genome.fa.s851.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000851.1 Hibiscus syriacus cultivar Beakdansim tig00001644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7304151

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  15  of  31  ( 3618 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3596603--3596649	2	23.5	2	100	0	94	51	0	0	48	1.00
3598107--3598357	123	2.0	124	80	3	283	25	19	18	37	1.94
3598279--3598441	84	1.9	84	94	0	290	26	17	17	38	1.92
3598279--3598458	40	4.4	40	70	16	136	27	17	18	36	1.93
3598749--3598844	40	2.4	40	81	6	113	23	25	16	34	1.95
3598386--3598992	264	2.3	264	80	2	657	26	18	20	34	1.96
3599334--3599473	45	3.1	43	74	15	124	43	17	16	22	1.87
3602535--3602572	20	1.9	20	94	0	67	73	10	2	13	1.19
3603798--3603855	29	2.0	29	93	6	100	60	15	6	17	1.56
3606896--3606928	12	2.8	12	95	0	57	12	24	45	18	1.83
3610945--3611388	45	9.9	45	81	3	430	37	19	17	25	1.93
3614191--3614238	20	2.3	20	85	3	60	29	0	2	68	1.01
3622060--3622136	19	4.1	19	77	9	77	42	7	16	32	1.77
3628691--3628767	23	3.3	24	68	17	72	48	12	7	31	1.70
3631942--3631979	9	4.0	9	87	12	58	23	13	0	63	1.30
3631941--3631980	20	2.0	20	100	0	80	25	15	0	60	1.35
3639310--3639343	17	2.1	16	88	5	50	14	8	0	76	1.01
3645622--3645664	20	2.1	21	87	8	63	18	13	0	67	1.23
3645621--3645670	20	2.5	20	75	15	59	18	18	0	64	1.30
3649483--3649516	17	2.1	16	88	5	50	14	8	0	76	1.01
3653624--3653780	65	2.4	65	83	5	185	27	18	22	31	1.97
3659837--3660070	117	2.0	117	98	1	452	34	13	10	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3662070--3662227	65	2.4	65	82	5	169	27	20	21	31	1.98
3664962--3665026	23	2.9	23	72	20	57	50	10	7	30	1.65
3673743--3673772	13	2.2	14	94	5	53	80	0	6	13	0.91
3679706--3679748	20	2.2	20	100	0	86	30	23	11	34	1.90
3680766--3680827	31	2.0	31	87	0	88	35	12	22	29	1.91
3696860--3696938	31	2.5	31	91	0	122	18	10	17	53	1.72
3697573--3697612	20	2.0	20	90	9	64	35	10	15	40	1.80
3699868--3699942	31	2.4	31	90	0	123	52	14	12	21	1.74
3700516--3700590	30	2.5	31	84	8	100	21	16	12	50	1.76
3701864--3701892	13	2.1	14	93	6	51	75	6	0	17	1.01
3706019--3706056	16	2.4	16	86	4	51	34	21	7	36	1.82
3708450--3708484	18	1.9	18	94	0	61	8	45	17	28	1.77
3717896--3718071	2	90.5	2	65	23	74	50	3	3	43	1.36
3717896--3717971	34	2.1	37	83	11	97	50	5	2	42	1.39
3718026--3718112	9	9.7	9	79	14	56	52	2	2	42	1.26
3718013--3718117	16	7.2	15	82	10	80	52	1	3	41	1.30
3718161--3718193	2	17.0	2	93	6	59	48	0	0	51	1.00
3718170--3718362	42	4.6	44	74	18	162	43	3	8	45	1.49
3718178--3718267	37	2.4	37	90	3	137	43	2	8	45	1.47
3718251--3718275	2	12.5	2	100	0	50	52	0	0	48	1.00
3718261--3718676	36	11.3	37	73	12	238	46	4	6	42	1.49
3718168--3718363	83	2.4	83	86	6	256	43	3	8	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3718170--3718376	84	2.5	81	80	12	215	42	3	8	45	1.50
3718290--3718644	150	2.4	141	78	13	337	46	4	7	42	1.50
3718447--3718676	71	3.2	69	79	11	225	47	4	5	42	1.47
3718684--3718735	14	3.6	14	82	7	52	21	3	0	75	0.97
3719803--3719846	19	2.4	19	92	3	72	11	9	6	72	1.27
3719816--3719892	37	2.1	38	82	7	95	14	6	5	74	1.20
3719883--3719921	19	2.1	19	90	9	62	17	0	2	79	0.84
3720223--3720268	2	23.0	2	95	0	83	47	0	2	50	1.13
3720472--3720513	16	2.4	18	80	7	52	52	2	4	40	1.35
3720818--3720861	19	2.2	20	88	4	63	27	31	0	40	1.56
3722115--3722168	26	2.1	26	82	0	63	25	5	3	64	1.32
3722141--3722176	16	2.2	16	90	0	54	25	2	0	72	0.98
3722783--3722817	13	2.8	12	84	16	52	34	2	0	62	1.10
3723842--3723866	7	3.6	7	100	0	50	56	0	0	44	0.99
