genome.fa.s8702.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008702.1 Hibiscus syriacus cultivar Beakdansim tig00111741_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3201804

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  5  of  14  ( 1641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
891653--891704	14	3.7	15	76	19	51	63	0	1	34	1.06
891653--891703	11	4.6	11	73	9	50	62	0	1	35	1.06
891653--891704	3	17.7	3	76	11	54	63	0	1	34	1.06
895922--895956	13	2.7	13	86	0	52	37	17	8	37	1.80
905472--905510	4	9.8	4	94	0	51	17	0	30	51	1.46
905723--905782	2	30.0	2	100	0	120	50	0	0	50	1.00
920934--920988	2	28.0	2	96	3	103	50	0	0	49	1.00
921183--921230	2	24.0	2	100	0	96	50	0	0	50	1.00
922618--922666	21	2.5	19	76	23	57	71	0	0	28	0.86
925589--925836	130	1.9	125	88	7	374	44	15	17	22	1.86
927008--927569	132	4.1	136	79	8	570	27	14	27	30	1.95
927573--927610	19	2.0	19	100	0	76	42	10	21	26	1.85
927654--927819	36	4.8	36	70	19	120	37	12	19	30	1.88
927592--927768	67	2.7	65	86	6	232	37	11	19	31	1.87
927736--927831	36	2.7	36	80	6	106	36	12	17	33	1.88
928034--928145	36	3.1	35	76	11	109	41	10	19	27	1.85
930560--930587	13	2.2	13	100	0	56	0	21	7	71	1.09
930553--930595	13	2.9	15	80	16	54	0	20	4	74	1.00
930784--930840	12	4.7	13	73	20	52	1	15	5	77	1.03
930792--930826	10	3.3	10	88	11	52	0	11	2	85	0.69
931614--931652	11	3.5	11	86	6	51	61	2	7	28	1.37
933706--933744	17	2.2	17	86	13	53	53	5	5	35	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
933842--933884	21	2.0	21	100	0	86	27	18	13	39	1.89
934824--934853	15	2.0	15	100	0	60	33	6	33	26	1.83
934919--934961	14	3.0	15	83	10	54	72	2	0	25	0.97
940128--940180	18	3.0	18	97	2	99	16	49	22	11	1.78
940185--940392	29	7.2	29	82	7	228	32	0	18	47	1.55
940190--940392	85	2.4	88	81	10	265	33	0	17	48	1.54
940187--940401	114	1.9	114	82	3	272	33	0	18	47	1.55
941096--941196	24	4.2	24	88	0	130	27	12	15	43	1.84
941077--941202	48	2.6	48	80	1	135	28	10	16	44	1.81
941109--941226	48	2.5	48	83	2	139	27	14	16	41	1.87
946916--946963	21	2.3	21	92	0	87	43	12	8	35	1.73
947498--947728	29	8.0	29	83	7	256	33	1	17	48	1.56
947498--947726	85	2.7	86	81	8	259	33	1	17	48	1.55
948430--948557	24	5.3	24	85	0	157	25	14	17	42	1.88
950624--950694	20	3.5	20	80	3	88	40	19	19	19	1.91
951241--951319	20	3.9	21	86	5	94	51	17	18	11	1.75
951301--951365	14	4.3	14	73	17	58	46	21	23	9	1.80
951296--951376	33	2.5	33	93	0	135	46	22	20	9	1.80
951394--951482	14	5.6	14	70	23	61	8	23	22	44	1.81
951377--951503	33	3.8	33	94	1	209	11	22	21	44	1.83
951372--951531	19	9.1	19	68	21	107	11	23	19	46	1.82
953227--953512	94	3.1	93	95	1	500	21	12	18	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953606--953682	33	2.3	33	90	0	127	46	19	23	10	1.80
953666--953703	20	1.9	20	100	0	76	50	28	15	5	1.66
953709--953806	19	5.7	19	70	22	99	10	21	21	46	1.80
953712--953836	33	3.8	33	91	2	200	11	22	20	45	1.83
953712--953827	14	7.1	15	69	24	67	11	22	19	46	1.81
954313--954379	21	3.2	21	66	6	55	23	35	20	19	1.95
954291--954379	42	2.1	42	81	8	101	23	35	20	20	1.95
955719--955754	14	2.6	14	95	0	63	33	0	22	44	1.53
955861--955899	19	2.1	19	90	0	60	51	17	17	12	1.76
955869--955926	19	3.3	19	73	26	65	50	20	20	8	1.75
955936--956029	33	2.8	33	91	0	152	12	22	18	46	1.82
955971--956049	19	4.4	19	70	16	69	16	21	17	44	1.87
956023--956095	20	3.6	20	68	17	51	24	17	23	34	1.96
956287--956317	12	2.6	12	100	0	62	16	9	25	48	1.76
958592--958643	24	2.2	24	82	0	59	36	17	19	26	1.94
