genome.fa.s8736.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008736.1 Hibiscus syriacus cultivar Beakdansim tig00111810_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2478687

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  10  of  13  ( 1494 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1740141--1740218	42	1.9	40	82	15	97	47	0	5	47	1.24
1745459--1745689	116	2.0	115	85	4	308	41	10	11	36	1.77
1745885--1745966	41	2.1	39	82	11	96	31	35	10	21	1.89
1753932--1753971	21	2.0	21	85	5	55	30	22	5	42	1.75
1754091--1754219	59	2.2	59	90	0	195	28	26	17	27	1.98
1754901--1754964	29	2.2	29	85	2	83	32	23	6	37	1.80
1762466--1762532	31	2.2	31	86	0	89	35	10	17	35	1.85
1767925--1767957	9	3.5	10	88	12	52	0	12	0	87	0.53
1782905--1782945	20	2.0	20	85	9	55	70	2	2	24	1.11
1785117--1785280	84	1.9	85	86	3	233	31	21	18	28	1.97
1789607--1789694	37	2.4	36	83	9	106	46	0	9	44	1.35
1789613--1789694	36	2.2	39	86	6	116	46	0	9	43	1.36
1789722--1789873	79	1.9	79	98	0	295	32	23	9	34	1.86
1793326--1793359	15	2.3	15	100	0	68	20	14	52	11	1.73
1795774--1795798	12	2.1	12	100	0	50	56	0	24	20	1.43
1797659--1797779	60	2.0	60	100	0	242	45	11	8	34	1.70
1798100--1798147	22	2.2	22	85	14	64	52	2	2	43	1.24
1799694--1799778	42	2.0	42	100	0	170	18	9	30	41	1.82
1802785--1802847	26	2.4	26	81	7	65	28	23	19	28	1.98
1813729--1813969	41	5.9	41	75	12	192	29	15	22	31	1.95
1813735--1814045	81	3.8	81	86	5	373	29	16	22	31	1.96
1813912--1814044	41	3.3	40	68	17	112	28	18	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1815559--1815796	43	5.5	43	78	5	214	29	22	21	26	1.99
1817677--1817724	19	2.5	19	96	0	87	68	6	8	16	1.35
1819259--1819339	37	2.2	36	86	2	108	38	18	12	30	1.88
1819819--1819935	56	2.1	56	98	0	225	35	8	17	37	1.81
1822012--1822040	14	2.1	14	100	0	58	20	37	0	41	1.53
1829619--1829670	21	2.5	21	96	0	95	23	19	9	48	1.78
1829631--1829677	21	2.2	21	92	0	76	19	21	10	48	1.78
1832758--1832800	20	2.2	20	86	0	59	30	20	16	32	1.95
1840818--1840862	23	2.0	23	91	4	74	64	11	0	24	1.26
1840882--1840929	25	2.0	24	83	4	60	60	14	0	25	1.34
1845480--1845509	16	1.9	15	93	6	51	60	0	6	33	1.23
1846181--1846299	64	1.9	63	89	5	186	55	15	0	29	1.40
1846213--1846354	19	7.4	19	70	13	60	57	11	0	30	1.35
1846222--1846396	76	2.3	75	83	5	210	57	10	1	31	1.40
1852343--1852373	15	2.1	15	93	0	53	64	3	25	6	1.33
1854178--1854277	36	2.8	36	87	1	130	34	21	22	23	1.97
1854928--1854988	23	2.7	23	86	0	95	27	27	26	18	1.98
1855631--1855790	63	2.5	63	83	5	189	26	20	19	33	1.96
1861879--1861951	23	3.2	23	94	0	119	28	26	26	19	1.98
1862571--1862730	63	2.5	63	83	5	189	26	20	20	33	1.97
1863248--1863273	13	2.0	13	100	0	52	69	0	30	0	0.89
1865298--1865531	82	2.8	80	83	6	290	32	14	21	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1865258--1865538	82	3.4	81	80	5	287	33	14	20	32	1.93
1865258--1865571	82	3.8	82	79	6	258	32	14	21	32	1.92
1869921--1870004	19	4.3	19	77	7	62	65	1	2	30	1.13
1869936--1870090	59	2.6	58	73	14	138	64	2	1	30	1.18
1869882--1870042	21	7.4	21	67	18	53	67	2	3	26	1.20
1870100--1870207	2	54.5	2	88	5	121	56	0	1	40	1.16
1870282--1870312	2	15.5	2	100	0	62	51	0	0	48	1.00
1870758--1870859	34	2.8	37	83	8	138	28	13	16	41	1.87
1871392--1871669	83	3.3	83	83	4	335	23	20	24	31	1.98
1871857--1872388	106	5.0	106	89	0	807	23	17	23	35	1.96
1873324--1873374	22	2.3	22	93	0	84	25	11	25	37	1.90
1873979--1874039	8	7.5	8	81	15	72	0	13	4	81	0.83
1877433--1877468	18	1.9	19	88	5	56	72	0	19	8	1.10
1878746--1878797	18	3.1	16	78	13	50	61	0	1	36	1.07
