genome.fa.s8702.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008702.1 Hibiscus syriacus cultivar Beakdansim tig00111741_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3201804

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  9  of  14  ( 1641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1846298--1846341	21	2.1	21	86	0	61	9	36	15	38	1.80
1847120--1847159	20	2.0	21	85	14	57	42	5	7	45	1.54
1847332--1847533	65	3.1	64	80	4	219	31	23	16	28	1.96
1847372--1847535	65	2.5	65	85	1	222	30	25	15	28	1.96
1849902--1849948	19	2.5	19	93	6	78	57	10	12	19	1.64
1853321--1853362	16	2.6	16	96	0	75	14	26	23	35	1.93
1860093--1860122	13	2.2	14	94	5	53	16	0	6	76	0.99
1862921--1862970	22	2.3	22	96	0	91	38	24	16	22	1.93
1871871--1871900	15	2.0	15	93	0	51	26	36	3	33	1.73
1877735--1877786	22	2.4	22	83	6	61	28	13	19	38	1.89
1878323--1878364	16	2.6	16	100	0	84	42	7	19	30	1.78
1888792--1888834	10	4.4	10	82	2	52	69	0	9	20	1.15
1888852--1888897	11	4.4	11	86	10	69	73	6	2	17	1.14
1888856--1888897	20	2.0	21	90	4	68	73	7	2	16	1.15
1900001--1900043	20	2.2	20	86	0	59	34	23	11	30	1.90
1902030--1902096	30	2.3	29	85	14	86	68	4	17	8	1.33
1902039--1902095	29	1.9	30	86	10	82	68	5	17	8	1.35
1904210--1904269	20	2.8	20	68	20	50	30	6	23	40	1.80
1906415--1906457	20	2.2	20	91	0	68	34	20	11	32	1.89
1906678--1906747	27	2.6	27	88	0	113	44	21	5	28	1.75
1907747--1907824	39	2.0	39	89	0	120	19	20	23	37	1.95
1907750--1907840	39	2.3	38	85	5	119	20	20	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1907836--1907926	40	2.3	40	83	5	114	25	23	18	32	1.97
1909033--1909127	37	2.5	37	86	8	131	43	23	6	27	1.78
1910023--1910050	2	14.0	2	100	0	56	50	0	0	50	1.00
1911719--1911759	18	2.3	18	95	0	73	19	48	21	9	1.77
1911741--1911795	8	7.5	8	76	19	66	14	36	25	23	1.93
1911692--1911767	13	5.5	13	79	14	80	17	46	21	15	1.84
1911706--1911767	31	2.0	31	93	0	106	17	46	20	14	1.83
1911757--1911796	7	5.4	7	85	8	53	12	32	27	27	1.93
1911757--1911795	15	2.6	15	91	0	69	12	33	25	28	1.93
1913084--1913119	18	2.0	18	88	0	54	52	0	16	30	1.44
1914271--1914344	23	3.2	23	83	9	96	24	17	21	36	1.95
1914277--1914351	24	3.2	24	88	1	116	25	17	21	36	1.95
1915683--1915793	45	2.5	45	88	2	161	28	14	18	37	1.91
1920706--1920752	2	25.0	2	80	20	57	46	2	0	51	1.13
1921885--1921928	19	2.3	18	82	17	54	22	4	6	65	1.35
1922072--1922116	19	2.4	18	82	10	54	20	2	2	75	1.01
1922072--1922135	9	6.7	9	75	18	58	18	3	4	73	1.14
1922086--1922136	24	2.2	23	86	10	68	21	1	5	70	1.18
1922098--1922143	24	1.9	24	86	0	65	21	4	6	67	1.32
1925524--1925566	23	1.9	21	86	13	59	16	6	4	72	1.24
1932672--1932696	11	2.3	11	100	0	50	92	8	0	0	0.40
1932655--1932688	9	3.9	9	84	7	52	88	8	2	0	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1932654--1932696	17	2.5	17	85	7	61	88	9	2	0	0.60
1932654--1932696	20	2.2	20	87	4	61	88	9	2	0	0.60
1933509--1934402	105	8.5	105	93	0	1448	33	24	18	23	1.96
1934878--1934938	2	32.0	2	84	15	85	47	1	0	50	1.10
1936220--1936250	2	15.5	2	93	0	53	51	0	0	48	1.00
1936298--1936331	10	3.5	10	84	8	52	20	0	0	79	0.73
1936299--1936349	19	2.7	20	79	14	54	17	1	3	76	1.03
1939501--1939525	13	1.9	13	100	0	50	20	40	16	24	1.91
1945074--1945109	17	2.0	19	89	10	58	50	2	13	33	1.57
1946737--1946833	24	4.0	24	74	5	97	21	14	16	47	1.82
1947007--1947053	2	23.5	2	100	0	94	48	0	0	51	1.00
1952061--1952085	13	1.9	13	100	0	50	16	24	24	36	1.94
1960564--1960619	27	2.1	27	83	6	69	48	21	0	30	1.51
1961068--1961142	21	3.5	21	76	18	59	28	26	16	29	1.96
