genome.fa.s8709.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008709.1 Hibiscus syriacus cultivar Beakdansim tig00111758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3030657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  3  of  15  ( 1745 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558072--558128	24	2.6	22	82	15	73	28	19	26	26	1.99
558856--558908	18	2.9	18	88	0	79	18	22	32	26	1.97
559300--559339	21	1.9	21	85	10	55	57	0	15	27	1.38
562725--562814	19	4.7	19	87	0	135	28	15	28	26	1.96
562725--562814	38	2.4	38	98	0	171	28	15	28	26	1.96
563649--563701	18	2.9	18	91	0	88	20	20	32	26	1.98
570246--570314	11	6.6	10	72	20	52	75	0	2	21	0.93
570245--570415	9	18.8	9	64	11	62	74	1	3	20	1.03
570245--570331	14	6.3	14	74	11	63	75	0	3	20	0.94
570273--570330	17	3.6	15	77	18	55	74	0	3	22	0.97
570357--570391	15	2.4	15	90	4	54	74	0	2	22	0.95
570347--570424	26	3.1	24	80	15	70	76	2	3	16	1.04
574806--574857	28	1.9	26	85	14	70	36	1	5	55	1.35
576057--576090	15	2.3	15	100	0	68	17	50	5	26	1.69
577184--577271	6	13.3	7	74	21	50	78	3	1	17	0.95
577182--577256	36	2.1	34	85	9	98	78	2	1	17	0.93
577196--577271	6	12.8	6	74	19	54	80	2	1	15	0.90
577218--577275	21	2.7	22	92	7	102	82	3	0	13	0.79
577227--577265	15	2.6	16	88	8	55	87	5	0	7	0.68
577185--577277	21	4.6	19	81	12	80	77	4	1	17	0.99
577342--577370	3	9.7	3	100	0	58	68	0	0	31	0.89
578668--578909	38	6.9	37	83	12	250	49	5	2	42	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578670--578908	36	6.8	36	81	12	200	49	5	2	42	1.39
578942--579027	38	2.3	38	82	8	95	39	8	6	45	1.61
579119--579163	19	2.3	19	85	11	56	33	2	6	57	1.37
579341--579505	73	2.3	72	87	1	231	30	25	19	24	1.98
585639--585676	19	2.0	20	89	5	60	13	26	0	60	1.33
598167--598198	16	2.0	16	93	0	55	46	6	12	34	1.67
598861--598896	18	1.9	18	94	5	63	0	30	25	44	1.54
598861--598911	18	2.8	19	85	5	52	1	27	25	45	1.64
600454--600515	23	2.7	23	83	11	92	20	25	29	24	1.99
603013--603057	21	2.1	21	87	0	63	31	28	24	15	1.96
604469--604536	23	3.0	23	84	0	91	19	26	25	29	1.98
609472--609539	23	3.0	23	84	0	91	19	26	25	29	1.98
612302--612341	21	1.9	21	85	10	55	35	10	2	52	1.48
614517--614541	13	1.9	13	100	0	50	40	8	8	44	1.63
618919--619415	41	12.1	41	89	3	641	34	24	19	21	1.96
619847--619937	19	4.4	20	74	17	87	30	28	5	35	1.80
619858--619939	44	1.9	41	85	7	110	32	28	6	32	1.82
626957--626981	13	1.9	13	100	0	50	44	16	16	24	1.86
630255--630323	34	2.0	34	91	5	113	30	20	11	37	1.88
630974--631098	42	2.9	42	88	5	162	22	15	16	45	1.85
631306--631343	12	3.2	12	81	3	51	47	0	0	52	1.00
631290--631368	22	3.4	23	81	10	81	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631316--631403	30	2.8	31	86	10	119	43	0	1	55	1.07
631312--631414	32	3.2	32	81	9	97	47	0	0	51	1.07
631916--631972	14	4.0	14	77	4	60	33	15	3	47	1.63
632809--632835	12	2.2	12	100	0	54	33	7	0	59	1.25
639553--639598	22	2.1	22	100	0	92	39	15	15	30	1.88
640921--641073	65	2.4	64	88	3	218	30	20	18	30	1.96
647346--647392	13	3.7	13	88	5	69	34	12	4	48	1.61
649503--649656	65	2.4	65	90	2	229	30	21	18	29	1.97
650915--651091	39	4.4	40	87	2	214	24	19	26	29	1.98
650917--651075	40	3.9	40	89	3	212	23	18	27	30	1.97
659298--659344	20	2.5	19	80	16	53	65	0	10	23	1.23
659429--659499	21	3.3	21	78	9	65	70	0	2	26	1.01
659691--659739	11	4.5	11	72	23	50	61	0	4	34	1.15
660219--660322	37	2.8	37	91	0	154	31	12	14	41	1.83
