genome.fa.s8709.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008709.1 Hibiscus syriacus cultivar Beakdansim tig00111758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3030657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  2  of  15  ( 1745 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357746--357865	43	2.8	43	83	0	150	25	30	20	23	1.98
366889--366924	6	6.0	6	96	0	63	36	30	0	33	1.58
368340--368378	2	19.5	2	100	0	78	51	0	0	48	1.00
368763--368820	31	1.9	30	85	3	80	53	5	6	34	1.50
370876--370938	27	2.5	26	82	7	67	68	3	1	26	1.14
382342--382380	19	2.1	19	85	0	51	28	23	10	38	1.87
384812--384872	28	2.1	29	84	6	79	40	3	19	36	1.68
387055--387098	14	3.1	14	87	6	63	25	2	20	52	1.58
387170--387266	36	2.7	35	83	12	133	26	14	12	46	1.80
389944--390135	94	2.0	95	88	1	287	34	17	18	29	1.93
390619--390654	19	1.9	18	88	5	54	2	0	25	72	0.98
392023--392808	83	9.5	83	86	1	963	35	22	18	23	1.96
392022--392808	163	4.7	164	84	4	954	35	22	18	23	1.96
394552--394653	2	55.5	2	81	16	123	44	0	0	54	1.06
394886--394969	37	2.4	36	78	11	93	14	4	2	78	1.01
394911--394969	9	6.6	9	78	7	57	13	3	1	81	0.90
394943--395021	35	2.2	36	82	13	101	18	5	2	73	1.13
394988--395058	4	18.0	4	71	18	51	22	4	1	71	1.11
394939--395064	59	2.2	58	80	13	143	21	3	2	72	1.13
398337--398382	10	4.6	10	81	8	58	15	30	30	23	1.95
398696--398721	2	13.0	2	100	0	52	50	0	0	50	1.00
403099--403133	16	2.1	17	89	5	54	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403506--403542	17	2.1	18	85	14	51	35	0	5	59	1.20
403462--403571	51	2.2	51	88	3	159	37	1	3	57	1.27
404484--404610	62	2.0	62	82	5	150	40	17	11	30	1.84
404930--404985	26	2.2	26	83	6	69	41	1	1	55	1.21
413985--414122	46	3.2	46	65	19	125	39	11	24	23	1.88
413858--414211	165	2.1	166	85	3	473	40	12	23	23	1.88
413858--414211	82	4.3	82	86	3	444	40	12	23	23	1.88
414719--414744	10	2.6	10	100	0	52	57	0	0	42	0.98
417066--417112	24	2.0	24	86	0	67	51	0	2	46	1.13
426784--426812	2	14.5	2	100	0	58	51	0	0	48	1.00
437279--437315	13	2.8	13	87	4	56	48	8	32	10	1.67
444731--444767	15	2.5	15	91	4	58	27	0	0	72	0.84
444730--444769	21	1.9	21	90	10	64	30	0	0	70	0.88
445061--445110	17	2.9	17	87	0	73	34	42	12	12	1.79
449096--449132	2	18.5	2	100	0	74	51	48	0	0	1.00
450495--450640	36	4.0	36	80	7	152	32	19	12	35	1.89
450509--450640	37	3.6	36	82	4	158	30	19	12	37	1.88
450495--450640	73	2.0	73	83	2	186	32	19	12	35	1.89
450755--450944	69	2.8	69	79	4	188	29	21	12	36	1.90
451006--451079	38	1.9	39	83	8	98	41	20	9	28	1.83
451036--451105	32	2.2	33	84	2	88	38	15	10	35	1.81
451227--451369	40	3.5	40	81	3	142	23	37	18	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451661--451696	3	12.0	3	88	11	56	30	0	0	69	0.89
451660--451719	27	2.2	28	80	14	72	33	1	1	63	1.14
460662--460687	13	2.0	13	100	0	52	46	7	0	46	1.31
469392--469429	20	1.9	20	88	0	58	28	26	10	34	1.90
471535--471569	18	1.9	18	94	0	61	31	8	22	37	1.85
474366--474424	31	1.9	31	92	0	100	25	20	22	32	1.98
479108--479166	27	2.2	27	96	0	109	49	0	13	37	1.43
479490--479537	18	2.8	16	76	14	51	58	4	2	35	1.29
482036--482073	17	2.2	17	86	9	51	7	31	0	60	1.25
482627--482704	21	3.7	21	79	6	68	35	19	20	24	1.95
485411--485615	64	3.2	64	76	13	179	31	23	18	26	1.97
492975--493018	21	2.1	21	86	0	61	9	36	15	38	1.80
493604--493683	31	2.6	31	89	0	115	32	2	35	30	1.71
494047--494204	64	2.5	65	86	4	205	31	23	16	28	1.96
