genome.fa.s851.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000851.1 Hibiscus syriacus cultivar Beakdansim tig00001644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7304151

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  7  of  31  ( 3618 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1810163--1810205	20	2.2	19	87	4	59	13	25	39	20	1.90
1817152--1817190	18	2.4	16	87	12	53	10	23	2	64	1.37
1818659--1818688	4	7.5	4	100	0	60	53	0	23	23	1.46
1822462--1822508	20	2.3	20	92	0	76	38	8	21	31	1.83
1822937--1823056	59	2.0	59	96	0	222	54	3	13	29	1.55
1824601--1824683	41	2.0	41	100	0	166	26	16	12	44	1.83
1829990--1830042	22	2.5	22	93	3	90	50	5	24	18	1.68
1833058--1833104	24	2.0	24	95	0	85	36	31	2	29	1.70
1841519--1841643	32	3.8	31	77	11	101	51	6	14	28	1.67
1841583--1841644	32	1.9	32	93	0	106	51	4	16	27	1.64
1841747--1841779	4	8.2	4	100	0	66	75	0	0	24	0.80
1842814--1842874	30	2.0	30	100	0	122	29	16	19	34	1.94
1843843--1843933	29	3.2	29	66	20	73	30	2	10	56	1.46
1843843--1843955	57	2.0	55	91	3	181	32	1	11	53	1.47
1849858--1849955	29	3.3	29	83	8	108	39	9	12	38	1.75
1850039--1850094	28	2.1	26	83	12	69	37	5	14	42	1.68
1854275--1854319	19	2.4	18	82	10	54	44	2	0	53	1.13
1854799--1854844	23	2.0	24	82	4	58	21	43	0	34	1.53
1855100--1855160	17	3.6	16	72	22	52	31	0	3	65	1.09
1855103--1855170	36	1.9	35	82	8	84	33	0	4	61	1.16
1861534--1861650	59	2.0	59	84	0	153	30	16	23	29	1.96
1865737--1865916	59	3.1	59	83	4	231	28	15	23	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1866376--1866432	16	3.6	16	92	4	89	38	5	10	45	1.61
1866672--1866838	60	2.8	59	77	9	169	34	22	2	40	1.67
1867213--1867250	19	2.1	18	85	9	51	68	0	0	31	0.90
1871845--1871994	77	1.9	79	85	8	209	44	8	4	43	1.52
1876595--1876951	50	7.1	50	82	4	360	26	19	14	40	1.90
1877869--1877954	41	2.1	41	82	4	102	32	17	18	31	1.94
1877891--1877969	41	1.9	41	84	0	104	29	18	18	32	1.96
1877932--1878203	132	2.1	131	79	3	296	31	18	18	31	1.95
1883128--1883481	47	7.6	47	89	2	525	21	20	14	43	1.87
1883368--1883448	27	3.3	27	68	22	86	19	20	14	44	1.86
1887753--1887808	24	2.3	24	93	0	103	28	23	14	33	1.94
1889938--1890376	47	9.4	47	89	3	674	19	21	14	44	1.86
1890056--1890228	20	7.6	20	66	24	67	19	23	15	41	1.89
1890249--1890321	20	3.3	20	70	23	56	20	24	13	41	1.89
1889938--1890376	140	3.1	141	90	2	674	19	21	14	44	1.86
1891059--1891243	51	3.7	51	80	9	190	36	14	18	30	1.91
1901598--1901640	20	2.2	20	86	0	59	30	11	20	37	1.89
1901871--1901924	27	2.0	27	96	0	99	29	24	22	24	1.99
1909586--1909620	14	2.6	14	90	4	54	85	0	14	0	0.59
1910214--1910255	20	2.1	20	86	0	57	30	9	21	38	1.85
1916590--1917008	54	7.8	54	90	2	601	32	21	15	30	1.95
1916590--1916994	161	2.5	162	90	1	625	31	22	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1916587--1917143	54	10.3	54	84	5	249	32	20	16	30	1.95
1917371--1917458	46	1.9	46	88	0	131	44	13	17	25	1.85
1921753--1921790	19	2.0	19	100	0	76	42	10	15	31	1.81
1923497--1923842	174	2.0	174	89	1	525	34	13	16	34	1.88
1934221--1934251	14	2.1	15	94	5	55	0	6	9	83	0.79
1934818--1934953	68	2.0	68	100	0	272	38	16	10	35	1.82
1942239--1942269	14	2.1	15	94	5	55	0	6	9	83	0.79
1950348--1950394	20	2.4	19	80	16	51	25	0	2	72	0.96
1952578--1952624	23	2.0	23	87	0	67	38	25	19	17	1.92
1952592--1952657	23	2.9	23	79	0	69	36	24	22	16	1.94
1952807--1952847	19	2.3	18	88	12	59	43	19	7	29	1.78
1959490--1959569	23	3.5	23	82	3	90	36	27	16	20	1.93
1960345--1960392	19	2.5	20	89	6	80	22	14	16	45	1.84
1974648--1974673	6	4.3	6	100	0	52	84	0	0	15	0.62
