genome.fa.s8724.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008724.1 Hibiscus syriacus cultivar Beakdansim tig00111783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5289199

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  14  of  23  ( 2733 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3137903--3137938	2	18.0	2	100	0	72	50	0	0	50	1.00
3140596--3140622	12	2.2	12	100	0	54	59	7	25	7	1.51
3142492--3142532	18	2.2	19	86	4	57	34	0	19	46	1.50
3145103--3145507	199	2.0	199	88	3	600	38	12	16	32	1.86
3145014--3145507	200	2.5	199	84	4	629	39	12	15	32	1.85
3146789--3146818	16	1.9	15	93	6	51	46	0	13	40	1.43
3149654--3149722	21	3.2	21	85	6	84	21	33	26	18	1.97
3149642--3149723	23	3.7	22	87	4	103	23	31	26	18	1.97
3153687--3153731	18	2.5	18	88	0	63	31	31	0	37	1.58
3155905--3155934	15	2.0	15	93	0	51	30	6	13	50	1.67
3156254--3156330	6	12.7	6	79	8	66	28	10	7	53	1.63
3156254--3156330	37	2.1	36	90	2	118	28	10	7	53	1.63
3157657--3157703	19	2.4	19	89	3	76	48	10	12	27	1.74
3159227--3159841	108	5.5	107	70	15	413	32	15	14	37	1.88
3158999--3159926	226	4.1	226	91	1	1398	32	16	14	37	1.88
3165551--3165595	3	15.3	3	95	4	83	68	0	0	31	0.89
3172376--3172480	44	2.4	44	87	1	149	34	20	16	29	1.94
3172949--3172986	13	3.0	13	80	3	51	36	13	5	44	1.66
3174679--3174712	12	2.7	13	86	9	52	44	8	5	41	1.60
3175056--3175203	65	2.3	64	81	3	163	31	20	14	33	1.93
3177690--3177746	18	3.0	17	75	22	51	29	10	10	49	1.71
3177973--3178021	20	2.5	20	86	0	71	38	12	20	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3178440--3178510	34	2.1	33	89	2	106	30	15	26	26	1.96
3184511--3184731	117	1.9	117	90	0	352	30	32	16	20	1.95
3185647--3185767	29	4.2	29	92	3	199	43	23	3	29	1.69
3185647--3185767	57	2.1	59	92	3	201	43	23	3	29	1.69
3190841--3190909	10	7.1	10	77	12	81	18	21	30	28	1.97
3190841--3190930	19	4.7	19	88	1	117	20	24	28	26	1.99
3190840--3190930	38	2.4	39	86	1	130	20	24	28	26	1.99
3190924--3190981	17	3.4	17	90	0	89	18	39	22	18	1.92
3190971--3191001	7	4.4	7	100	0	62	16	29	29	25	1.96
3198165--3198233	10	7.1	10	77	12	81	18	23	28	28	1.98
3198165--3198254	19	4.7	19	91	1	126	20	25	27	26	1.99
3198248--3198305	17	3.4	17	95	0	98	17	39	24	18	1.92
3202505--3202584	39	2.0	40	95	2	144	36	22	7	33	1.82
3203175--3203201	2	13.5	2	100	0	54	51	0	0	48	1.00
3205024--3205092	23	2.9	24	80	4	86	27	24	18	28	1.98
3205228--3205260	15	2.3	15	89	5	50	36	21	3	39	1.69
3211608--3211702	21	4.3	21	80	10	59	31	25	18	24	1.98
3211620--3211703	23	3.7	23	81	9	102	29	25	21	23	1.99
3212278--3212326	18	2.7	18	96	0	89	22	34	18	24	1.96
3217784--3217813	16	1.9	15	93	6	51	3	13	0	83	0.77
3219926--3221044	57	19.6	57	90	0	1702	33	18	11	36	1.87
3221466--3221516	20	2.5	20	96	0	93	25	29	11	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3221391--3221612	116	1.9	115	83	4	286	26	22	14	36	1.93
3230346--3230398	17	3.1	17	86	0	70	43	13	5	37	1.67
3230534--3231071	282	1.9	282	91	0	878	32	17	17	31	1.94
3236207--3236246	20	2.0	20	85	0	53	57	12	7	22	1.60
3236292--3236348	20	2.8	20	91	0	96	43	10	22	22	1.84
3236292--3236355	20	3.3	19	85	8	85	43	9	23	23	1.82
3237832--3237871	15	2.7	15	96	0	71	17	30	37	15	1.90
3242812--3242866	14	3.9	14	77	13	51	43	1	1	52	1.22
3242989--3243048	22	2.8	21	80	12	59	56	0	1	41	1.09
3252407--3252637	112	2.1	112	95	0	417	24	16	18	40	1.91
3254567--3254596	7	4.3	7	95	0	51	70	0	0	30	0.88
3255148--3255190	21	2.1	21	82	4	52	55	9	9	25	1.61
3259323--3259371	2	24.5	2	100	0	98	0	48	0	51	1.00
3264125--3264243	64	1.9	63	80	5	141	36	21	19	22	1.95
