genome.fa.s8709.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008709.1 Hibiscus syriacus cultivar Beakdansim tig00111758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3030657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  4  of  15  ( 1745 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755541--755594	20	2.7	21	80	16	69	33	11	12	42	1.79
756306--756345	20	2.0	20	100	0	80	60	10	0	30	1.30
756549--756604	18	3.1	18	72	12	53	42	0	0	57	0.99
756718--756759	16	2.6	16	84	0	57	14	11	26	47	1.78
757134--757176	21	2.0	21	90	0	68	30	23	13	32	1.93
759635--760076	44	10.0	44	90	1	634	23	22	12	40	1.88
759974--760049	24	3.3	24	66	26	74	25	18	14	42	1.88
760137--760174	17	2.2	18	90	4	60	50	18	0	31	1.47
764821--764893	22	3.3	22	78	3	83	16	23	36	23	1.94
764822--764899	23	3.4	23	77	8	79	15	23	37	24	1.93
766483--766547	19	3.4	19	97	0	121	29	30	16	23	1.96
768754--768793	21	1.9	21	85	10	55	35	10	2	52	1.48
771660--771784	3	41.0	3	87	3	178	36	0	1	61	1.06
773158--773204	20	2.3	21	75	10	53	25	4	8	61	1.43
773247--773291	25	1.9	24	82	13	58	44	0	0	55	0.99
780639--780862	84	2.7	84	93	2	405	29	13	21	36	1.91
783443--783497	22	2.5	22	93	0	101	34	10	14	40	1.81
783900--784569	113	6.0	113	89	3	940	37	13	18	29	1.90
784975--785461	76	6.4	76	99	0	947	21	20	21	36	1.95
785592--785706	3	38.0	3	89	1	176	36	0	1	61	1.06
787076--787122	20	2.3	21	75	10	53	25	4	8	61	1.43
790718--790746	6	4.8	6	100	0	58	13	51	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
797205--797283	23	3.6	23	84	5	101	26	21	27	24	1.99
806153--806471	44	7.2	44	89	2	480	22	23	12	40	1.88
806880--806987	42	2.6	41	75	15	105	25	24	13	36	1.93
807315--807392	22	3.6	22	70	13	63	26	23	12	37	1.91
810100--810139	16	2.6	16	88	4	55	37	12	20	30	1.89
812379--812432	24	2.3	23	78	15	56	51	1	12	33	1.51
812671--812712	2	21.0	2	100	0	84	50	0	0	50	1.00
819248--819330	39	2.1	39	82	8	98	20	49	8	21	1.75
819784--819834	11	4.8	11	80	9	61	82	0	17	0	0.67
819786--819836	20	2.5	21	90	9	88	82	0	17	0	0.67
820479--820530	26	2.0	26	96	0	95	30	11	17	40	1.85
821874--821919	23	2.0	23	100	0	92	39	4	26	30	1.75
821878--821928	23	2.2	23	89	0	75	41	9	25	23	1.85
825979--826496	261	2.0	257	88	2	761	44	11	14	29	1.79
831427--831479	24	2.2	24	89	0	88	18	32	20	28	1.97
836077--836392	58	5.5	58	88	1	447	35	18	11	35	1.87
840749--841264	58	8.9	58	92	0	807	34	18	13	32	1.90
841589--841663	20	3.7	20	85	7	105	26	30	14	28	1.95
841607--841832	95	2.4	94	88	4	321	26	25	15	32	1.95
843744--843785	11	3.6	12	84	12	52	71	0	2	26	0.98
845134--845161	2	14.0	2	100	0	56	50	0	0	50	1.00
845225--845269	2	24.0	2	78	13	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
845226--845269	16	2.6	17	82	7	63	54	0	0	45	0.99
848620--848664	21	2.1	21	91	0	72	33	8	15	42	1.78
858601--858640	21	1.9	21	89	0	62	37	17	17	27	1.92
859158--859212	2	27.5	2	100	0	110	49	0	0	50	1.00
861246--861319	31	2.4	31	78	13	80	32	20	9	37	1.85
861978--862025	18	2.6	18	96	3	87	52	16	10	20	1.73
874471--874509	20	2.0	20	100	0	78	17	20	10	51	1.74
882376--882416	12	3.4	12	89	0	55	58	0	7	34	1.26
882384--882457	3	23.3	3	73	10	58	58	1	5	35	1.30
882558--882591	2	17.5	2	93	6	61	50	0	0	50	1.00
882609--882667	30	1.9	31	83	16	79	38	6	1	52	1.38
884471--884517	23	2.0	23	84	8	60	31	2	14	51	1.55
887090--887133	15	2.9	15	90	6	63	59	15	0	25	1.37
890052--890288	42	5.7	42	86	1	298	24	16	21	38	1.92
