genome.fa.s851.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000851.1 Hibiscus syriacus cultivar Beakdansim tig00001644_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7304151

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  30  of  31  ( 3618 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7038402--7038742	41	8.2	42	95	1	600	31	26	21	21	1.98
7045961--7046000	2	20.0	2	100	0	80	50	0	0	50	1.00
7049565--7049625	24	2.6	23	75	14	61	31	3	16	49	1.62
7049568--7049629	25	2.6	23	73	12	54	30	3	16	50	1.61
7051118--7051156	20	1.9	21	89	5	62	30	15	17	35	1.91
7055405--7055536	29	4.4	30	94	1	178	31	27	21	19	1.97
7055405--7055536	59	2.2	60	86	4	178	31	27	21	19	1.97
7055491--7055584	30	3.1	31	83	4	93	34	21	21	23	1.97
7056063--7056091	2	15.0	2	92	7	51	48	0	0	51	1.00
7056636--7056680	21	2.1	21	87	0	63	15	24	28	31	1.96
7059879--7059981	30	3.4	30	91	2	145	31	26	21	21	1.98
7059882--7060004	30	4.1	30	88	2	140	31	26	21	20	1.98
7059963--7060031	31	2.2	31	84	5	86	34	20	21	23	1.96
7061081--7061125	21	2.1	21	87	0	63	15	24	28	31	1.96
7062607--7062638	11	2.9	11	95	0	55	43	9	9	37	1.69
7063983--7064108	63	2.0	63	100	0	252	36	19	14	30	1.91
7065817--7065875	24	2.5	24	94	0	100	18	32	16	32	1.94
7067272--7067362	17	5.6	17	70	15	66	59	0	0	40	0.97
7067289--7067341	20	2.9	17	76	17	52	60	0	0	39	0.97
7067306--7067330	12	2.1	12	100	0	50	56	0	0	44	0.99
7067268--7067362	47	2.0	47	97	2	183	60	0	0	40	0.97
7068247--7068377	24	5.9	24	68	18	95	37	0	5	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7068271--7068312	17	2.3	18	84	16	59	38	0	0	61	0.96
7068246--7068377	44	3.1	41	75	14	124	37	0	5	56	1.28
7068331--7068390	24	2.3	28	72	22	74	31	0	11	56	1.35
7068339--7068389	24	2.1	24	92	0	84	33	0	11	54	1.37
7074450--7074967	254	2.0	263	94	4	930	27	17	16	37	1.92
7078431--7078566	21	6.6	21	86	7	138	31	22	22	22	1.98
7078493--7078580	20	4.3	20	83	8	124	36	18	21	23	1.95
7078661--7078688	6	4.7	6	100	0	56	32	50	17	0	1.47
7079168--7079211	20	2.1	22	91	8	74	0	18	43	38	1.50
7079322--7079497	21	8.6	20	78	10	135	23	22	22	31	1.99
7079342--7079483	41	3.5	41	83	10	184	23	22	20	33	1.97
7079364--7079456	20	4.6	20	84	7	134	23	22	18	35	1.96
7085602--7085677	36	2.1	36	85	7	100	47	1	3	47	1.29
7085823--7085860	20	1.9	20	88	0	58	21	26	10	42	1.85
7085849--7085894	23	2.0	23	100	0	92	34	30	8	26	1.86
7086234--7086258	4	6.2	4	100	0	50	0	24	0	76	0.80
7088464--7088508	23	2.0	23	86	0	63	24	26	24	24	2.00
7088476--7088752	150	1.9	149	94	2	493	34	21	16	27	1.95
7096979--7097286	150	2.1	149	95	0	553	34	21	16	26	1.95
7101131--7101161	13	2.4	13	100	0	62	41	0	0	58	0.98
7102054--7102103	25	2.0	26	88	4	75	40	10	12	38	1.76
7117693--7117732	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7122466--7122540	10	7.8	9	75	11	60	18	24	26	30	1.98
7122466--7122540	19	3.8	20	83	11	75	18	24	26	30	1.98
7122466--7122514	10	4.9	10	85	7	64	20	24	22	32	1.98
7122467--7122546	9	8.3	9	78	10	52	18	25	26	30	1.98
7122543--7122602	17	3.0	21	76	23	74	18	46	23	11	1.81
7122542--7122590	17	2.9	17	96	0	89	18	46	22	12	1.82
7122592--7122629	7	5.4	7	96	0	67	18	28	26	26	1.98
7129783--7129841	20	2.9	21	85	7	86	18	27	23	30	1.98
7129804--7129873	10	7.3	10	69	24	53	15	28	28	27	1.96
7129784--7129848	30	2.2	29	86	13	89	16	27	26	29	1.97
7129804--7129871	19	3.5	20	86	9	81	16	26	29	27	1.97
7129870--7129929	17	3.0	21	76	23	74	20	48	21	10	1.78
7129869--7129917	17	2.9	17	96	0	89	20	48	20	10	1.78
7129919--7129949	7	4.4	7	95	0	53	19	29	25	25	1.99
