Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008709.1 Hibiscus syriacus cultivar Beakdansim tig00111758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3030657

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1745 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2903537--2903609
33
2.0
37
82
15
91
57
0
1
41
1.07
2905065--2905141
3
26.7
3
80
17
92
66
0
1
32
1.00
2905065--2905147
22
3.9
22
77
13
84
66
0
2
31
1.05
2905066--2905147
28
2.9
29
78
14
89
67
0
2
30
1.04
2905747--2906188
113
3.9
112
91
0
679
27
19
15
37
1.92
2906543--2906598
22
2.6
22
91
2
87
37
14
14
33
1.86
2911573--2911629
8
6.7
9
84
9
75
1
15
0
82
0.75
2911574--2911633
16
3.6
16
86
4
84
1
16
0
81
0.77
2911583--2911639
16
3.6
15
86
11
78
1
17
0
80
0.79
2911584--2911639
8
7.1
7
86
11
58
1
17
0
80
0.80
2914590--2914615
12
2.2
12
100
0
52
57
15
7
19
1.62
2914593--2914629
18
1.9
19
89
10
58
56
18
8
16
1.64
2914653--2914706
13
3.9
14
83
13
67
57
7
18
16
1.62
2914653--2914706
7
7.7
7
82
15
67
57
7
18
16
1.62
2914655--2914706
21
2.5
21
96
0
95
55
7
19
17
1.65
2916706--2917087
147
2.7
143
80
11
419
47
6
6
39
1.55
2917330--2917369
15
2.7
15
96
0
71
57
0
2
40
1.12
2918499--2918585
3
29.3
3
78
15
92
66
2
1
29
1.11
2918502--2918587
23
3.8
24
80
14
110
67
2
1
29
1.10
2920386--2920518
47
2.9
45
83
6
169
33
21
6
39
1.79
2924416--2924589
36
4.9
36
93
0
296
41
14
16
27
1.88
2925862--2925899
14
2.7
14
84
11
51
21
10
28
39
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2932381--2932519
36
3.9
36
91
0
224
41
15
17
25
1.89
2943785--2943824
21
1.9
21
89
0
62
25
40
25
10
1.86
2950982--2951143
64
2.5
65
76
8
161
33
20
19
26
1.97
2953044--2953084
21
2.0
21
95
0
73
26
19
19
34
1.96
2953091--2953127
18
2.1
18
100
0
74
43
16
18
21
1.88
2954742--2954824
23
3.6
23
91
0
139
19
28
25
26
1.98
2961557--2961618
31
2.1
31
81
6
74
33
24
6
35
1.81
2962309--2962357
7
6.6
7
80
13
53
59
0
0
40
0.98
2962330--2962406
23
3.0
23
73
22
73
61
1
1
36
1.13
2962308--2962415
30
3.5
31
77
15
91
57
0
0
40
1.11
2962293--2962377
31
2.6
34
75
16
90
57
1
0
41
1.06
2962302--2962506
53
4.0
53
71
20
136
54
1
1
41
1.20
2964725--2964801
26
3.0
26
94
0
136
41
18
5
35
1.73
2967746--2967802
24
2.4
24
100
0
114
42
3
24
29
1.71
2969770--2969815
22
2.0
23
87
4
67
30
26
26
17
1.97
2969770--2969829
23
2.7
22
84
7
68
33
25
25
16
1.96
2970383--2970579
55
3.6
54
89
2
279
30
22
17
28
1.97
2976838--2976887
21
2.4
21
86
6
66
30
20
10
40
1.85
2977253--2977336
34
2.4
34
78
2
96
32
16
21
29
1.95
2977294--2977412
55
2.2
55
95
0
211
28
20
19
31
1.97
2980467--2980617
64
2.3
65
85
6
191
28
17
19
34
1.95
2984133--2984174
14
3.0
14
96
0
75
33
14
7
45
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2984133--2984187
28
2.0
28
81
0
65
36
16
5
41
1.71
2984663--2984700
18
2.1
18
90
0
58
34
18
21
26
1.96
2986597--2986645
21
2.3
20
76
10
53
36
14
2
46
1.56
2986984--2987022
20
2.0
20
84
0
51
7
30
0
61
1.24
2989364--2989441
35
2.3
34
84
8
97
52
1
0
46
1.08
2989373--2989424
26
1.9
27
84
7
70
51
1
0
46
1.12
2989609--2989666
28
2.1
28
84
9
75
48
5
1
44
1.35
2992982--2993378
202
2.0
199
93
6
685
34
22
17
25
1.96
2995281--2995314
17
2.0
17
88
0
50
41
0
8
50
1.34
2995554--2995604
2
25.5
2
100
0
102
50
0
0
49
1.00
2995811--2995858
2
24.0
2
100
0
96
50
0
0
50
1.00
3001718--3001746
15
1.9
15
100
0
58
17
27
34
20
1.95
3008571--3008605
15
2.3
15
100
0
70
14
22
34
28
1.93
3016988--3017040
21
2.5
21
87
0
70
50
20
7
20
1.72
3017001--3017046
21
2.2
21
84
0
56
60
13
6
19
1.54
3017553--3017810
82
3.1
81
80
9
256
32
17
19
30
1.95
3017569--3017734
41
4.0
41
87
3
244
36
15
18
28
1.92
3017569--3017810
123
2.0
123
82
6
294
32
16
19
30
1.95
3017878--3017921
23
2.0
22
81
4
52
11
13
20
54
1.69
3018222--3018956
247
3.0
248
92
3
1216
29
11
14
45
1.79
3025155--3025323
91
1.9
90
92
1
284
51
8
11
28
1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!