genome.fa.s8709.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008709.1 Hibiscus syriacus cultivar Beakdansim tig00111758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3030657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  9  of  15  ( 1745 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1744637--1744675	17	2.3	17	86	0	51	64	2	2	30	1.21
1750074--1750112	17	2.3	17	86	8	53	28	7	23	41	1.82
1750119--1750162	16	2.8	16	89	10	72	59	0	0	40	0.98
1751653--1751962	33	8.9	35	65	19	114	45	4	4	45	1.44
1751418--1751919	2	245.0	2	63	19	85	44	5	5	45	1.49
1752401--1752454	26	2.0	27	82	10	67	42	24	5	27	1.76
1752865--1752916	18	2.9	18	100	0	104	26	34	23	15	1.94
1754605--1754698	11	8.5	11	71	13	59	51	7	2	39	1.42
1754639--1754683	20	2.2	20	84	0	54	55	11	2	31	1.47
1754648--1754685	20	1.9	20	94	0	67	50	13	2	34	1.55
1754720--1754777	24	2.4	24	88	0	89	48	5	0	46	1.24
1754802--1754845	13	3.3	14	78	12	56	50	2	4	43	1.35
1754680--1754805	40	3.1	41	73	13	116	46	6	3	43	1.45
1754783--1754825	19	2.3	18	85	14	61	53	0	4	41	1.21
1754782--1754843	19	3.6	18	69	26	53	50	1	4	43	1.33
1754860--1754899	15	2.6	16	84	8	55	42	0	7	50	1.30
1754738--1755123	2	201.0	2	66	23	120	49	3	4	42	1.42
1756179--1756226	24	2.0	24	84	8	62	18	0	8	72	1.08
1756200--1756247	20	2.3	21	85	10	71	16	2	4	77	1.03
1756187--1756250	10	6.7	9	77	10	56	14	1	6	78	1.02
1758381--1758454	20	3.4	21	76	10	62	60	2	4	32	1.29
1767875--1767941	9	7.7	9	74	12	50	20	1	5	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1767867--1767939	17	4.2	16	72	10	56	19	2	5	72	1.16
1767867--1767941	26	2.9	25	76	6	78	20	2	5	72	1.17
1770151--1770204	22	2.5	22	87	0	72	25	9	25	38	1.86
1770788--1770824	19	1.9	19	94	0	65	45	2	10	40	1.53
1772084--1772134	23	2.2	24	85	3	68	33	0	0	66	0.92
1773069--1773170	51	2.0	51	86	3	143	36	20	21	21	1.95
1784554--1784630	31	2.5	31	82	2	91	11	28	31	28	1.92
1785521--1785578	31	2.0	30	86	10	84	48	1	0	50	1.11
1785560--1785613	23	2.3	23	78	15	58	50	3	1	44	1.30
1785736--1785801	23	2.9	24	82	6	75	48	3	1	46	1.26
1785754--1785798	24	2.0	24	86	8	67	46	4	2	46	1.35
1785905--1785965	22	2.8	21	78	9	59	52	1	3	42	1.27
1791285--1791805	41	12.6	41	81	5	471	28	19	17	33	1.95
1791318--1791764	124	3.6	123	80	3	367	29	19	16	34	1.94
1791322--1791803	166	2.9	166	88	0	714	28	19	17	34	1.94
1796744--1796987	43	5.7	43	80	4	242	22	21	20	34	1.96
1796744--1796966	85	2.6	86	82	5	283	22	21	21	34	1.96
1796741--1797006	128	2.1	130	79	8	285	23	21	20	34	1.96
1797710--1797799	32	2.7	34	73	16	89	67	0	8	23	1.18
1797758--1797817	31	1.9	31	83	12	79	76	1	5	16	1.04
1797756--1797870	40	2.9	39	78	8	119	73	2	6	16	1.16
1797758--1797830	28	2.5	29	80	10	78	78	1	4	16	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1797955--1797997	18	2.4	18	92	0	68	72	0	6	20	1.08
1799603--1800230	86	7.3	86	89	2	949	20	23	25	31	1.98
1800045--1800179	44	3.2	42	64	23	102	18	27	23	30	1.98
1804168--1804193	12	2.2	12	100	0	52	42	7	26	23	1.81
1815106--1815148	18	2.4	18	84	0	50	25	4	0	69	1.07
1818127--1818168	15	2.8	15	88	0	57	21	7	0	71	1.09
1818130--1818168	20	2.0	20	94	0	69	23	7	0	69	1.14
1819894--1819934	21	1.9	21	85	5	55	19	12	4	63	1.46
1821999--1822031	15	2.4	14	90	10	50	72	0	0	27	0.85
1822409--1822455	20	2.3	20	81	0	58	42	23	25	8	1.82
1823787--1824716	305	3.0	310	82	7	1020	39	14	12	33	1.84
1825803--1825865	27	2.3	27	100	0	126	25	0	33	41	1.56
1826022--1826082	12	5.0	12	71	11	52	44	3	8	44	1.50
1825967--1826400	37	11.6	37	85	5	538	44	3	9	42	1.54
