genome.fa.s8724.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008724.1 Hibiscus syriacus cultivar Beakdansim tig00111783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5289199

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  1  of  23  ( 2733 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4516--4693	85	2.1	85	89	0	266	32	18	20	28	1.96
7354--7430	20	3.8	22	70	16	67	28	28	19	23	1.98
14345--14432	18	4.6	18	76	15	86	31	29	19	19	1.96
14354--14432	22	3.9	21	75	14	85	30	29	18	21	1.97
15068--15116	20	2.5	20	100	0	98	30	28	16	24	1.96
20566--20611	20	2.4	19	81	3	56	28	13	32	26	1.93
20667--20731	20	3.2	20	84	4	78	27	7	35	29	1.85
27353--27412	30	2.0	30	96	0	111	46	3	8	41	1.50
27648--27700	3	17.7	3	100	0	106	67	0	0	32	0.91
31614--32167	81	6.9	81	85	1	673	29	20	12	37	1.90
38140--38185	22	2.1	22	95	0	83	47	13	2	36	1.54
39419--39465	20	2.4	20	86	10	62	36	27	0	36	1.57
40640--40697	30	1.9	30	82	6	73	29	15	10	44	1.79
58175--58230	23	2.4	23	100	0	112	46	3	30	19	1.67
62586--62635	26	1.9	26	95	0	91	20	32	16	32	1.94
63754--63811	30	1.9	30	86	6	82	22	12	5	60	1.51
66553--66803	84	3.0	84	80	7	255	37	21	16	25	1.94
66746--66858	60	1.9	60	86	0	163	38	18	20	23	1.94
67605--67845	34	6.8	36	83	10	266	42	3	7	46	1.48
67605--67866	35	7.3	35	82	11	259	43	3	7	45	1.49
67809--67833	13	1.9	13	100	0	50	48	0	8	44	1.32
67909--67937	2	15.0	2	92	7	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67967--67998	6	5.5	6	92	7	57	18	15	0	65	1.27
67967--67998	11	2.8	12	90	9	57	18	15	0	65	1.27
69223--69294	34	2.1	34	82	5	83	30	9	1	58	1.39
69331--69364	17	2.0	17	88	0	50	8	5	0	85	0.75
72605--72767	65	2.5	64	82	4	195	30	23	15	30	1.96
82885--83099	106	2.0	106	92	0	358	39	14	23	22	1.91
88003--88230	114	2.0	114	94	0	402	35	21	15	28	1.93
88928--89034	50	2.1	50	78	11	112	20	18	22	38	1.94
92884--93042	36	4.4	37	87	1	232	33	23	18	25	1.97
92884--93042	73	2.2	73	88	2	230	33	23	18	25	1.97
93405--93620	54	4.0	54	80	3	200	36	18	20	24	1.95
93572--94260	55	12.6	55	85	3	854	31	14	24	29	1.95
93619--94116	273	1.8	273	92	0	852	31	13	24	30	1.94
93409--94333	55	16.9	56	80	8	417	32	15	23	28	1.95
94593--94638	2	23.0	2	95	0	83	52	0	0	47	1.00
101917--101973	28	2.0	28	100	0	114	50	17	7	24	1.70
103230--103322	45	2.0	47	93	6	163	40	9	25	23	1.85
107279--107348	34	2.1	32	86	5	95	34	15	30	20	1.93
108208--108255	19	2.5	19	79	3	51	52	6	10	31	1.60
109696--109761	18	3.6	18	86	8	87	22	33	24	19	1.97
109704--109762	20	3.0	20	90	7	95	22	35	25	16	1.95
109704--109762	18	3.1	19	92	4	93	22	35	25	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111219--111269	25	2.0	25	96	0	93	47	15	5	31	1.70
113696--113825	47	3.0	42	83	10	124	40	7	18	33	1.79
113715--113840	47	2.8	45	87	7	175	40	7	20	30	1.81
114335--114378	14	3.1	14	80	0	52	20	25	9	45	1.80
127010--127070	23	2.9	21	87	7	79	21	34	26	18	1.96
127053--127090	20	1.9	20	88	0	58	26	36	26	10	1.89
129027--129062	17	2.1	17	89	0	54	13	0	22	63	1.29
135372--135416	22	2.0	22	82	4	54	51	11	13	24	1.73
136649--136712	30	2.1	30	85	0	83	34	28	18	18	1.95
137386--137597	64	3.3	63	80	5	214	29	18	20	32	1.96
138539--138573	14	2.5	14	100	0	70	25	22	5	45	1.74
140904--140967	30	2.1	30	85	0	83	34	28	18	18	1.95
141645--141886	64	3.8	64	85	5	287	28	19	19	32	1.96
141634--141915	128	2.2	127	80	8	297	29	18	19	32	1.96