3264718--3265249	103	5.2	103	98	0	1001	25	12	25	37	1.90
3265261--3265328	23	3.0	23	84	0	91	17	25	26	30	1.97
3271961--3272493	103	5.2	103	96	0	978	25	12	25	37	1.90
3272503--3272570	23	3.0	23	82	0	82	17	26	25	30	1.97
3274059--3274112	19	2.7	19	82	5	72	37	27	18	16	1.93
3274005--3274181	70	2.5	70	85	0	228	35	23	16	24	1.95
3275136--3275272	65	2.1	64	82	6	161	30	18	22	28	1.97
3275247--3275290	18	2.4	18	100	0	88	15	22	34	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3275646--3275681	13	2.8	14	84	16	51	38	11	8	41	1.71
3275961--3276042	29	3.0	28	80	16	84	57	23	1	18	1.47
3278920--3279134	103	2.1	103	96	0	394	26	12	24	37	1.90
3279144--3279221	23	3.3	23	81	1	93	25	19	21	33	1.97
3283889--3283927	19	2.1	19	95	0	69	30	20	23	25	1.98
3283960--3284033	20	3.6	20	74	12	60	28	24	25	21	1.99
3284777--3284993	102	2.1	103	92	0	364	26	13	22	37	1.91
3285000--3285077	23	3.3	23	80	8	95	24	17	23	34	1.96
3286662--3286768	44	2.4	44	82	3	126	29	19	17	32	1.95
3292979--3293021	20	2.2	20	100	0	86	27	6	27	37	1.83
3292983--3293030	20	2.4	20	92	0	78	33	6	22	37	1.80
3309976--3310054	15	5.4	15	68	17	67	45	1	0	53	1.08
3309987--3310092	21	5.0	21	68	17	69	45	0	0	53	1.06
3309996--3310092	20	4.7	21	74	11	83	44	1	0	54	1.06
3309991--3310093	43	2.5	42	87	7	147	46	0	0	52	1.07
3310065--3310131	24	2.9	24	82	17	88	59	0	0	40	0.97
3310059--3310129	21	3.3	22	82	9	76	57	0	0	42	0.98
3310090--3310114	13	1.9	13	100	0	50	68	0	0	32	0.90
3321543--3321752	65	3.3	63	79	9	219	29	18	21	30	1.97
3324355--3324434	22	3.6	22	79	5	99	23	25	26	25	2.00
3324333--3324453	43	2.8	42	77	11	129	22	22	28	27	1.99
3324359--3324453	21	4.4	21	77	9	86	24	22	26	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3330229--3330277	19	2.7	17	84	9	53	26	20	28	24	1.99
3330249--3330458	65	3.2	64	80	12	241	26	18	24	31	1.97
3330771--3330822	25	2.1	25	96	0	95	57	5	0	36	1.23
3330853--3330938	45	1.9	44	86	6	120	46	8	6	38	1.61
3331208--3331237	2	15.0	2	100	0	60	50	0	0	50	1.00
3335438--3335720	111	2.5	111	89	2	426	42	13	10	33	1.78
3335692--3335736	15	3.1	15	70	23	51	48	4	6	40	1.49
3335563--3335886	136	2.3	137	85	4	427	41	12	10	34	1.78
3335823--3335886	29	2.2	29	94	0	110	45	10	9	34	1.72
3337474--3337538	29	2.2	30	78	8	71	66	4	6	23	1.33
3337481--3337537	15	3.7	15	76	6	53	70	5	1	22	1.17
3339384--3339423	21	2.0	20	85	14	55	27	22	20	30	1.98
3340039--3340118	23	3.6	23	73	17	69	30	26	21	22	1.99
3340066--3340126	23	2.7	23	78	0	68	34	24	22	18	1.96
3345865--3345922	21	2.8	21	100	0	116	36	20	18	24	1.95
3349183--3349266	23	3.7	23	76	10	84	33	26	19	21	1.97
3352581--3353407	413	2.0	413	98	0	1600	30	22	14	31	1.95
3357852--3357910	23	2.6	23	81	10	75	33	27	22	16	1.95
3359021--3359069	23	2.1	23	88	7	73	57	14	2	26	1.48
3368885--3368933	23	2.1	23	85	7	64	55	14	2	28	1.51
3381882--3381930	21	2.5	21	80	9	59	40	0	4	55	1.19
3393323--3393394	35	2.1	35	97	0	135	48	9	8	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3394123--3394166	16	2.6	17	85	7	63	45	0	2	52	1.13
3395078--3395130	21	2.4	23	75	12	58	54	7	0	37	1.29
3395356--3395411	20	2.6	22	86	13	73	46	8	12	32	1.73
3396691--3396717	12	2.2	12	100	0	54	7	40	0	51	1.30
3401506--3401543	19	2.0	19	100	0	76	26	15	15	42	1.87
3402493--3402539	16	2.9	16	90	0	76	48	17	17	17	1.81
3402998--3403142	32	4.5	32	82	3	166	42	14	14	28	1.85
3402998--3403148	64	2.4	64	83	0	185	42	14	13	29	1.84
3416281--3416344	21	3.0	21	81	4	65	25	35	23	15	1.94
3421110--3421182	38	1.9	38	94	0	128	28	10	30	30	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23