genome.fa.s851.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000851.1 Hibiscus syriacus cultivar Beakdansim tig00001644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7304151

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  11  of  31  ( 3618 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2902561--2902603	22	2.0	22	100	0	86	51	13	0	34	1.42
2902563--2902611	22	2.2	22	88	3	71	55	14	0	30	1.40
2902615--2902679	22	3.0	22	95	0	112	49	12	0	38	1.41
2902083--2902733	80	8.3	77	81	11	672	52	13	0	34	1.42
2902691--2902733	22	2.0	22	100	0	86	51	13	0	34	1.42
2902693--2902741	22	2.2	22	88	3	71	55	14	0	30	1.40
2902747--2902821	22	3.2	22	75	14	69	54	18	0	26	1.44
2902798--2902854	18	3.4	18	69	18	59	54	12	0	33	1.38
2902816--2902980	15	10.5	15	77	14	163	50	3	0	44	1.23
2905139--2905172	15	2.3	15	94	0	59	35	14	29	20	1.93
2905916--2905975	23	2.6	22	84	5	66	20	26	20	33	1.97
2905924--2905980	23	2.5	23	85	0	69	22	22	24	29	1.99
2905982--2906032	24	2.2	24	85	3	68	19	21	19	39	1.93
2906130--2906168	6	6.5	6	81	0	51	48	0	17	33	1.48
2910644--2910729	42	2.0	42	80	8	95	37	5	16	40	1.72
2911141--2911202	23	2.7	23	80	7	81	19	25	22	32	1.97
2916494--2916518	2	12.5	2	100	0	50	48	0	0	52	1.00
2916748--2916791	18	2.4	19	92	3	72	9	6	6	77	1.13
2919658--2919766	29	3.7	29	90	4	164	32	4	13	49	1.63
2920184--2920213	14	2.1	14	93	0	51	66	3	6	23	1.30
2920556--2920586	16	1.9	16	93	0	53	32	0	0	67	0.91
2922257--2922321	24	2.7	24	97	0	121	30	23	9	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2923062--2923250	65	2.9	65	87	1	272	29	13	22	34	1.92
2923418--2923474	17	3.4	16	73	20	53	63	7	15	14	1.51
2923445--2923477	17	1.9	17	93	0	57	63	9	18	9	1.49
2923583--2923615	17	1.9	17	93	0	57	45	6	15	33	1.70
2924982--2925014	12	2.5	13	90	9	50	69	3	0	27	1.03
2925121--2925528	2	205.5	2	64	19	108	45	4	4	45	1.44
2925121--2925528	11	38.3	11	67	17	85	45	4	4	45	1.44
2925240--2925306	33	2.1	31	88	5	98	46	4	5	43	1.48
2925300--2925536	9	26.7	9	65	21	65	45	2	4	46	1.37
2925321--2925699	20	19.3	20	70	17	167	45	4	4	45	1.44
2925591--2925645	22	2.6	21	88	5	76	47	3	3	45	1.38
2925632--2925688	21	2.6	22	78	10	64	49	3	1	45	1.29
2925672--2925706	2	17.5	2	100	0	70	48	0	0	51	1.00
2925726--2926172	22	21.5	20	68	21	105	54	2	7	36	1.42
2925746--2926156	15	28.8	14	69	22	145	54	2	7	36	1.41
2925829--2925931	2	53.0	2	72	19	67	52	1	2	42	1.27
2925794--2925929	28	4.7	28	74	13	98	53	2	4	39	1.33
2925746--2926179	60	7.1	60	71	19	249	53	2	6	36	1.41
2925768--2926145	73	5.6	67	72	19	261	53	2	6	36	1.40
2925986--2926067	27	3.2	27	65	28	70	57	2	4	35	1.33
2926135--2926187	21	2.5	21	87	3	70	49	3	7	39	1.49
2926163--2926238	11	6.7	11	73	11	64	46	6	2	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2926129--2926238	35	3.2	33	77	13	105	48	5	4	41	1.47
2926191--2926295	20	5.2	20	72	14	90	45	10	4	39	1.60
2926191--2926252	22	2.9	22	85	4	74	46	11	3	38	1.56
2926279--2926337	22	2.8	20	87	9	91	47	1	3	47	1.29
2926279--2926358	11	7.5	11	71	17	62	47	1	3	47	1.28
2926259--2926358	22	4.8	21	71	18	75	46	3	4	47	1.36
2927202--2927273	31	2.3	31	82	0	90	25	34	26	13	1.93
2927313--2927414	31	3.2	31	68	15	89	37	20	20	21	1.95
2933671--2933739	23	3.0	23	83	6	86	49	14	7	28	1.70
2933682--2933739	23	2.5	23	91	5	91	50	13	6	29	1.68
2935473--2935510	11	3.5	11	89	7	51	21	2	0	76	0.91
2935972--2936025	16	3.4	16	86	0	72	22	22	14	40	1.90
2936414--2937061	2	320.5	2	64	24	95	51	2	7	38	1.45
2936408--2936825	111	3.7	111	74	13	310	51	2	7	38	1.44
