genome.fa.s8702.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008702.1 Hibiscus syriacus cultivar Beakdansim tig00111741_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3201804

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274816--274852	13	2.8	13	87	4	56	59	0	0	40	0.97
274872--274905	18	1.9	17	94	5	59	67	0	0	32	0.91
275808--275853	16	2.8	17	90	6	69	0	39	17	43	1.49
275810--275859	16	3.1	16	85	5	66	0	34	20	46	1.51
276364--276449	3	27.7	3	80	4	73	58	1	0	40	1.06
276364--276448	26	3.4	25	85	4	100	57	1	0	41	1.06
280408--280446	6	6.5	6	93	0	60	33	2	53	10	1.48
282974--283008	16	2.2	16	94	0	61	31	22	14	31	1.94
282980--283020	16	2.6	16	88	3	57	29	21	12	36	1.90
283045--283082	19	2.0	19	94	0	67	36	5	13	44	1.66
284268--284306	20	2.0	19	90	5	60	56	0	12	30	1.37
286157--286198	23	1.9	23	90	9	70	21	14	0	64	1.29
286590--286653	32	2.0	32	96	0	119	34	12	29	23	1.92
289050--289089	21	1.9	21	94	0	71	27	22	22	27	1.99
289643--289757	61	1.9	61	88	0	176	28	26	19	25	1.98
292999--293111	60	1.9	60	86	0	163	28	13	20	38	1.90
293000--293124	60	2.1	60	83	0	151	28	14	18	38	1.90
298246--298291	3	15.3	3	100	0	92	34	0	0	65	0.93
298386--298428	3	14.3	3	100	0	86	34	0	0	65	0.93
298218--298495	137	2.0	138	97	2	522	40	7	6	45	1.58
298490--298522	15	2.2	16	89	10	52	51	6	0	42	1.26
298494--298525	15	2.1	15	100	0	64	53	6	0	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299895--299937	14	3.1	14	83	3	52	62	18	6	11	1.50
300136--300204	14	5.2	14	79	13	92	56	14	13	15	1.67
300106--300207	24	4.2	24	81	5	116	57	15	10	15	1.64
305730--305827	2	49.5	2	91	2	162	0	48	1	50	1.07
308962--309056	27	3.6	27	94	2	167	29	12	15	42	1.84
312773--312867	27	3.6	27	94	2	167	29	12	15	42	1.84
313055--314003	449	2.1	450	93	2	1647	25	20	15	38	1.92
314944--314979	17	2.1	17	100	0	72	11	16	0	72	1.12
318759--318997	121	2.0	122	94	0	417	30	26	15	27	1.96
328901--328943	17	2.5	17	84	3	59	51	0	0	48	1.00
330010--330050	21	2.0	21	95	0	73	41	4	17	36	1.71
330366--330441	39	1.9	39	86	5	109	39	14	18	27	1.90
330471--330508	14	2.7	14	95	0	67	13	13	15	57	1.65
335316--335390	36	2.1	36	97	0	141	44	13	16	26	1.84
335679--335896	20	10.6	20	64	6	96	27	20	21	31	1.98
335686--335814	61	2.1	62	94	1	224	26	19	22	31	1.98
335749--335916	41	4.1	41	89	0	246	30	19	21	29	1.97
335803--335916	21	5.5	21	70	6	90	30	20	21	28	1.98
340172--340243	36	2.0	37	94	2	128	13	11	36	38	1.81
339921--340512	298	2.0	295	94	3	1053	25	13	23	38	1.91
343407--343431	12	2.1	12	100	0	50	40	8	8	44	1.63
346211--346285	36	2.1	36	97	0	141	44	13	16	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346575--346791	20	10.6	20	64	7	96	26	20	21	31	1.98
346582--346710	61	2.1	62	94	1	224	26	19	22	31	1.98
346645--346811	41	4.1	41	88	4	239	29	19	21	29	1.97
346604--346730	61	2.1	61	82	5	150	29	19	22	27	1.98
346645--346811	81	2.0	81	88	3	246	29	19	21	29	1.97
346699--346811	20	5.5	21	69	7	81	30	20	21	28	1.98
351070--351141	36	2.0	37	94	2	128	13	11	36	38	1.81
350819--351409	298	2.0	293	94	4	1040	25	13	23	38	1.91
358392--358456	36	1.9	33	82	14	80	27	29	21	21	1.99
365846--365888	17	2.5	17	84	3	59	51	0	0	48	1.00
372286--372368	29	2.8	29	92	1	139	43	9	14	32	1.78
377050--377132	29	2.8	29	92	1	139	43	9	14	32	1.78
377468--377523	17	3.3	18	76	16	57	71	16	10	1	1.22
377671--377700	2	15.0	2	92	0	51	46	0	53	0	1.00
382045--382087	23	1.9	23	86	13	63	20	16	0	62	1.32
