Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000851.1 Hibiscus syriacus cultivar Beakdansim tig00001644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7304151

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  31  of  31  ( 3618 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7239001--7239045
22
2.0
23
91
4
74
60
24
6
8
1.51
7239123--7239190
23
3.0
23
80
4
84
42
16
14
26
1.86
7239190--7239301
30
3.7
30
76
13
122
58
20
5
15
1.56
7252087--7252142
25
2.2
26
93
3
96
58
1
1
37
1.19
7253180--7253217
20
1.9
20
89
10
60
31
15
7
44
1.75
7268960--7269007
25
2.0
24
87
4
69
54
16
4
25
1.60
7271035--7271233
55
3.6
54
81
4
143
24
24
20
31
1.98
7271119--7271711
55
10.9
53
86
7
515
25
25
18
31
1.97
7271118--7271703
165
3.6
164
84
7
603
24
25
18
31
1.97
7271334--7271712
55
6.9
55
93
3
586
26
25
16
31
1.96
7283771--7283818
25
2.0
24
87
4
69
54
16
4
25
1.60
7286776--7286837
31
2.0
31
90
0
97
27
25
9
37
1.87
7287440--7287474
18
1.9
18
94
0
61
37
0
2
60
1.12
7288509--7288534
3
8.7
3
100
0
52
30
0
0
69
0.89
7288853--7288900
23
2.2
22
92
7
80
41
0
10
47
1.37
7294635--7294684
25
2.0
25
100
0
100
32
24
8
36
1.84
7300784--7300812
3
9.7
3
100
0
58
0
31
0
68
0.89
7301765--7301794
16
1.9
15
93
6
51
46
13
26
13
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31

The End!