genome.fa.s8724.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008724.1 Hibiscus syriacus cultivar Beakdansim tig00111783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5289199

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  2  of  23  ( 2733 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266656--266723	2	34.5	2	79	8	77	50	0	1	48	1.10
271569--271598	14	2.1	14	93	0	51	70	6	6	16	1.31
272591--272652	19	3.3	19	95	0	115	41	16	16	25	1.88
272876--273073	107	1.9	107	93	0	342	32	14	17	35	1.89
283182--283221	20	2.0	20	95	0	71	52	15	7	25	1.68
290446--290484	11	3.5	11	86	6	53	56	7	5	30	1.49
293085--293139	3	18.3	3	86	0	74	34	1	1	61	1.17
294887--294919	17	2.1	17	88	11	52	51	0	0	48	1.00
296819--296886	25	2.8	24	82	4	91	38	14	0	47	1.45
300511--301408	122	7.4	121	80	4	895	34	22	15	28	1.94
300536--301407	241	3.6	241	81	5	902	34	22	15	28	1.94
300511--301373	363	2.4	364	81	4	972	34	22	14	28	1.94
303703--303757	16	3.6	16	72	22	64	29	1	9	60	1.38
303708--303770	29	2.2	29	97	0	117	28	3	9	58	1.45
303988--304038	23	2.2	23	96	0	93	13	27	15	43	1.85
304518--304566	17	2.8	18	88	11	68	20	4	0	75	0.96
304515--304572	18	3.4	16	82	15	64	20	6	0	72	1.07
318036--318107	30	2.4	30	83	2	90	34	4	20	40	1.72
319363--319673	80	3.9	80	90	0	444	29	26	21	22	1.99
329122--329164	21	2.2	20	87	8	61	30	20	23	25	1.99
329130--329181	21	2.5	21	93	0	86	21	25	28	25	1.99
329306--329350	18	2.5	19	76	20	51	26	4	8	60	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341241--341411	17	9.8	17	70	10	87	36	11	7	45	1.67
341266--341392	35	3.7	35	88	5	168	40	9	7	42	1.66
341431--341520	29	3.0	30	80	6	94	43	6	15	34	1.73
341988--342022	11	3.3	10	88	11	52	57	8	8	25	1.57
345337--345393	28	2.1	28	84	15	75	33	5	10	50	1.59
346033--346076	2	22.0	2	100	0	88	50	0	0	50	1.00
346300--346446	17	8.5	17	72	8	109	32	12	10	44	1.77
349961--350026	18	3.7	18	93	0	105	31	13	21	33	1.92
350534--350694	81	2.0	81	87	2	234	35	11	21	31	1.90
350536--350723	81	2.3	81	80	3	209	36	10	21	30	1.88
350718--351031	46	6.8	46	90	0	457	45	9	21	24	1.81
355830--356193	182	2.0	182	94	0	638	33	8	18	39	1.80
356163--356347	81	2.3	81	85	3	239	41	11	20	27	1.86
356301--356342	22	1.9	22	90	0	66	38	7	26	28	1.82
356337--356485	46	3.2	46	90	3	228	42	12	22	23	1.87
357188--357238	22	2.3	22	93	0	93	41	9	25	23	1.85
357689--357745	29	1.9	31	86	10	84	35	8	22	33	1.85
358827--358958	45	2.9	45	95	0	228	38	6	22	31	1.81
359373--359413	21	2.0	21	90	0	64	34	17	21	26	1.95
359725--359839	46	2.5	46	88	0	167	40	8	23	26	1.83
359725--359854	46	2.8	44	81	9	152	42	9	22	26	1.83
362379--362437	30	2.0	30	86	6	84	30	6	23	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367304--367378	20	3.7	20	75	10	80	26	21	28	24	1.99
367584--367787	36	5.9	34	80	5	219	23	17	22	37	1.94
367582--367792	34	6.0	36	78	5	234	23	17	21	37	1.93
367582--367792	70	3.0	70	87	0	305	23	17	21	37	1.93
369110--369465	125	3.0	117	83	9	459	24	27	17	30	1.97
375912--375942	16	1.9	16	93	0	53	16	6	0	77	0.97
377070--377112	22	2.0	22	85	0	59	27	25	11	34	1.91
381749--381791	19	2.3	19	84	8	52	46	4	6	41	1.51
381913--381943	13	2.5	13	94	5	55	80	0	12	6	0.89
381971--382001	15	2.1	15	93	0	53	61	0	9	29	1.28
383213--383344	34	3.9	33	74	14	117	48	6	1	43	1.39
383264--383381	36	3.3	36	82	8	109	45	4	1	48	1.32
383188--383381	104	1.9	103	87	7	286	45	5	2	46	1.38
383335--383445	56	2.0	56	94	3	199	39	3	5	51	1.42