382553--382587	16	2.2	16	100	0	70	34	5	20	40	1.76
388792--388832	3	13.0	3	89	5	55	36	0	2	60	1.10
388911--388944	12	2.8	12	90	0	50	17	11	2	67	1.34
390444--390564	30	4.1	30	72	9	104	58	11	9	20	1.60
390720--391446	283	2.5	284	84	5	939	22	25	21	30	1.98
390721--391531	145	5.6	144	76	5	719	22	24	21	31	1.98
390744--391526	428	1.8	429	81	2	964	22	24	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391867--391924	3	18.7	3	85	7	80	60	0	1	37	1.07
392093--392276	40	4.3	41	72	17	126	27	18	30	23	1.98
392333--392478	35	4.1	36	83	3	188	41	13	17	27	1.88
392333--392478	71	2.0	72	86	3	206	41	13	17	27	1.88
392790--393010	120	1.8	120	83	5	295	21	19	26	33	1.97
393453--393539	32	2.7	32	83	0	102	31	22	12	33	1.92
397725--397846	30	4.1	30	73	7	113	58	10	10	20	1.61
398207--398811	145	4.2	144	76	6	544	22	22	20	34	1.97
398062--398701	285	2.2	285	86	3	888	23	22	20	32	1.98
398005--398829	145	5.7	143	72	8	535	21	23	21	33	1.97
399140--399194	3	17.7	3	81	7	65	58	0	3	38	1.16
400668--400791	60	2.1	60	83	6	153	30	16	5	47	1.69
401607--401664	3	19.3	3	100	0	116	34	0	0	65	0.93
402167--402287	30	4.1	30	75	5	120	57	11	10	20	1.64
402231--402301	30	2.4	29	81	11	83	61	11	7	19	1.51
402456--402952	145	3.4	144	79	1	528	21	24	20	32	1.98
403293--403357	3	21.0	3	87	6	94	61	0	1	36	1.05
405814--405853	3	13.3	3	100	0	80	35	0	0	65	0.93
406257--406296	20	2.0	20	85	9	55	32	7	5	55	1.50
407377--407406	10	3.0	10	90	0	51	56	20	13	10	1.65
407390--407435	24	1.9	24	81	0	56	52	15	19	13	1.75
407596--407651	24	2.3	24	81	0	67	53	16	14	16	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410210--410333	31	4.0	32	72	12	80	27	29	26	16	1.97
410210--410333	63	2.0	63	82	9	155	27	29	26	16	1.97
411211--411346	61	2.3	59	81	7	177	35	20	5	38	1.77
411209--411345	29	4.6	30	79	6	136	35	20	5	37	1.77
411350--411374	13	1.9	13	100	0	50	12	24	48	16	1.79
418559--418747	29	6.6	29	80	2	193	34	21	7	36	1.81
418568--418748	58	3.2	56	87	6	256	34	21	7	36	1.82
418559--418724	85	1.9	86	84	4	219	34	21	6	37	1.79
420833--420883	15	3.5	14	78	21	52	68	0	5	25	1.12
422326--422810	76	6.4	76	97	0	900	35	23	19	22	1.96
422751--423116	187	2.0	185	95	1	660	37	14	15	31	1.88
422998--423325	166	2.0	167	92	3	543	37	12	14	34	1.85
423832--423930	22	4.5	22	93	2	155	40	14	12	33	1.82
431473--431511	14	2.8	14	85	11	53	58	7	17	15	1.59
434245--434495	137	1.8	137	82	5	328	45	8	9	36	1.67
434666--434725	15	4.1	14	78	19	61	68	0	5	26	1.10
435422--435530	3	36.0	3	88	5	112	57	0	0	42	0.98
446908--446940	2	16.5	2	93	0	57	0	51	0	48	1.00
448459--448483	11	2.3	11	100	0	50	12	16	44	28	1.83
448578--448637	22	2.7	22	92	2	93	30	3	10	56	1.48
449016--449101	30	2.9	30	80	3	93	19	11	10	58	1.62
449714--450234	257	2.0	257	95	0	925	25	19	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450604--450734	49	2.7	48	88	2	183	28	9	29	32	1.89
452152--452222	2	35.5	2	100	0	142	49	0	0	50	1.00
458661--458705	23	1.9	24	90	4	74	55	17	15	11	1.68
458612--458711	24	4.2	24	70	12	80	57	15	15	13	1.67
458880--458945	34	1.9	34	87	0	96	57	18	12	12	1.64
458908--459001	24	4.0	24	75	5	93	48	15	15	19	1.81
462626--462746	30	4.1	30	75	5	120	57	11	10	20	1.64
462690--462760	30	2.4	29	81	11	83	61	11	7	19	1.51
462917--463417	145	3.4	143	77	4	511	22	24	20	32	1.98
463755--463815	3	19.7	3	86	6	86	60	0	1	37	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14