genome.fa.s8702.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008702.1 Hibiscus syriacus cultivar Beakdansim tig00111741_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3201804

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3079576--3079788	7	28.8	8	68	22	103	38	11	0	49	1.45
3079578--3079644	13	4.8	13	72	15	53	35	8	1	53	1.41
3079191--3079385	22	8.7	22	73	16	138	37	8	2	52	1.43
3079513--3079802	137	2.1	135	85	8	383	38	10	1	48	1.48
3079599--3079815	117	1.9	116	82	7	273	38	11	1	48	1.47
3079835--3079914	37	2.2	36	79	18	87	36	8	1	53	1.40
3079894--3079972	40	1.9	42	84	5	108	43	6	1	49	1.36
3079947--3080104	2	77.5	2	70	17	94	46	2	4	46	1.36
3080025--3080119	37	2.5	39	84	6	133	37	6	3	52	1.43
3080185--3080285	2	52.0	2	68	20	54	38	3	1	55	1.30
3080187--3080282	8	12.0	8	73	14	65	37	4	2	56	1.30
3080160--3080281	42	3.0	40	77	13	131	38	3	4	54	1.36
3080189--3080255	14	4.8	14	72	26	61	35	5	1	56	1.33
3080267--3081577	561	2.4	545	86	5	1760	33	12	6	47	1.68
3082435--3082490	20	2.8	20	89	10	80	57	10	5	26	1.54
3083009--3083324	29	11.2	29	77	10	181	31	4	13	49	1.62
3083091--3083324	29	8.3	28	82	8	226	33	4	12	50	1.60
3093465--3093617	16	9.7	16	70	15	97	58	3	1	35	1.28
3093465--3093617	3	47.7	3	72	17	85	58	3	1	35	1.28
3093596--3093633	13	2.9	13	88	0	58	60	13	0	26	1.33
3099006--3099104	40	2.5	40	98	0	189	45	4	9	41	1.55
3099151--3099213	32	2.0	32	84	6	83	28	7	7	55	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3103969--3103998	15	1.9	16	93	6	53	13	0	30	56	1.37
3106464--3106572	24	4.5	24	76	6	89	51	15	12	20	1.76
3108817--3108846	13	2.3	13	94	0	51	40	20	20	20	1.92
3112570--3112594	2	12.5	2	100	0	50	48	0	0	52	1.00
3118273--3118298	12	2.2	12	100	0	52	15	23	30	30	1.95
3125763--3125792	12	2.5	12	94	0	51	56	0	3	40	1.16
3127372--3127397	13	2.0	13	100	0	52	76	7	0	15	0.99
3127446--3127546	31	3.2	31	83	10	125	47	3	2	45	1.36
3127427--3127696	104	2.6	104	81	9	277	44	5	4	45	1.46
3127486--3127696	105	2.0	104	83	7	264	43	4	5	46	1.45
3127508--3127697	34	5.2	37	76	13	164	44	4	5	46	1.45
3128542--3128624	29	2.8	29	85	10	105	37	7	18	37	1.78
3128542--3128613	30	2.4	31	81	9	94	31	6	18	43	1.76
3128620--3128804	36	5.1	36	86	4	255	36	12	23	26	1.91
3128620--3128804	72	2.5	73	90	4	284	36	12	23	26	1.91
3128776--3128861	21	4.4	21	73	16	94	38	11	24	25	1.89
3128740--3128861	57	2.1	57	92	0	208	39	12	23	24	1.89
3128704--3128894	93	2.1	93	93	2	330	38	13	22	26	1.90
3128797--3128900	36	2.9	35	89	2	145	41	13	20	25	1.88
3128999--3129542	84	6.5	84	85	3	695	25	20	24	29	1.99
3128904--3129539	249	2.6	250	87	3	840	24	20	24	29	1.99
3130720--3130906	95	2.0	95	89	2	286	31	17	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3134246--3134275	12	2.5	12	94	0	51	56	0	3	40	1.16
3135855--3135880	13	2.0	13	100	0	52	76	7	0	15	0.99
3135929--3136029	31	3.2	31	80	10	116	47	3	3	44	1.40
3136002--3136183	36	5.0	36	78	11	183	43	4	5	46	1.46
3135986--3136195	72	2.9	72	80	12	218	44	4	5	45	1.47
3139415--3139483	31	2.2	31	81	0	84	46	13	5	34	1.67
3140636--3140676	2	20.5	2	100	0	82	48	0	0	51	1.00
3140812--3140977	36	4.3	39	80	13	175	50	0	9	40	1.39
3140951--3140983	14	2.2	16	89	10	52	54	3	9	33	1.47
3140812--3141037	36	5.8	38	76	14	151	50	0	8	40	1.39
3141090--3141162	3	24.3	3	100	0	146	32	0	0	67	0.91
3154082--3154288	75	2.7	76	87	2	283	25	32	23	19	1.97
3160063--3160144	21	3.9	21	79	7	76	24	36	23	15	1.94
3162373--3162399	13	2.1	13	100	0	54	37	0	40	22	1.54
3162701--3162909	76	2.8	77	86	2	280	24	32	22	20	1.98
3165511--3165535	2	12.5	2	100	0	50	52	0	0	48	1.00
3167351--3167446	43	2.3	43	83	7	117	51	2	3	43	1.29
3167429--3167466	18	2.2	18	90	4	60	42	0	2	55	1.14
3169993--3170417	122	3.5	122	97	0	798	39	14	15	31	1.87
3172555--3172584	15	2.0	15	100	0	60	26	26	26	20	1.99
3179922--3179978	4	14.2	4	82	17	50	26	0	0	73	0.83
3180305--3180377	10	7.6	9	75	13	56	15	5	1	78	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3180319--3180377	20	3.1	18	77	17	66	16	3	1	77	0.98
3182539--3182601	11	5.9	11	69	14	51	55	3	1	39	1.25
3182673--3182712	15	2.7	15	88	7	55	42	5	0	52	1.23
3184804--3184876	11	6.5	11	74	12	67	26	13	24	35	1.93
3184807--3184879	22	3.2	21	81	13	74	26	12	24	36	1.91
3185900--3185960	3	21.0	3	83	12	83	31	1	0	67	1.01
3186038--3186186	25	5.9	25	98	1	280	32	20	15	31	1.93
3186038--3186186	51	2.9	50	96	3	280	32	20	15	31	1.93
3187609--3187693	30	2.8	31	72	10	86	20	15	4	60	1.53
3200807--3201020	90	2.4	87	85	7	275	28	29	17	24	1.97
3200817--3200960	46	3.3	43	72	12	141	27	28	19	24	1.98
3201214--3201269	3	19.0	3	82	10	71	30	1	0	67	1.01
3201214--3201269	11	5.6	10	82	14	71	30	1	0	67	1.01
3201346--3201462	49	2.4	51	90	9	183	32	20	15	31	1.94
3201346--3201464	25	4.9	25	90	10	185	31	21	15	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!