1962689--1962733	21	2.1	21	100	0	90	31	15	8	44	1.77
1964102--1964163	21	3.0	21	74	9	63	33	22	14	29	1.94
1967218--1967316	44	2.3	45	84	7	132	35	18	16	30	1.92
1967238--1967314	24	3.4	24	68	14	63	36	15	16	31	1.91
1968513--1968596	32	2.7	30	75	17	89	28	29	28	13	1.94
1968927--1968967	13	3.2	13	85	0	55	46	7	7	39	1.60
1974051--1974082	2	16.0	2	100	0	64	50	0	0	50	1.00
1975270--1975350	23	3.6	22	76	8	83	25	20	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1979158--1979210	21	2.5	20	82	11	54	35	7	1	54	1.40
1979158--1979197	21	1.9	21	85	10	55	35	7	2	55	1.42
1981140--1981242	45	2.3	45	88	6	147	31	18	22	28	1.97
1982742--1982842	35	2.9	35	81	0	130	22	31	18	26	1.97
1982953--1982992	20	1.9	21	85	10	55	37	37	10	15	1.80
1983206--1983276	34	2.1	33	87	7	99	36	12	26	23	1.91
1986166--1986262	20	5.4	18	70	22	62	19	30	19	29	1.97
1986185--1986242	15	3.5	15	72	20	53	18	32	18	29	1.96
1986166--1986305	35	4.0	35	88	0	199	20	31	18	29	1.97
1986220--1986249	15	2.0	15	93	0	51	26	30	16	26	1.97
1986166--1986305	70	2.0	70	91	2	228	20	31	18	29	1.97
1986198--1986304	20	5.8	20	61	24	56	21	32	17	28	1.96
1987067--1987114	16	2.9	16	90	3	78	31	25	18	25	1.98
1993058--1993110	21	2.5	21	96	0	97	35	16	22	24	1.95
1993117--1993173	20	2.6	21	81	13	62	35	19	22	22	1.96
1993138--1993175	20	1.9	20	100	0	76	36	18	21	23	1.95
1993628--1993697	33	2.1	33	86	5	97	32	15	28	22	1.95
1995255--1995457	89	2.3	89	92	0	336	31	23	6	38	1.80
1995255--1995457	44	4.6	44	92	1	325	31	23	6	38	1.80
2005131--2005220	45	2.0	46	93	2	155	26	18	26	27	1.98
2006263--2006294	15	2.1	15	94	0	55	37	15	28	18	1.92
2012804--2012893	45	2.0	45	86	4	128	26	20	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2015361--2015427	33	2.0	33	91	0	107	32	16	29	20	1.95
2016665--2016776	21	5.4	21	70	17	92	37	22	19	20	1.94
2016661--2016797	42	3.3	42	93	2	233	35	24	19	19	1.95
2016728--2016860	61	2.1	62	89	5	162	34	27	18	20	1.95
2016686--2016904	21	10.6	21	71	11	148	36	25	18	20	1.95
2016686--2016904	103	2.1	103	94	0	384	36	25	18	20	1.95
2016789--2016900	42	2.7	42	87	8	167	36	25	16	21	1.94
2016913--2016965	21	2.5	21	93	0	97	16	18	33	30	1.94
2022937--2022997	28	2.2	28	82	5	70	52	18	11	18	1.74
2028107--2028157	18	2.8	18	78	0	66	27	50	11	9	1.70
2028181--2028214	15	2.1	16	89	10	52	11	35	29	23	1.90
2033085--2033208	22	5.8	21	83	10	137	26	25	17	29	1.98
2033085--2033208	44	2.9	43	84	8	155	26	25	17	29	1.98
2035559--2035588	14	2.1	14	100	0	60	23	0	43	33	1.54
2036744--2036858	35	3.3	34	74	13	108	29	20	13	36	1.91
2043423--2043462	21	1.9	21	85	10	55	35	10	2	52	1.48
2049377--2049531	81	1.9	82	81	1	186	34	14	11	39	1.82
2049468--2049590	40	3.1	39	80	5	131	36	14	8	39	1.78
2049373--2049604	79	2.9	78	77	5	185	36	14	10	39	1.80
2049485--2049602	40	3.0	39	80	3	128	40	11	8	39	1.71
2050305--2050413	54	2.1	54	80	10	120	54	0	4	40	1.27
2050812--2050858	18	2.7	18	93	3	78	38	6	27	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2051256--2051824	263	2.1	265	89	5	864	40	18	11	29	1.86
2053942--2054000	21	2.8	21	89	0	82	18	6	20	54	1.66
2054893--2054984	32	2.9	32	93	0	148	25	27	27	20	1.99
2061397--2061436	13	2.9	14	88	7	55	42	7	10	40	1.67
2061915--2062022	44	2.4	45	89	1	155	29	18	18	33	1.95
2065876--2066096	117	1.9	117	83	3	284	28	14	9	48	1.73
2071343--2071678	9	36.1	9	70	20	155	15	9	1	74	1.13
2071327--2071576	31	8.3	30	70	23	104	16	8	0	74	1.07
2071416--2071615	48	4.2	47	77	12	151	16	8	1	74	1.11
2071449--2071600	5	28.8	5	75	18	107	17	7	0	75	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14