661073--662341	106	12.0	106	89	2	1874	22	18	24	34	1.96
662349--662379	15	2.1	15	100	0	62	19	41	12	25	1.87
663291--663344	22	2.5	22	100	0	108	24	12	25	37	1.91
663965--664030	15	4.4	14	81	14	69	0	15	7	77	0.98
663965--664032	31	2.2	31	82	14	88	0	16	7	76	1.00
667470--667515	20	2.3	20	92	0	74	0	36	32	30	1.58
668331--668386	20	2.8	20	76	12	62	69	1	7	21	1.22
668488--668564	22	3.3	22	80	14	75	66	0	3	29	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668474--668564	22	4.1	21	76	18	69	67	0	4	28	1.10
668695--668720	13	2.0	13	100	0	52	69	0	7	23	1.14
668740--668790	5	9.8	5	77	14	50	62	0	3	33	1.13
668739--668789	26	2.0	26	88	0	75	62	0	3	33	1.13
669266--669363	37	2.6	37	90	0	142	31	13	14	40	1.84
671404--671448	21	2.3	19	81	11	54	28	15	17	37	1.91
671405--671443	21	1.9	20	89	5	60	30	15	17	35	1.91
673047--673129	43	1.9	44	90	2	132	38	3	28	28	1.74
673712--673748	18	2.1	18	100	0	74	56	10	0	32	1.34
675313--675376	13	4.9	13	100	0	128	62	0	29	7	1.23
675322--675386	13	5.4	11	94	3	67	60	0	32	7	1.25
675809--675834	4	6.5	4	100	0	52	76	0	0	23	0.78
684492--684534	2	23.5	2	82	17	58	46	0	0	53	1.00
685532--685570	15	2.7	14	88	4	51	41	0	0	58	0.98
687251--687288	14	2.7	14	95	0	67	36	21	18	23	1.95
688458--688896	44	9.8	45	91	3	708	39	6	22	31	1.80
688458--688896	90	4.9	90	95	0	774	39	6	22	31	1.80
694208--694286	24	3.7	22	75	19	71	30	18	26	24	1.98
698872--698952	3	26.7	3	74	16	69	58	2	1	38	1.20
698890--698949	5	11.2	5	78	16	50	58	1	1	38	1.18
698900--698953	17	3.4	17	75	14	62	57	0	1	40	1.09
698874--698952	22	3.4	23	78	18	83	58	2	1	37	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
699096--699149	20	2.7	20	88	0	72	29	20	24	25	1.99
699116--699539	100	4.2	100	90	1	636	34	18	13	33	1.91
699116--699539	201	2.1	199	90	2	654	34	18	13	33	1.91
707152--707212	23	2.8	21	72	18	61	54	6	1	37	1.37
708444--708515	3	23.7	3	78	13	76	58	1	1	38	1.15
708988--709026	16	2.4	17	83	16	55	58	2	5	33	1.33
714745--714787	18	2.4	18	84	7	52	65	2	9	23	1.34
716476--716514	14	2.7	14	84	4	51	2	20	2	74	1.06
716493--716566	25	2.7	27	80	16	82	8	20	4	67	1.33
723013--723055	18	2.4	18	84	7	52	65	2	9	23	1.34
724489--724575	20	4.3	20	87	8	106	39	18	18	24	1.92
724670--724737	20	3.4	20	78	8	84	32	20	11	35	1.89
725681--725758	24	3.2	24	88	0	120	23	19	17	39	1.92
728030--728065	6	6.0	6	86	0	54	61	19	2	16	1.47
728032--728072	12	3.4	12	86	0	55	56	21	2	19	1.54
728378--728510	20	6.7	20	88	3	187	48	23	18	9	1.78
728393--728514	60	2.0	60	93	0	208	48	23	17	10	1.78
728704--728776	20	3.7	20	90	0	119	46	24	17	10	1.80
729045--729084	15	2.7	15	96	0	71	37	22	0	40	1.54
730049--730098	21	2.4	21	93	0	82	18	22	40	20	1.92
730064--730150	21	4.1	21	77	5	86	26	16	35	21	1.94
732274--732309	19	1.9	18	88	5	54	50	19	16	13	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
732323--732370	20	2.4	20	92	0	78	10	16	22	50	1.76
732862--732899	20	2.0	20	84	5	51	44	13	15	26	1.83
732925--733055	20	6.5	20	70	10	88	24	15	18	41	1.88
734322--734358	19	1.9	19	89	10	58	37	8	18	35	1.81
734437--734494	21	2.7	21	97	2	107	24	27	17	31	1.97
738256--738280	13	1.9	13	100	0	50	16	8	12	64	1.49
738805--738867	3	21.7	3	72	18	53	63	0	3	33	1.10
739431--739489	30	1.9	31	86	3	84	37	10	15	37	1.81
739917--740036	33	3.4	32	79	10	105	43	13	11	31	1.80
747746--747973	75	3.0	75	100	0	456	18	21	27	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15