141989--142022	13	2.6	13	95	0	59	20	20	0	58	1.39
144033--144146	51	2.2	51	82	3	131	34	8	11	45	1.71
144292--144321	10	3.0	10	100	0	60	20	20	10	50	1.76
149667--149696	15	2.0	15	93	0	51	40	3	20	36	1.69
150467--150519	21	2.5	21	81	0	61	32	5	13	49	1.65
151820--151859	19	2.1	19	85	0	53	67	7	15	10	1.41
153089--153148	9	6.7	9	74	12	52	63	3	1	31	1.20
153099--153142	13	3.1	14	83	9	54	65	0	2	31	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153629--153677	22	2.2	22	92	0	80	34	18	6	40	1.75
153637--153679	22	2.0	22	100	0	86	37	13	6	41	1.72
157474--157498	12	2.1	12	100	0	50	28	0	0	72	0.86
157487--157530	23	2.0	22	86	8	63	40	2	0	56	1.11
158098--158140	18	2.3	19	88	4	61	39	0	9	51	1.34
159444--159495	23	2.3	23	83	6	61	11	13	17	57	1.64
162332--162358	14	1.9	14	100	0	54	59	3	0	37	1.15
168018--168190	85	2.0	85	92	0	283	30	17	21	30	1.96
168018--168242	85	2.6	85	83	3	247	29	18	22	29	1.98
170853--170887	18	1.9	18	94	0	61	28	34	20	17	1.95
177738--177808	18	3.8	18	72	7	70	32	29	18	19	1.96
179132--179157	8	3.2	8	100	0	52	65	0	34	0	0.93
182329--182381	23	2.2	24	90	3	81	32	24	18	24	1.97
183092--183176	37	2.3	37	76	8	91	36	17	16	29	1.92
183888--183923	12	2.8	13	87	8	56	47	22	11	19	1.80
183939--183984	20	2.4	19	81	3	56	28	13	32	26	1.93
184040--184104	20	3.2	20	84	4	78	27	7	35	29	1.85
185781--185805	8	3.1	8	100	0	50	76	0	0	24	0.80
190799--190843	23	2.0	23	86	0	63	26	28	24	20	1.99
190822--191125	149	2.0	149	99	0	599	36	20	16	26	1.94
191673--191712	19	2.0	20	90	4	64	12	30	30	27	1.93
191604--191754	66	2.3	67	90	2	232	15	25	28	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192235--192271	19	1.9	20	88	5	58	62	0	35	2	1.10
197822--197866	23	2.0	23	82	8	56	28	28	22	20	1.98
197845--198148	149	2.0	149	97	1	574	36	20	15	26	1.93
198696--198732	19	2.0	19	89	5	58	10	27	35	27	1.90
198643--198779	66	2.1	65	90	2	211	15	24	27	33	1.95
199255--199291	19	1.9	20	88	5	58	62	0	35	2	1.10
200026--200085	30	2.0	30	96	0	111	46	3	8	41	1.50
200330--200373	3	14.7	3	100	0	88	68	0	0	31	0.90
203138--203185	2	24.0	2	100	0	96	50	0	0	50	1.00
203327--203353	2	13.5	2	100	0	54	51	0	0	48	1.00
204622--204664	21	2.0	21	95	0	77	34	18	16	30	1.93
208965--209006	21	2.0	20	82	13	50	45	4	9	40	1.58
213752--213819	31	2.2	30	84	7	84	42	5	17	33	1.74
214998--215036	20	2.0	20	84	0	51	35	2	25	35	1.70
216350--216502	65	2.4	64	82	7	186	30	19	16	33	1.94
222279--222358	21	3.5	22	75	14	74	25	22	21	31	1.98
225111--225168	28	2.1	28	86	0	80	31	22	13	32	1.93
226328--226404	39	2.0	39	81	0	91	31	18	24	25	1.97
227215--227267	2	26.5	2	100	0	106	50	0	0	49	1.00
227847--227902	18	3.1	18	79	5	58	30	0	1	67	1.01
262542--262600	28	2.1	28	96	0	109	50	20	11	16	1.76
264306--264376	32	2.2	32	78	7	74	38	28	15	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264403--264445	16	2.7	16	88	0	68	18	34	13	32	1.90
264697--264738	22	2.0	22	90	4	68	45	2	4	47	1.36
265203--265240	19	2.0	20	89	5	60	26	28	0	44	1.54
265354--265406	2	26.5	2	88	7	81	50	1	1	45	1.23
265858--265903	2	23.0	2	91	8	76	47	2	0	50	1.13
266249--266285	15	2.4	15	90	4	56	48	8	2	40	1.47
266431--266466	15	2.4	15	95	0	63	41	2	5	50	1.40
266392--266527	66	2.0	67	85	1	184	45	6	2	44	1.44
266432--266531	15	6.2	15	72	15	56	43	7	4	46	1.49
266635--266683	18	2.5	19	80	16	55	46	0	6	46	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23