	7	57	60	14	2	24	1.45
11802546--11802605	23	2.4	26	73	21	65	68	1	16	13	1.29
11808939--11808972	17	2.1	16	88	5	50	76	0	8	14	1.01
11809447--11809496	24	2.1	24	88	7	75	60	10	2	28	1.40
11813432--11813486	21	2.6	21	94	0	92	36	16	25	21	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54