2005829--2005918	46	2.0	46	90	0	144	23	21	12	43	1.86
2006290--2006642	54	6.6	54	85	0	447	31	17	21	30	1.96
2006290--2006642	162	2.2	161	87	1	492	31	17	21	30	1.96
2013295--2013538	121	2.0	121	97	1	463	30	24	18	27	1.97
2020276--2020683	176	2.3	174	77	10	391	40	10	11	37	1.75
2027287--2027329	21	2.1	20	86	4	59	51	9	6	32	1.61
2028942--2029001	21	2.9	21	74	0	66	11	28	36	23	1.90
2030623--2030686	32	2.0	32	100	0	128	28	25	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2031599--2031886	139	2.0	144	87	4	424	38	16	23	21	1.93
2040657--2040695	11	3.5	11	85	3	51	41	0	2	56	1.13
2046066--2046112	23	2.0	23	83	0	58	36	14	6	42	1.72
2046316--2046348	15	2.1	17	88	11	52	15	6	0	78	0.93
2046641--2046683	21	2.1	20	86	4	59	51	9	4	34	1.55
2053537--2053644	55	2.0	55	83	0	135	31	23	17	27	1.97
2053540--2053662	55	2.2	55	78	5	131	30	23	17	27	1.97
2053591--2053840	109	2.3	108	80	5	263	26	21	18	34	1.96
2053591--2053841	54	4.6	55	79	7	253	26	21	18	33	1.96
2056081--2056126	20	2.3	20	85	3	67	39	0	23	36	1.55
2057484--2057548	24	2.7	24	76	9	69	27	18	13	40	1.89
2057532--2057610	24	3.3	24	73	7	79	20	20	17	41	1.90
2066330--2066375	2	23.0	2	100	0	92	50	0	0	50	1.00
2067834--2067930	3	31.7	3	71	22	69	60	2	2	35	1.20
2067868--2067930	22	2.9	21	79	15	67	63	0	0	36	0.95
2067871--2067938	31	2.2	32	82	12	88	63	0	0	36	0.95
2067858--2067935	35	2.1	35	82	15	88	65	0	0	34	0.93
2068052--2068120	35	2.0	35	91	0	111	49	10	8	31	1.67
2069086--2069128	24	1.9	22	81	13	52	67	2	25	4	1.22
2069842--2069883	12	3.6	12	90	3	59	54	9	7	28	1.59
2070228--2070255	14	2.0	14	100	0	56	14	0	28	57	1.38
2076464--2076622	45	3.6	45	87	2	223	39	6	22	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2079269--2079428	82	2.0	82	91	2	259	41	5	7	45	1.56
2082401--2082446	19	2.4	19	88	0	74	34	19	21	23	1.96
2082349--2082510	83	1.9	83	80	8	186	30	20	19	30	1.97
2089482--2089532	13	3.9	13	80	14	52	54	0	1	43	1.11
2089482--2089524	20	2.0	20	86	8	59	55	0	2	41	1.12
2089670--2089995	135	2.4	135	90	2	494	26	21	15	35	1.94
2090118--2090151	15	2.2	16	89	5	52	32	17	17	32	1.94
2090156--2090191	17	2.1	17	100	0	72	27	22	11	38	1.88
2090620--2090774	74	2.1	73	89	1	229	41	12	20	25	1.88
2090751--2090793	13	3.0	15	73	13	54	39	11	16	32	1.84
2090745--2090801	28	2.0	29	89	3	89	40	15	14	29	1.87
2090774--2091043	36	7.8	36	72	17	214	38	12	20	28	1.89
2090736--2090904	66	2.6	66	85	8	229	39	13	20	27	1.90
2090774--2091042	102	2.6	101	86	2	387	38	12	20	28	1.88
2090865--2090929	21	3.4	21	68	24	70	40	10	24	24	1.87
2090938--2091054	37	3.2	37	85	3	155	40	11	19	29	1.86
2091046--2091365	40	8.0	40	90	0	487	42	11	15	30	1.82
2100406--2100462	23	2.5	23	97	0	105	49	10	10	29	1.71
2102365--2102418	17	3.1	18	82	12	60	57	0	0	42	0.98
2102365--2102409	9	5.2	8	82	12	54	60	0	0	40	0.97
2104046--2104116	23	3.2	23	70	8	74	28	21	19	30	1.97
2104020--2104124	44	2.4	44	90	0	165	30	20	19	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2106084--2106147	25	2.4	27	82	15	80	18	0	21	59	1.38
2106425--2106457	12	2.6	13	85	9	50	42	9	6	42	1.61
2107869--2108214	171	2.0	174	98	1	671	39	9	15	34	1.81
2111203--2111243	21	2.0	21	100	0	82	68	4	4	21	1.28
2112174--2112235	18	3.3	17	77	20	61	35	3	1	59	1.23
2115090--2115196	7	15.6	7	69	18	57	51	4	1	42	1.33
2117502--2117551	25	2.0	25	96	0	91	24	38	16	22	1.93
2129040--2129887	200	4.2	198	75	8	659	35	19	18	26	1.95
2129533--2129558	12	2.2	12	100	0	52	61	0	7	30	1.24
2130531--2130582	16	3.3	15	78	7	59	36	1	0	61	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31