498913--499022	45	2.5	45	77	1	114	27	20	23	29	1.99
501426--501494	22	3.0	22	85	8	86	69	2	0	27	1.02
501426--501491	23	2.9	23	84	8	82	69	3	0	27	1.03
501457--501493	14	2.4	17	78	21	53	67	0	0	32	0.91
501429--501508	22	3.4	22	78	15	72	66	3	2	27	1.22
501935--502031	4	24.0	4	67	10	54	63	4	4	27	1.31
501935--501978	23	1.9	23	100	0	88	65	2	0	31	1.05
501937--502057	58	2.2	53	80	14	129	62	4	4	28	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502018--502074	30	1.9	30	88	0	87	63	5	3	28	1.33
502476--502576	34	2.8	37	86	13	158	42	14	14	27	1.85
503156--503190	16	2.1	18	89	10	56	25	8	0	65	1.21
503139--503201	27	2.4	27	81	7	67	22	7	1	68	1.24
504445--504482	19	2.0	20	89	5	60	7	23	0	68	1.16
507864--507945	16	5.1	16	74	22	66	78	8	13	0	0.97
507870--507936	23	3.0	22	77	20	59	79	7	13	0	0.94
507871--507944	37	2.0	37	84	12	98	78	8	13	0	0.96
507870--507937	8	8.8	8	74	6	59	79	7	13	0	0.93
509011--509046	18	2.0	18	88	0	54	19	8	30	41	1.81
509474--509795	36	9.1	35	73	12	221	26	18	13	40	1.89
509551--509648	21	5.2	21	60	26	58	27	19	11	41	1.85
509527--509795	72	3.8	71	76	10	266	26	19	13	41	1.88
509546--509870	138	2.4	137	82	3	418	28	19	12	39	1.87
509763--509921	65	2.4	67	86	3	205	33	20	9	37	1.85
509530--509836	174	1.8	168	83	8	397	28	19	12	39	1.88
510543--511203	105	6.3	105	91	2	963	33	26	18	22	1.97
511751--511852	34	2.8	37	89	10	167	43	14	14	27	1.85
512429--512463	16	2.1	18	89	10	56	25	8	0	65	1.21
517350--517376	12	2.2	12	100	0	54	14	18	18	48	1.82
534288--534325	16	2.4	16	100	0	76	18	10	28	42	1.83
534742--534807	30	2.2	30	80	0	78	40	16	16	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
540073--540230	21	7.8	20	72	7	86	38	25	17	18	1.92
540197--540506	20	15.5	20	87	1	352	37	24	17	20	1.94
541188--541234	24	2.0	24	87	8	69	25	14	21	38	1.92
543679--543806	33	3.7	33	70	18	107	46	17	19	15	1.84
543679--543806	53	2.4	52	92	3	204	46	17	19	15	1.84
543679--543815	19	7.7	19	78	17	159	45	18	20	16	1.86
543824--543921	19	5.4	19	84	13	143	14	22	17	45	1.84
543805--543921	53	2.2	53	96	1	218	13	24	17	43	1.86
544028--544064	14	2.6	14	91	0	65	45	21	0	32	1.52
545986--546051	19	3.4	20	87	6	91	45	27	16	10	1.80
546042--546096	14	3.6	14	76	21	56	47	21	20	10	1.80
546023--546101	33	2.4	33	95	0	140	45	21	21	11	1.83
546002--546090	19	5.1	17	78	16	78	49	22	19	8	1.76
546097--546225	19	7.3	19	73	17	116	8	16	28	46	1.76
546097--546188	33	2.8	33	90	3	141	7	17	28	46	1.75
546273--546741	93	5.1	93	98	0	913	46	18	12	22	1.83
548447--548536	14	5.7	14	69	23	63	44	22	23	10	1.82
548439--548553	33	3.5	33	97	0	221	46	20	22	10	1.80
548461--548558	19	5.7	19	69	22	90	44	21	22	11	1.83
548570--548626	14	3.7	14	75	20	60	8	24	22	43	1.81
548554--548634	33	2.5	33	95	0	144	8	22	22	46	1.78
548611--548686	21	3.7	21	83	3	109	11	25	17	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548610--548687	41	1.9	41	97	0	147	12	25	16	44	1.83
548766--548836	33	2.2	33	92	0	115	47	18	22	11	1.80
549022--549075	22	2.3	25	72	24	62	20	20	37	22	1.95
549219--549372	20	7.7	20	81	7	168	18	18	26	37	1.93
549218--549372	40	3.8	40	82	4	186	18	18	26	37	1.93
549359--549441	21	4.0	21	73	6	78	25	16	24	33	1.96
549339--549437	42	2.4	43	77	11	100	21	18	23	37	1.94
553137--553192	21	2.7	21	88	0	85	25	21	21	32	1.98
554092--554126	18	1.9	18	88	0	52	20	17	37	25	1.94
557275--557323	21	2.3	21	96	0	89	40	4	22	32	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15