1826414--1826509	17	5.8	16	75	15	63	14	5	1	79	0.96
1826424--1826500	21	3.6	22	83	10	90	14	5	1	79	0.97
1826416--1826508	6	15.5	6	72	18	70	13	5	1	79	0.96
1826462--1826507	11	4.3	11	86	13	69	15	0	0	84	0.62
1833526--1833574	3	16.3	3	100	0	98	32	0	0	67	0.91
1833593--1833644	16	3.2	17	72	22	58	40	0	23	36	1.55
1835023--1835123	37	2.8	36	84	6	123	38	14	15	30	1.88
1835639--1835720	25	3.2	26	67	19	82	32	9	3	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1835633--1835741	50	2.2	50	100	0	218	30	11	3	55	1.52
1835872--1835905	16	2.1	16	88	0	50	32	5	0	61	1.20
1835886--1835935	21	2.4	22	80	10	59	28	4	2	66	1.21
1839241--1839302	23	2.7	22	80	9	72	79	6	14	0	0.93
1839241--1839309	20	3.2	20	82	10	66	79	5	13	1	0.97
1839285--1839320	18	1.9	19	88	5	56	80	5	11	2	0.98
1839918--1839968	22	2.3	22	96	0	93	35	27	9	27	1.88
1840828--1840931	36	2.9	36	88	0	154	23	24	14	38	1.92
1840920--1841079	50	3.2	50	64	7	133	31	20	12	36	1.89
1840963--1841135	37	4.9	37	69	21	129	28	20	13	37	1.90
1840846--1841200	102	3.5	102	92	0	577	29	21	12	36	1.91
1840983--1841300	167	1.9	169	93	2	552	30	20	12	36	1.90
1841106--1841265	65	2.5	65	95	0	293	30	21	13	35	1.91
1841171--1841406	104	2.3	104	80	3	255	26	19	13	39	1.90
1841373--1841444	37	1.9	37	82	0	90	26	22	11	40	1.87
1841719--1842689	98	9.4	98	77	10	777	32	24	20	21	1.98
1841714--1842689	109	9.4	103	79	6	969	32	24	21	21	1.98
1841727--1842686	203	4.6	203	83	5	1059	32	24	20	21	1.98
1843140--1843240	37	2.8	36	84	6	123	38	14	15	30	1.88
1843755--1843866	52	2.2	51	98	1	215	30	10	3	55	1.51
1843997--1844030	16	2.1	16	88	0	50	32	5	0	61	1.20
1844011--1844050	20	2.0	20	85	5	53	27	5	2	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1844971--1845021	16	3.1	16	71	23	52	72	1	1	23	1.05
1852298--1852349	2	25.5	2	96	3	95	50	0	1	48	1.12
1852448--1852486	2	20.0	2	89	5	62	46	0	0	53	1.00
1861109--1861564	42	10.5	42	71	13	296	27	19	22	30	1.98
1861129--1861204	22	3.6	20	68	16	55	23	21	22	32	1.98
1861166--1861519	135	2.6	135	90	2	541	28	19	22	29	1.98
1861442--1861516	22	3.5	21	68	15	64	28	18	20	33	1.96
1861834--1862036	53	3.8	53	94	0	334	31	22	25	20	1.98
1861834--1862083	106	2.4	106	86	2	324	30	20	25	23	1.98
1868582--1868627	12	3.8	12	94	0	65	13	0	30	56	1.37
1869416--1869587	20	8.5	19	71	9	92	36	12	23	27	1.91
1869394--1869590	40	4.9	40	76	6	146	35	12	23	28	1.91
1869402--1869564	60	2.7	60	84	0	182	38	12	22	26	1.90
1871621--1871660	18	2.2	18	86	4	53	45	0	2	52	1.14
1871839--1871871	2	16.5	2	100	0	66	51	0	0	48	1.00
1895500--1895533	18	1.9	17	88	5	50	35	11	23	29	1.90
1895922--1895975	15	3.6	15	76	0	63	31	5	20	42	1.75
1896367--1896494	65	2.0	65	87	6	188	28	0	14	57	1.39
1897116--1897172	10	5.5	11	72	17	50	38	0	0	61	0.96
1904657--1904757	44	2.3	43	86	5	132	25	18	27	27	1.98
1904662--1904738	23	3.5	22	76	7	84	25	22	25	25	2.00
1910480--1910634	64	2.4	64	82	3	168	29	20	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1910524--1910664	64	2.2	65	86	5	189	31	18	21	28	1.97
1911700--1911731	14	2.2	15	94	5	57	18	3	0	78	0.89
1911699--1911734	5	7.2	5	87	12	56	19	2	0	77	0.88
1913354--1913415	32	1.9	32	84	12	83	25	0	11	62	1.28
1917111--1917152	15	2.7	15	88	3	57	57	11	21	9	1.63
1921630--1921660	12	2.6	12	94	0	53	12	6	9	70	1.31
1923476--1923603	2	64.5	2	84	1	168	45	0	0	53	1.05
1923851--1923887	13	2.8	13	91	0	56	29	13	21	35	1.92
1923660--1923842	85	2.2	85	89	4	280	32	18	20	28	1.96
1924607--1924654	19	2.6	18	77	9	51	22	4	2	70	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15