1878773--1878803	2	15.5	2	100	0	62	51	0	0	48	1.00
1878988--1879016	2	14.5	2	100	0	58	51	0	0	48	1.00
1879075--1879113	2	20.5	2	89	10	64	53	0	0	46	1.00
1879558--1879660	37	2.8	37	82	10	131	27	13	14	44	1.83
1884878--1884970	41	2.3	39	83	7	107	32	17	18	32	1.94
1886501--1886734	36	6.5	36	80	1	263	38	18	11	30	1.87
1886501--1886773	108	2.5	107	85	1	332	39	18	11	30	1.86
1886522--1886763	72	3.4	71	78	2	198	39	18	11	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1886522--1886773	107	2.3	108	84	2	301	40	17	11	30	1.85
1887115--1887191	36	2.1	36	100	0	154	48	23	7	20	1.76
1889010--1889259	51	4.9	51	85	2	272	40	20	6	32	1.79
1889010--1889259	101	2.5	101	84	2	295	40	20	6	32	1.79
1889165--1889459	51	5.8	51	75	10	217	35	19	12	31	1.90
1889010--1889296	152	1.9	152	78	3	317	39	20	8	31	1.82
1889254--1889438	102	1.8	102	88	2	282	33	18	15	31	1.93
1889254--1889459	102	2.0	102	85	3	281	33	18	15	32	1.92
1891176--1891219	19	2.3	19	100	0	88	13	34	0	52	1.41
1891177--1891227	19	2.5	21	84	15	79	13	31	0	54	1.39
1891215--1891268	20	2.7	20	85	2	63	5	20	7	66	1.37
1892477--1892816	170	2.0	170	100	0	680	24	17	15	43	1.87
1893363--1893458	39	2.6	39	84	9	114	43	0	19	36	1.52
1894140--1894210	23	3.1	23	87	0	106	43	8	15	32	1.77
1894289--1894985	199	3.5	196	80	5	767	32	15	13	39	1.86
1895473--1897943	201	12.3	200	80	6	2782	30	17	13	39	1.88
1895473--1897943	402	6.2	401	95	0	4370	30	17	13	39	1.88
1897789--1898097	154	2.0	154	83	3	390	32	15	11	40	1.83
1898137--1898601	199	2.3	200	80	6	539	30	15	14	40	1.87
1899131--1899182	21	2.5	21	96	0	95	28	19	28	23	1.98
1899953--1899989	18	2.1	18	89	0	56	16	29	5	48	1.68
1901473--1902589	200	5.8	199	76	13	663	34	15	11	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1901865--1902575	200	3.7	190	83	6	853	35	14	11	38	1.83
1901645--1902589	364	2.5	376	83	8	1159	34	15	11	38	1.84
1901995--1902589	200	3.0	200	88	1	863	35	14	11	37	1.83
1902856--1902904	19	2.6	19	96	0	89	55	10	2	32	1.45
1904458--1904496	18	2.2	18	95	0	69	0	41	0	58	0.98
1904681--1904747	33	2.0	33	91	0	107	23	43	0	32	1.54
1904780--1904844	21	3.1	21	88	0	103	15	32	9	43	1.78
1909151--1909195	19	2.3	20	81	11	58	15	20	11	53	1.72
1914300--1914912	182	3.4	182	87	3	826	28	15	13	42	1.85
1915478--1915521	23	1.9	23	100	0	88	18	56	9	15	1.65
1917615--1917781	84	2.0	84	100	0	334	25	23	22	28	1.99
1917933--1917981	25	1.9	25	87	4	71	57	8	10	24	1.59
1918022--1918046	12	2.1	12	100	0	50	16	0	8	76	1.02
1919919--1920097	43	4.2	42	82	6	216	32	19	23	24	1.97
1920193--1920228	19	1.9	19	88	5	56	58	16	0	25	1.38
1926922--1926964	14	3.1	14	76	3	52	58	4	9	27	1.49
1928911--1928950	20	2.0	20	100	0	80	30	35	10	25	1.88
1930972--1931043	9	8.5	8	79	14	65	72	1	2	23	1.06
1930982--1931041	3	19.7	3	80	13	61	71	0	3	25	1.01
1931534--1931575	2	21.0	2	100	0	84	50	0	0	50	1.00
1932748--1932960	36	6.1	35	76	14	192	36	14	22	26	1.93
1932715--1932857	65	2.1	68	86	7	195	34	12	20	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1932813--1932952	35	4.0	35	87	4	210	37	15	23	22	1.93
1933427--1933626	109	1.9	108	86	4	287	24	20	23	32	1.98
1933544--1933695	67	2.3	67	89	2	234	26	18	23	31	1.97
1933611--1933911	108	2.8	108	86	3	412	24	16	22	35	1.95
1933436--1933802	176	2.1	175	89	1	556	24	17	23	34	1.96
1938611--1938722	3	35.0	3	76	18	54	62	2	3	31	1.26
1938666--1938695	2	15.5	2	93	6	53	53	0	0	46	1.00
1938611--1938728	14	8.3	14	70	18	66	61	2	4	31	1.28
1938643--1938720	11	7.1	11	71	18	56	58	2	2	35	1.25
1940229--1940268	14	2.7	15	88	7	55	60	17	7	15	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13