890086--890288	84	2.4	84	92	1	336	23	15	20	40	1.90
893319--893352	16	2.1	16	89	10	52	44	2	2	50	1.32
901342--901388	21	2.2	21	96	0	85	51	8	4	36	1.52
901406--901949	22	24.5	22	86	3	748	48	10	0	40	1.43
906663--906709	5	9.4	5	97	0	67	38	6	21	34	1.79
907322--907351	3	10.0	3	100	0	60	33	0	0	66	0.92
908814--908843	2	15.0	2	100	0	60	50	0	0	50	1.00
908953--908983	15	2.1	15	93	0	53	29	0	6	64	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
909107--909142	17	2.1	18	89	5	56	55	0	0	44	0.99
910502--910570	35	2.0	35	91	5	113	52	13	5	28	1.63
912737--912798	31	2.0	31	90	6	99	27	6	29	37	1.82
915293--915407	29	3.9	29	81	2	131	20	42	25	12	1.86
915290--915407	58	2.0	60	88	3	177	19	41	26	12	1.87
915357--915510	30	5.1	30	87	2	211	24	46	18	11	1.81
916158--916201	21	2.1	21	91	0	70	29	0	15	54	1.42
916178--916231	28	1.9	28	96	0	99	29	0	12	57	1.36
919412--919498	11	7.6	11	70	20	54	40	0	14	44	1.46
919412--919499	21	4.4	20	64	20	58	40	0	14	44	1.46
919299--919668	119	3.1	119	92	4	583	39	0	13	46	1.48
919299--919668	179	2.1	175	89	6	568	39	0	13	46	1.48
919580--919684	25	4.0	25	70	13	84	36	0	14	48	1.50
919636--919683	14	3.6	14	81	16	66	33	0	16	50	1.46
919299--919668	60	6.2	60	88	6	560	39	0	13	46	1.48
921993--922068	30	2.5	31	77	16	86	50	10	1	38	1.45
922246--922285	21	1.9	21	100	0	80	57	15	0	27	1.38
922384--922455	38	2.0	37	86	13	105	48	9	0	41	1.36
922480--922544	28	2.3	29	82	10	82	46	15	1	36	1.55
922834--922869	11	3.2	11	84	7	54	36	19	22	22	1.95
923060--923125	33	2.0	33	93	0	114	15	19	37	27	1.92
923114--923149	10	3.6	10	100	0	72	11	19	50	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
923171--923255	29	2.9	29	82	0	107	15	30	37	16	1.90
923526--923597	20	3.5	20	86	5	90	45	9	25	19	1.80
923538--923599	20	2.9	22	90	7	92	48	9	25	16	1.76
923760--923790	15	2.1	15	93	0	53	54	0	0	45	0.99
925644--925833	93	2.0	94	89	2	292	45	21	16	16	1.86
928547--928590	16	2.7	17	82	10	65	36	27	4	31	1.77
936368--936447	36	2.2	36	97	2	151	43	15	12	28	1.82
939694--940443	109	6.8	110	88	2	1073	35	12	19	33	1.88
939694--940443	55	13.6	55	89	2	1073	35	12	19	33	1.88
942416--942461	21	2.2	21	92	0	74	13	21	15	50	1.78
947029--947397	55	6.7	55	92	2	571	36	12	20	31	1.89
947200--947291	28	3.3	28	61	3	69	34	11	20	32	1.89
947029--947397	109	3.3	109	91	2	560	36	12	20	31	1.89
947050--947397	164	2.1	166	91	2	540	36	12	19	31	1.88
948076--948189	28	4.2	28	80	15	116	30	7	17	44	1.75
959893--959931	20	2.0	20	89	0	60	28	10	0	61	1.28
960426--960479	15	3.7	14	80	11	56	1	22	3	72	1.10
964341--964380	21	1.9	21	94	0	71	30	15	7	47	1.72
964375--964473	33	3.0	33	94	1	164	32	7	15	45	1.73
964459--964513	13	4.2	13	75	13	58	34	3	12	49	1.59
964709--964765	21	2.7	21	88	0	87	19	24	26	29	1.98
964931--964986	15	3.6	15	79	9	67	32	12	12	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964950--964983	18	1.9	18	94	5	61	38	11	11	38	1.79
965077--965108	16	2.0	17	88	11	50	43	21	21	12	1.86
966484--966535	15	3.4	15	73	5	59	61	13	0	25	1.32
966485--966537	16	3.4	16	73	5	63	62	13	0	24	1.31
966483--966544	31	2.0	31	100	0	124	58	12	0	29	1.35
968582--968633	21	2.5	21	83	0	59	28	15	23	32	1.95
968789--968836	6	8.8	5	90	4	51	43	2	0	54	1.12
968797--968835	2	20.5	2	89	10	64	46	0	0	53	1.00
969953--970006	4	12.8	4	88	11	65	25	0	0	74	0.83
970031--970119	10	9.6	9	71	16	65	21	3	3	71	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15