2936466--2936705	60	4.2	59	73	15	191	52	2	7	37	1.42
2936443--2937054	161	3.9	157	73	19	429	51	2	7	37	1.45
2936800--2937223	22	19.8	22	70	21	117	52	3	6	37	1.43
2936906--2937264	107	3.4	103	68	23	125	53	2	6	37	1.40
2937088--2937258	57	3.0	55	77	13	166	55	2	5	36	1.35
2936487--2937264	8	103.5	8	66	26	122	52	2	7	37	1.43
2936900--2937272	35	10.5	35	72	18	168	53	2	6	37	1.40
2937251--2937497	82	3.0	82	91	1	397	50	5	7	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2938912--2938963	21	2.5	21	90	0	86	40	17	17	25	1.90
2941494--2941571	23	3.3	23	81	1	93	32	23	20	24	1.98
2941578--2941898	103	3.1	103	96	0	579	37	23	13	26	1.92
2946488--2946565	23	3.3	23	81	1	93	32	23	20	24	1.98
2946572--2946883	103	3.1	103	92	4	525	36	23	13	26	1.92
2958139--2958172	11	3.1	11	91	0	50	23	17	17	41	1.90
2959768--2959807	18	2.2	18	86	4	53	20	5	5	70	1.26
2960461--2960523	31	2.0	31	96	0	117	19	22	7	50	1.72
2960957--2960998	15	2.6	16	82	17	52	61	0	4	33	1.17
2963113--2963166	3	17.0	3	84	3	54	57	1	1	38	1.20
2963383--2963797	134	3.1	134	85	4	534	32	18	19	29	1.96
2964358--2964698	45	7.4	45	78	4	254	41	19	16	23	1.90
2964358--2964698	90	3.7	88	77	8	283	41	19	16	23	1.90
2964695--2965087	38	10.2	38	86	2	518	42	17	17	23	1.89
2965901--2965995	42	2.3	41	83	7	129	32	24	20	23	1.98
2965485--2966514	257	4.0	256	88	2	1465	34	17	15	32	1.91
2965490--2966520	513	2.0	516	88	2	1556	35	17	15	31	1.91
2966402--2966508	42	2.6	41	83	2	142	30	22	21	25	1.99
2968269--2968312	21	2.0	22	82	4	54	4	20	0	75	0.98
2968302--2968362	19	3.2	19	84	9	70	3	24	0	72	1.00
2968278--2968362	16	4.7	19	72	18	67	4	23	0	71	1.04
2972430--2972471	15	2.6	16	82	17	52	61	0	4	33	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2974665--2974724	12	4.8	12	82	15	68	55	1	1	41	1.20
2976005--2976057	11	4.7	11	82	15	56	79	0	3	16	0.88
2976075--2976140	24	2.9	23	71	13	64	69	4	9	16	1.31
2977298--2977337	21	1.9	21	85	10	55	35	15	17	32	1.91
2977348--2977396	19	2.6	20	87	6	59	20	26	30	22	1.98
2977395--2977438	17	2.5	17	88	3	61	20	47	25	6	1.74
2977407--2977444	17	2.2	17	95	0	67	21	44	21	13	1.85
2977433--2977469	18	2.1	18	89	0	56	18	32	24	24	1.97
2979721--2979781	2	31.5	2	93	6	108	50	0	0	49	1.00
2979765--2979884	34	3.5	34	90	3	195	45	5	3	45	1.44
2979609--2979894	152	1.9	146	84	8	380	46	5	2	45	1.38
2980738--2981143	85	4.8	85	86	1	499	25	18	21	34	1.96
2986617--2986731	24	4.8	24	82	2	115	44	14	14	26	1.84
2988968--2989056	35	2.5	36	85	3	117	43	6	0	49	1.29
2988967--2989219	39	6.6	37	70	21	125	45	7	1	45	1.42
2988985--2989141	41	3.9	39	75	16	126	45	7	0	47	1.34
2989089--2989171	34	2.4	35	93	4	141	46	7	1	44	1.38
2989087--2989208	34	3.3	37	82	15	139	45	7	2	44	1.44
2989223--2989270	23	2.0	26	84	12	66	43	6	2	47	1.40
2989323--2989457	47	2.9	47	79	11	150	42	8	14	34	1.75
2991118--2991172	29	1.9	28	88	3	83	29	27	12	30	1.93
2994930--2995016	35	2.5	34	80	12	97	55	10	8	26	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2995592--2995643	18	2.9	18	94	0	86	26	15	28	28	1.96
2997320--2997360	18	2.3	18	87	4	57	63	2	7	26	1.33
2998420--2998467	22	2.1	23	85	11	64	41	10	0	47	1.37
2998502--2998540	18	2.1	19	85	9	53	17	5	0	76	0.96
3001804--3001952	47	3.2	47	92	1	239	38	4	20	35	1.74
3002423--3002472	20	2.4	21	90	3	75	20	24	20	36	1.95
3004719--3004776	6	9.8	6	76	12	50	79	0	15	5	0.90
3004716--3004782	29	2.4	28	77	20	77	77	0	16	5	0.95
3004791--3004816	2	13.0	2	100	0	52	50	0	0	50	1.00
3008651--3008846	47	4.2	47	93	1	315	39	5	19	35	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31