genome.fa.s8724.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008724.1 Hibiscus syriacus cultivar Beakdansim tig00111783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5289199

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  23  of  23  ( 2733 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5210936--5211011	25	3.0	25	85	14	104	22	1	0	76	0.86
5210936--5211001	13	5.1	13	89	10	100	22	1	0	75	0.88
5210938--5211016	32	2.5	32	86	10	101	21	1	0	77	0.84
5212191--5212228	19	2.0	20	85	15	53	18	10	0	71	1.14
5212416--5212511	43	2.2	43	98	0	183	44	7	10	37	1.66
5212416--5212487	24	3.2	24	64	18	64	43	8	12	36	1.73
5213148--5213182	3	11.3	3	93	6	61	37	0	0	62	0.95
5217406--5217463	19	3.1	18	78	7	62	81	1	12	5	0.94
5218920--5219149	85	2.7	85	88	0	354	33	21	18	26	1.96
5219620--5219659	3	13.3	3	100	0	80	35	0	0	65	0.93
5220283--5220340	30	1.9	30	92	0	98	18	10	10	60	1.57
5220282--5220397	30	3.9	28	74	16	74	21	8	9	60	1.54
5225216--5225255	2	20.0	2	100	0	80	50	0	0	50	1.00
5227916--5228006	42	2.2	42	100	0	182	14	19	42	23	1.88
5228030--5228112	29	2.9	27	85	8	112	24	28	30	16	1.97
5228175--5228210	11	3.2	11	84	7	54	22	22	19	36	1.95
5228396--5228433	9	4.2	9	83	10	51	31	0	2	65	1.06
5228520--5228577	27	2.1	27	84	12	75	32	1	15	50	1.55
5228607--5228684	35	2.1	38	81	9	90	47	0	10	42	1.37
5228760--5228809	21	2.4	22	93	6	86	30	0	16	54	1.42
5228985--5229087	30	3.4	29	78	15	95	40	1	9	47	1.47
5230357--5230403	24	2.0	24	86	0	67	38	2	2	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5231390--5231437	14	3.6	14	81	16	66	47	16	0	35	1.47
5231406--5232093	60	12.4	52	85	10	523	46	12	0	41	1.44
5231567--5232097	60	9.2	60	81	11	621	45	12	0	41	1.45
5231517--5231742	49	4.6	48	87	8	314	46	12	0	41	1.41
5231778--5231984	11	17.6	11	66	20	55	45	12	0	41	1.46
5231669--5232101	120	3.6	119	94	2	746	45	12	0	41	1.45
5231669--5232101	239	1.8	237	92	3	744	45	12	0	41	1.45
5234939--5234992	28	1.9	28	96	0	99	57	12	0	29	1.36
5234935--5234999	28	2.3	28	84	10	96	55	10	0	33	1.35
5234969--5235017	21	2.3	21	85	3	71	53	16	0	30	1.43
5235652--5235754	29	3.6	29	81	3	127	17	23	34	24	1.96
5235783--5235807	12	2.1	12	100	0	50	16	44	16	24	1.86
5235799--5235834	18	2.0	18	100	0	72	16	38	27	16	1.90
5236280--5236314	14	2.5	14	90	9	54	40	5	2	51	1.40
5236668--5236757	27	3.4	25	76	15	85	47	2	1	48	1.21
5236668--5236772	53	2.0	53	85	7	142	45	1	0	51	1.18
5236747--5236868	55	2.3	53	78	12	126	48	2	1	47	1.25
5241952--5241992	22	1.9	22	90	5	66	68	0	0	31	0.90
5248053--5248238	44	4.3	44	86	1	250	37	7	20	33	1.81
5248053--5248233	88	2.1	87	90	3	283	37	7	21	33	1.82
5248702--5248757	22	2.5	22	85	2	76	23	23	14	39	1.91
5250332--5250376	18	2.6	16	83	16	63	17	33	4	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5250328--5250388	18	3.5	16	80	14	59	19	39	3	37	1.68