3723839--3723898	29	2.1	29	81	6	68	51	0	0	48	1.00
3725158--3725196	5	7.6	5	82	5	51	46	0	17	35	1.49
3732133--3732194	14	4.9	13	73	26	62	50	0	9	40	1.35
3732149--3732199	23	2.2	23	100	0	102	52	0	7	39	1.30
3736484--3736522	5	7.6	5	82	5	51	46	0	17	35	1.49
3738976--3739003	14	2.0	14	100	0	56	28	21	0	50	1.49
3740362--3740411	24	2.1	24	85	7	66	60	14	2	24	1.45
3748793--3748842	24	2.1	24	85	7	66	60	14	2	24	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3749017--3749065	25	2.0	25	84	4	64	12	40	18	28	1.86
3750783--3750835	27	2.0	27	92	0	88	47	3	7	41	1.50
3751245--3751282	20	1.9	20	88	0	58	23	21	26	28	1.99
3751358--3751452	42	2.3	42	83	0	118	41	13	16	28	1.87
3751378--3751472	20	4.7	20	83	5	109	38	12	18	29	1.88
3760118--3760159	15	2.7	16	77	7	50	54	19	11	14	1.70
3761191--3761270	14	6.3	14	78	21	104	52	26	13	7	1.67
3761184--3761255	10	6.4	10	75	22	63	54	25	12	8	1.65
3761184--3761269	24	3.6	24	98	0	163	53	25	12	8	1.66
3762891--3762941	26	1.9	27	84	4	68	27	25	1	45	1.64
3763181--3763241	25	2.4	25	89	10	90	45	3	9	40	1.53
3763181--3763249	24	2.8	25	84	4	77	49	2	8	39	1.49
3763464--3763505	16	2.7	16	85	3	59	38	11	21	28	1.89
3775923--3775970	19	2.5	20	86	3	62	29	22	14	33	1.94
3778182--3778222	21	1.9	22	90	5	66	29	12	19	39	1.88
3806261--3806294	11	3.2	11	87	4	52	23	26	23	26	2.00
3807792--3808023	60	3.9	59	81	4	286	25	18	19	35	1.95
3807792--3808023	119	1.9	120	83	4	299	25	18	19	35	1.95
3810342--3810391	20	2.4	21	86	6	75	22	28	24	26	1.99
3811936--3812168	60	3.9	60	87	2	299	24	18	19	36	1.95
3811936--3812168	119	2.0	120	87	0	342	24	18	19	36	1.95
3817888--3818073	93	2.0	92	85	5	250	17	20	16	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3819265--3819306	2	21.0	2	100	0	84	50	0	0	50	1.00
3822235--3822348	42	2.7	43	74	8	119	19	17	24	38	1.93
3823014--3823070	23	2.5	23	91	0	87	12	28	12	47	1.77
3824661--3824701	19	2.2	19	90	0	64	51	0	0	48	1.00
3824997--3825040	6	7.2	6	92	5	70	34	2	63	0	1.07
3829260--3829305	19	2.4	19	83	16	60	63	0	36	0	0.95
3829449--3829546	36	2.5	39	78	21	100	38	1	10	50	1.43
3829447--3829546	40	2.6	37	85	7	130	39	1	10	50	1.43
3829731--3829776	16	2.9	16	84	9	51	30	0	10	58	1.32
3831809--3831858	21	2.3	21	83	10	57	32	8	40	20	1.81
3832111--3832150	17	2.5	15	88	8	53	52	2	0	45	1.14
3832200--3832238	16	2.4	16	86	0	51	41	10	5	43	1.61
3832308--3832371	14	4.6	14	71	11	51	42	10	3	43	1.55
3832766--3832816	20	2.4	21	75	18	52	54	7	1	35	1.40
3833778--3834088	155	2.0	154	98	0	498	34	25	15	25	1.94
3835966--3836006	20	2.0	21	86	9	59	51	9	2	36	1.48
3836514--3836576	28	2.2	29	94	5	110	58	12	0	28	1.35
3836553--3836601	21	2.3	21	85	3	71	53	16	0	30	1.43
3836705--3836750	16	3.1	15	81	9	58	0	41	0	58	0.98
3838476--3838679	98	2.0	101	91	6	335	27	14	16	41	1.87
3841421--3841449	15	1.9	15	100	0	58	48	10	13	27	1.75
3842645--3842694	21	2.4	21	80	12	59	54	6	0	40	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3846732--3846764	2	16.5	2	100	0	66	51	0	0	48	1.00
3847186--3847250	30	2.2	30	82	0	85	44	10	10	33	1.74
3847717--3847750	17	2.0	17	94	0	59	61	0	0	38	0.96
3852215--3852255	17	2.4	19	80	19	54	56	2	0	41	1.13
3853576--3853670	3	32.0	3	74	6	77	61	1	1	36	1.10
3853939--3854054	58	2.0	58	93	0	196	31	20	13	34	1.92
3854004--3854496	124	4.0	124	92	3	773	25	18	15	40	1.89
3854007--3854610	246	2.5	246	83	10	776	26	17	14	40	1.89
3854407--3854628	113	2.0	113	90	1	356	28	17	13	40	1.88
3855768--3855802	18	1.9	18	100	0	70	57	5	5	31	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31