genome.fa.s8736.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008736.1 Hibiscus syriacus cultivar Beakdansim tig00111810_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2478687

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  11  of  13  ( 1494 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1941480--1941536	23	2.5	24	85	5	82	38	0	1	59	1.08
1941701--1941758	27	2.1	28	87	3	82	34	1	1	62	1.16
1941709--1941766	10	5.9	11	74	24	58	41	0	1	56	1.09
1942042--1942084	22	2.0	22	90	4	70	67	0	0	32	0.91
1944242--1944283	20	2.1	20	90	0	66	54	0	2	42	1.13
1948947--1949065	45	2.7	44	76	3	130	15	30	17	36	1.92
1952896--1953060	31	5.3	31	77	0	168	30	29	24	15	1.96
1952900--1953060	62	2.6	62	78	0	187	31	28	24	15	1.96
1970465--1970677	113	1.9	113	88	1	320	31	9	15	43	1.79
1973674--1973754	3	27.0	3	97	0	135	37	0	0	62	0.95
1973900--1973929	15	2.0	15	100	0	60	26	20	26	26	1.99
1977379--1977417	14	2.8	14	88	0	60	28	12	5	53	1.60
1982956--1983293	114	3.0	114	91	0	534	34	15	18	30	1.93
1984435--1984608	76	2.3	75	86	2	231	29	14	23	32	1.94
1985882--1985936	22	2.5	22	90	0	92	34	12	14	38	1.84
1986343--1986884	113	4.8	113	89	0	757	37	14	19	27	1.91
1986343--1986884	225	2.4	225	86	3	759	37	14	19	27	1.91
1986825--1986924	40	2.5	40	90	0	146	51	9	19	21	1.74
1986706--1987039	153	2.2	155	88	2	485	41	11	20	26	1.86
1986599--1987152	268	2.1	265	85	4	740	40	13	18	27	1.89
1986865--1987471	113	5.3	113	95	1	1054	38	15	18	27	1.91
1986487--1987265	381	2.1	378	87	2	1114	39	14	18	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1986864--1987568	113	6.2	113	91	4	664	38	15	19	26	1.92
1987726--1987788	3	21.0	3	87	12	94	33	0	0	66	0.92
1987755--1987800	21	2.2	21	84	0	56	47	0	0	52	1.00
2008600--2008641	20	2.1	20	95	0	75	50	11	7	30	1.66
2012303--2012342	21	1.9	21	85	10	55	35	10	2	52	1.48
2021554--2021685	66	2.0	66	100	0	264	39	27	7	25	1.83
2028561--2028616	18	3.1	18	81	0	76	28	17	28	25	1.98
2029827--2029886	23	2.5	24	91	2	104	65	18	11	5	1.43
2031181--2031228	23	2.1	23	88	0	69	35	12	18	33	1.89
2032179--2032243	23	2.8	23	90	0	94	38	18	7	35	1.80
2032999--2033052	23	2.5	20	75	18	54	42	18	1	37	1.61
2033014--2033076	23	2.7	23	90	0	90	38	19	6	36	1.77
2032204--2034408	406	5.3	408	93	6	3847	38	12	8	40	1.74
2033827--2033880	23	2.5	20	75	18	54	42	18	1	37	1.61
2033842--2033904	23	2.7	23	90	0	90	38	19	6	36	1.77
2032181--2034408	828	2.7	830	98	1	4267	38	12	8	39	1.74
2034219--2034257	20	2.0	20	89	0	60	48	10	15	25	1.76
2036860--2037704	183	4.7	184	95	2	1534	34	15	15	34	1.89
2036860--2037704	364	2.3	363	95	2	1524	34	15	15	34	1.89
2038436--2038480	19	2.4	19	92	0	72	57	8	2	31	1.41
2040252--2040317	33	2.0	33	87	0	96	24	45	1	28	1.62
2042543--2042588	19	2.3	20	86	13	69	17	17	10	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2042654--2043090	223	2.0	221	90	6	688	38	7	8	45	1.62
2045498--2045548	19	2.7	18	79	8	57	17	29	21	31	1.96
2045502--2045584	28	3.0	27	74	19	73	16	27	24	31	1.97
2045516--2045587	19	3.8	19	77	14	69	16	29	26	27	1.97
2045516--2045584	27	2.5	28	77	13	79	17	28	26	27	1.97
2045498--2045586	9	9.7	9	74	11	65	16	28	24	30	1.97
2045594--2045641	5	8.8	5	78	17	51	18	52	22	6	1.68
2045594--2045636	17	2.5	17	96	0	77	18	51	23	6	1.70
2045605--2045646	22	1.9	22	100	0	84	19	47	23	9	1.78