5252117--5252220	32	3.2	32	91	2	156	29	23	12	34	1.91
5261043--5261092	20	2.5	20	83	0	64	36	20	26	18	1.95
5261130--5261181	20	2.6	21	85	11	74	30	28	15	25	1.96
5261697--5261761	19	3.4	19	80	2	67	44	24	18	12	1.84
5261757--5261927	39	4.6	38	77	10	163	13	21	21	43	1.87
5261757--5261927	19	9.1	19	83	10	190	13	21	21	43	1.87
5263983--5264049	21	3.2	21	66	6	55	23	35	20	19	1.95
5263961--5264049	42	2.1	42	81	8	101	23	35	20	20	1.95
5265402--5265437	14	2.6	14	95	0	63	30	0	25	44	1.54
5265616--5265733	19	6.7	19	66	19	76	13	23	20	42	1.88
5265620--5265713	33	2.8	33	98	0	179	12	24	19	43	1.85
5269380--5269416	14	2.6	14	86	0	56	48	21	0	29	1.50
5269780--5269830	20	2.5	20	93	0	84	33	23	23	19	1.97
5269860--5269932	14	4.5	15	74	22	60	13	20	20	45	1.85
5269856--5269920	18	3.8	18	78	15	75	13	21	20	44	1.86
5270039--5270075	14	2.6	14	86	0	56	48	21	0	29	1.50
5271934--5272000	19	3.5	19	83	4	89	37	23	23	14	1.93
5271989--5272046	14	3.9	14	79	16	71	48	25	17	8	1.75
5271973--5272051	32	2.4	33	95	2	142	46	24	18	10	1.80
5272058--5272153	19	5.6	17	72	21	78	11	19	22	45	1.82
5272080--5272137	14	3.9	14	79	16	71	8	17	25	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5272063--5272153	32	2.8	33	94	3	166	10	18	23	47	1.80
5272138--5272192	20	2.8	19	83	8	65	16	23	23	36	1.94
5272665--5272709	18	2.5	18	85	0	63	15	15	42	26	1.87
5274025--5274062	20	1.9	20	88	0	58	50	21	15	13	1.78
5274320--5274363	22	2.0	22	86	8	63	22	15	40	20	1.90
5274549--5274600	19	2.7	20	87	6	79	25	19	28	26	1.98
5274529--5274642	20	5.7	20	76	7	79	23	17	23	35	1.95
5274570--5274704	41	3.3	41	81	4	130	20	21	20	37	1.94
5274631--5274723	20	4.6	20	78	4	96	18	24	18	38	1.92
5274631--5274726	41	2.3	41	98	0	183	18	23	17	39	1.92
5279357--5279401	23	2.0	23	95	0	81	28	11	11	48	1.73
5279676--5279722	25	2.0	23	83	8	58	51	0	2	46	1.13
5280281--5280376	41	2.3	41	94	0	165	40	16	22	19	1.91
5280284--5280376	20	4.6	20	76	9	89	39	17	23	19	1.92
5280362--5280412	20	2.5	20	77	3	57	45	19	15	19	1.86
5280407--5280458	20	2.6	21	85	11	74	30	28	15	25	1.96
5280362--5280439	41	1.9	41	83	0	102	41	21	15	21	1.90
5280954--5281018	19	3.4	19	84	2	76	44	26	18	10	1.82
5281014--5281184	19	9.1	19	81	10	181	12	21	22	43	1.86
5281014--5281184	39	4.6	38	76	10	154	12	21	22	43	1.86
5283229--5283295	21	3.2	21	66	6	55	23	35	20	19	1.95
5283173--5283295	42	2.9	42	79	2	113	23	36	17	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5284646--5284681	14	2.6	14	95	0	63	30	0	25	44	1.54
5284860--5284977	19	6.7	19	66	19	76	13	23	20	42	1.88
5284864--5284957	33	2.8	33	98	0	179	12	24	19	43	1.85
5287240--5287264	12	2.1	12	100	0	50	0	28	0	72	0.86
5288612--5288648	14	2.6	14	86	0	56	48	21	0	29	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23

The End!