383389--383472	37	2.2	38	93	2	143	42	4	4	47	1.45
384146--384637	83	5.8	84	87	2	621	25	17	21	34	1.96
384146--384637	167	2.9	166	85	5	628	25	17	21	34	1.96
390455--390597	5	27.8	5	70	21	68	73	0	4	20	1.06
390453--390588	13	10.9	13	66	22	60	73	0	5	20	1.07
390522--390559	13	2.8	14	96	4	69	81	0	5	13	0.85
390596--390626	15	2.1	15	93	0	53	61	0	9	29	1.28
391871--392162	36	8.3	35	80	12	228	42	6	2	48	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392126--392188	25	2.5	25	89	0	99	41	4	4	49	1.45
392093--392225	61	2.2	62	91	1	223	40	5	5	48	1.48
392024--392288	134	2.0	132	86	5	374	40	5	4	49	1.46
392151--392287	37	3.7	36	88	3	202	41	5	6	46	1.52
392151--392287	74	1.9	74	93	1	240	41	5	6	46	1.52
392057--392255	98	2.0	97	92	0	326	40	5	5	48	1.48
394040--394113	36	2.1	37	82	10	91	52	1	0	45	1.09
394491--394645	60	2.6	60	80	5	170	37	3	24	34	1.72
394703--394747	14	3.3	14	82	14	58	60	0	2	37	1.09
394733--394808	21	3.5	20	74	20	64	50	0	1	48	1.09
396211--396370	87	1.9	84	89	3	248	43	10	11	34	1.75
396522--396843	155	2.1	159	88	7	489	28	17	11	42	1.84
396680--397566	179	4.9	181	91	3	1447	27	17	13	41	1.87
396680--397829	359	3.3	358	89	6	1755	27	16	13	41	1.86
397394--397725	160	2.1	162	92	3	555	28	17	12	41	1.86
399711--399756	19	2.4	19	79	13	58	19	17	10	52	1.74
399678--400144	178	2.6	180	86	3	638	27	16	13	43	1.85
405354--405491	21	6.7	21	69	6	68	35	25	17	21	1.95
405459--405652	20	9.6	20	76	8	76	35	25	19	19	1.95
405455--405652	40	5.0	39	81	4	200	35	26	19	19	1.95
405459--405651	60	3.2	60	83	0	251	35	25	19	19	1.95
406111--406500	20	19.5	20	84	5	457	20	18	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412109--412250	51	2.7	53	68	22	127	38	15	9	37	1.79
413319--413349	16	1.9	16	100	0	62	38	12	19	29	1.89
413813--413856	19	2.3	19	100	0	88	59	0	0	40	0.98
413949--414015	21	3.2	22	67	23	54	29	0	25	44	1.54
413915--414113	42	4.6	42	75	14	170	26	0	27	46	1.53
413960--414066	21	5.2	20	69	25	55	26	0	29	43	1.55
413991--414071	28	2.9	28	73	10	76	24	0	28	46	1.53
415313--415371	23	2.6	23	91	0	91	37	20	18	23	1.94
416843--416875	16	2.1	16	88	5	50	69	0	3	27	1.03
417991--418030	19	2.3	19	87	12	59	70	2	0	27	1.01
454522--454650	67	1.9	67	85	0	177	26	13	27	32	1.94
459972--460052	32	2.5	32	82	4	92	33	9	18	38	1.84
463579--463617	20	1.9	21	84	5	53	23	2	12	61	1.43
467260--467300	2	21.0	2	95	5	75	51	0	0	48	1.00
470307--470345	19	2.0	20	90	9	64	74	0	5	20	1.01
485710--485755	23	2.0	23	86	0	65	82	0	13	4	0.81
487731--488134	151	2.7	152	94	0	693	38	13	14	33	1.86
487972--488459	233	2.1	234	89	1	737	32	17	17	31	1.94
488457--488544	37	2.4	37	88	1	122	37	22	17	22	1.94
488419--488724	116	2.6	115	89	2	459	33	23	19	22	1.97
488578--488659	37	2.2	38	84	2	112	39	20	19	20	1.93
490645--490671	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492410--492485	33	2.3	33	81	0	89	38	6	10	44	1.65
492453--492797	189	1.8	189	84	1	467	38	5	7	48	1.54
492772--492835	31	2.1	30	88	2	92	35	9	4	50	1.56
496267--496315	21	2.3	21	96	0	89	10	20	22	46	1.80
500464--500644	64	2.9	61	79	15	190	30	22	17	29	1.97
507174--507249	31	2.5	31	78	4	82	27	30	27	14	1.95
515844--515945	44	2.3	44	82	14	122	28	25	20	25	1.99
515863--515944	23	3.6	22	73	14	78	25	25	23	25	2.00
518661--518768	45	2.4	45	86	11	150	30	20	17	31	1.96
519781--519831	27	1.9	27	88	4	77	35	17	5	41	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23