960842--960990	2	77.0	2	82	9	139	43	3	3	49	1.35
964774--964825	19	2.7	19	100	0	104	26	34	21	17	1.95
964848--964890	19	2.4	19	84	7	54	23	27	20	27	1.99
972807--972989	64	2.9	62	80	10	201	30	24	19	25	1.98
972758--972989	127	1.8	129	84	10	323	30	25	18	25	1.98
972937--972985	19	2.6	19	84	9	57	24	28	20	26	1.99
979103--979172	27	2.5	27	90	4	104	57	15	14	12	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
981098--981138	18	2.3	18	86	0	55	41	0	2	56	1.13
986865--987661	255	3.1	255	83	4	1021	33	13	17	35	1.89
987834--988121	45	6.4	45	82	5	300	22	14	19	43	1.87
987834--988121	90	3.2	90	82	6	334	22	14	19	43	1.87
988040--988228	51	3.7	51	82	7	208	23	18	17	39	1.92
988840--989426	134	4.4	133	79	3	579	31	18	18	30	1.96
988840--989425	268	2.2	268	80	3	660	31	18	18	30	1.96
990459--990519	27	2.2	28	85	2	79	57	16	11	14	1.65
990458--990525	28	2.4	28	80	7	75	57	16	13	13	1.66
992817--992984	56	3.0	56	87	2	230	30	10	17	41	1.83
993283--993373	20	4.6	20	97	0	155	27	28	16	27	1.97
993561--993929	176	2.1	177	87	1	517	30	15	18	35	1.92
995060--995088	15	1.9	15	100	0	58	20	31	41	6	1.79
995843--995880	20	1.9	20	84	10	51	50	2	5	42	1.39
999217--999260	17	2.6	17	89	3	72	31	6	18	43	1.76
999410--999450	22	1.9	21	85	5	55	70	2	2	24	1.11
999848--999926	2	39.5	2	100	0	158	49	0	0	50	1.00
1001167--1001224	18	3.1	19	80	9	82	20	22	29	27	1.99
1001161--1001225	20	3.3	20	80	8	89	23	20	30	26	1.98
1003947--1004028	40	2.0	40	100	0	164	23	17	26	32	1.96
1004176--1004304	47	2.8	46	87	4	197	37	6	21	34	1.79
1004133--1004304	94	1.9	91	87	4	256	37	6	22	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010778--1010939	40	4.1	40	93	0	288	23	17	25	33	1.96
1011044--1011212	47	3.7	46	79	8	148	36	8	23	32	1.84
1011088--1011215	47	2.8	46	86	4	195	35	7	21	34	1.83
1015173--1015197	3	8.3	3	100	0	50	0	0	32	68	0.90
1017527--1017609	18	4.3	20	79	15	104	21	19	32	26	1.97
1017532--1017606	38	1.9	39	94	2	134	20	20	32	28	1.97
1040844--1040874	16	1.9	16	100	0	62	32	6	6	54	1.51
1046950--1046983	17	2.0	17	88	11	52	35	5	17	41	1.74
1048510--1048553	13	3.4	13	93	0	70	15	40	22	20	1.90
1048532--1048582	14	3.7	14	82	7	52	17	31	23	27	1.97
1048582--1048656	29	2.6	29	93	0	132	29	0	24	46	1.53
1053953--1054022	29	2.4	29	95	0	122	31	0	20	48	1.50
1056310--1056358	21	2.4	20	80	6	62	51	2	2	44	1.24
1056346--1056375	14	2.1	14	93	6	51	23	0	0	76	0.78
1056951--1057002	23	2.2	25	82	6	63	38	7	1	51	1.42
1057800--1057845	6	7.3	6	86	13	58	45	6	32	15	1.71
1062027--1062120	46	2.0	46	97	0	179	17	26	10	45	1.80
1062923--1062989	32	2.2	30	81	5	71	62	11	11	13	1.54
1065879--1065914	18	2.0	18	100	0	72	38	5	22	33	1.77
1065982--1066037	20	2.7	21	83	13	71	33	0	1	64	1.04
1069246--1069343	24	4.1	24	93	0	160	22	14	20	42	1.88
1072602--1073342	128	5.8	129	81	3	735	25	29	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1072643--1073342	257	2.7	256	82	3	807	25	30	17	27	1.97
1081509--1081572	15	4.1	14	77	20	58	78	7	10	3	1.07
1083034--1084725	106	16.0	106	89	1	2334	34	24	17	23	1.96
1085455--1085559	37	2.8	37	85	0	147	40	14	14	30	1.85
1086240--1086280	11	3.6	11	87	6	55	24	4	4	65	1.32
1086497--1086528	2	16.0	2	100	0	64	50	0	0	50	1.00
1092514--1092568	19	2.9	19	74	15	60	65	1	9	23	1.31
1092652--1092779	21	6.2	19	69	24	66	65	0	3	29	1.16
1092665--1092764	22	4.5	22	73	16	73	65	1	3	31	1.15
1092728--1092781	15	3.5	15	78	14	56	68	1	1	27	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14