7133105--7133152	18	2.7	18	87	3	71	0	41	8	50	1.33
7135162--7135244	26	3.2	26	94	0	148	13	22	24	39	1.90
7135551--7135590	21	1.9	21	94	0	71	32	30	15	22	1.94
7135616--7135654	19	2.1	19	95	0	69	20	38	15	25	1.92
7135551--7135780	64	3.5	64	80	11	206	30	26	16	26	1.97
7135732--7135780	19	2.6	19	84	9	57	24	30	18	26	1.98
7141569--7141646	24	3.5	22	77	15	88	21	25	24	28	1.99
7144162--7144201	21	1.9	21	94	0	71	32	30	15	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7144227--7144265	19	2.1	19	95	0	69	20	38	15	25	1.92
7144162--7144392	64	3.6	64	78	11	190	29	26	16	27	1.97
7144359--7144429	19	3.7	19	98	0	133	21	30	21	26	1.98
7145486--7145525	21	1.9	21	85	10	55	32	12	2	52	1.52
7146240--7146308	29	2.3	29	85	5	93	31	11	4	52	1.57
7146261--7146352	29	3.3	29	77	11	84	42	6	1	50	1.35
7146294--7146346	26	2.0	26	88	0	79	41	3	0	54	1.18
7146287--7146348	26	2.3	27	77	11	72	46	3	0	50	1.17
7146375--7146651	30	9.4	30	75	11	159	51	1	8	38	1.39
7146379--7146500	54	2.2	54	80	11	140	51	0	9	37	1.41
7146409--7146628	60	3.8	60	77	12	192	54	0	8	36	1.38
7146526--7146575	25	2.0	26	84	11	68	54	0	8	38	1.30
7146409--7146651	90	2.8	89	75	12	234	52	1	8	37	1.40
7147020--7147088	36	1.9	35	88	2	102	42	5	20	31	1.76
7147053--7147098	15	3.1	15	75	6	58	41	6	19	32	1.77
7147081--7147130	20	2.5	20	100	0	100	40	10	16	34	1.81
7147119--7147161	14	3.1	14	82	0	50	34	13	18	32	1.90
7147277--7147375	49	2.0	50	80	9	114	47	2	0	50	1.12
7147354--7147422	32	2.3	30	82	12	79	44	0	2	52	1.16
7147464--7147514	23	2.2	23	82	0	57	45	1	1	50	1.24
7161106--7161633	145	3.6	144	75	8	462	34	21	22	21	1.97
7161847--7161914	30	2.3	29	82	2	73	20	11	10	57	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7166215--7166302	32	2.8	32	87	3	115	29	18	21	30	1.97
7166809--7166919	43	2.6	43	89	4	170	28	34	18	18	1.95
7166812--7166936	43	2.9	43	88	4	164	28	32	20	18	1.96
7167273--7167497	121	1.9	121	85	1	317	32	24	18	24	1.97
7167550--7167647	40	2.5	40	84	3	117	22	28	18	30	1.97
7168422--7168686	145	1.8	145	90	1	433	32	22	23	21	1.98
7168424--7168775	145	2.4	143	79	9	365	34	19	23	21	1.96
7172755--7172938	51	3.6	51	90	5	291	46	17	13	22	1.82
7174714--7174755	3	14.0	3	100	0	84	33	0	0	66	0.92
7180293--7180446	60	2.6	60	80	9	156	33	22	6	38	1.80
7182674--7182734	27	2.3	26	83	16	72	44	1	1	52	1.20
7182717--7182766	23	2.2	23	92	0	82	46	0	0	54	1.00
7182702--7182817	52	2.2	52	82	14	132	43	1	0	53	1.16
7183072--7183124	23	2.3	23	80	0	61	9	22	16	50	1.74
7183676--7183741	24	2.7	25	80	19	77	48	1	0	50	1.10
7183682--7183770	28	3.1	29	73	15	78	46	2	0	51	1.13
7187497--7188611	154	7.3	155	81	8	1172	22	25	19	32	1.98
7187497--7188614	52	21.9	53	77	11	1088	22	25	19	32	1.97
7188975--7189197	36	6.4	35	84	6	249	20	18	25	35	1.95
7188975--7189200	105	2.2	106	84	6	291	20	18	25	35	1.95
7198050--7198085	3	12.7	3	88	11	58	66	0	0	33	0.92
7198860--7198887	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7203746--7203800	24	2.2	25	78	12	60	40	9	0	50	1.34
7214696--7214743	24	2.0	24	84	8	62	2	37	25	35	1.68
7221410--7221446	17	2.1	19	90	10	60	35	2	5	56	1.36
7223480--7223535	29	1.9	29	92	0	94	42	8	14	33	1.77
7228161--7228188	2	14.0	2	100	0	56	0	50	0	50	1.00
7228374--7228418	15	2.9	15	81	15	56	53	0	0	46	1.00
7228374--7228411	16	2.4	16	87	12	53	52	0	0	47	1.00
7228422--7228471	22	2.3	22	83	13	68	62	2	8	28	1.35
7231333--7231429	31	3.1	31	84	12	119	59	6	8	25	1.49
7234819--7234849	15	2.1	15	100	0	62	32	12	29	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31