2052740--2052816	19	4.1	19	88	3	93	20	19	28	31	1.97
2052815--2052877	5	11.8	5	77	12	54	19	49	22	9	1.76
2052813--2052872	22	2.7	22	92	0	102	18	48	21	11	1.80
2052832--2052884	27	2.0	27	92	0	88	18	47	22	11	1.81
2052874--2052911	7	5.4	7	100	0	76	15	28	28	26	1.96
2054866--2055493	329	1.9	329	84	5	833	36	16	11	35	1.84
2056189--2056332	72	2.0	72	98	0	279	26	15	28	29	1.96
2057077--2057154	39	2.0	39	97	2	149	39	17	21	20	1.92
2062791--2062817	13	2.1	13	100	0	54	22	14	7	55	1.64
2063432--2063475	21	2.0	22	86	4	63	31	18	20	29	1.96
2064846--2065215	187	2.0	184	96	2	690	45	9	17	27	1.79
2071427--2071511	27	3.1	27	93	6	152	27	17	14	41	1.88
2071425--2071514	29	3.2	29	93	6	166	27	17	13	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2073845--2073893	2	25.5	2	91	8	84	48	0	0	51	1.00
2073845--2073893	23	2.1	23	96	0	89	48	0	0	51	1.00
2073845--2073899	8	7.6	7	84	9	58	47	0	0	52	1.00
2073883--2074183	152	2.0	153	82	10	368	46	5	5	41	1.52
2075499--2075539	19	2.2	19	95	0	73	39	12	31	17	1.86
2075647--2075751	3	35.0	3	79	14	74	59	2	0	38	1.13
2076104--2076802	122	5.7	121	81	9	794	26	19	14	40	1.89
2077181--2077265	22	3.9	22	84	3	91	35	11	14	38	1.82
2078197--2078237	18	2.3	18	86	0	55	53	4	7	34	1.50
2078571--2078625	23	2.3	24	81	9	60	9	16	0	74	1.06
2079113--2079158	19	2.5	19	96	3	85	21	10	19	47	1.80
2080277--2080328	26	2.0	26	100	0	104	30	34	7	26	1.85
2085921--2085953	15	2.2	15	94	0	57	48	0	21	30	1.50
2088992--2089038	22	2.1	22	96	0	85	55	8	2	34	1.42
2089196--2089286	31	3.0	31	95	3	159	34	6	16	42	1.74
2089485--2089526	21	2.0	21	95	0	75	23	21	28	26	1.99
2089555--2089594	20	1.9	21	85	10	55	37	37	10	15	1.80
2089810--2089879	34	2.1	32	89	5	104	32	15	30	21	1.94
2092752--2093028	151	1.8	144	80	12	324	46	5	6	41	1.51
2094416--2094493	5	16.0	5	75	24	78	64	1	0	34	1.02
2094417--2094490	3	26.0	3	75	24	72	64	1	0	33	1.02
2094417--2094485	8	8.4	8	79	17	79	65	1	0	33	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2094406--2094480	24	3.0	24	74	16	73	65	1	0	33	1.01
2096995--2097038	19	2.3	18	85	11	61	38	20	9	31	1.84
2096975--2097038	20	3.2	20	80	8	69	39	17	12	31	1.87
2101863--2101921	26	2.3	26	96	0	109	22	30	20	27	1.98
2102221--2102569	189	1.8	191	83	3	470	37	12	12	38	1.81
2103464--2103508	18	2.5	18	85	0	54	64	2	2	31	1.18
2107244--2107311	25	2.7	26	71	15	61	54	4	10	30	1.54
2109204--2109233	12	2.5	12	94	0	51	76	3	3	16	1.05
2117979--2118118	70	2.0	70	98	0	271	42	3	12	40	1.60
2119585--2119627	21	2.2	20	87	8	61	27	0	0	72	0.85
2123031--2123102	15	4.4	15	72	23	56	41	0	5	52	1.24
2123045--2123147	22	4.5	22	73	7	98	39	0	9	50	1.35
2123067--2123102	14	2.5	15	90	4	56	41	0	2	55	1.14
2123082--2123574	54	9.1	53	94	1	797	37	1	10	51	1.44
2123159--2123201	22	2.0	22	95	0	77	41	0	9	48	1.35
2123213--2123255	22	2.0	22	90	0	68	34	2	11	51	1.51
2123267--2123309	22	2.0	22	95	0	77	34	2	13	48	1.56
2123321--2123363	22	2.0	22	90	0	68	37	2	11	48	1.52
2123483--2123525	22	2.0	22	95	0	77	37	0	11	51	1.39
2124144--2124174	2	15.5	2	100	0	62	51	0	0	48	1.00
2124851--2124890	20	2.0	20	100	0	80	20	20	30	30	1.97
2127207--2127319	21	5.4	21	98	0	217	34	14	17	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2127765--2128210	54	8.3	54	92	0	676	31	14	17	36	1.89
2133586--2134033	54	8.3	54	88	0	628	32	14	16	36	1.89
2137130--2137176	20	2.2	21	88	7	69	55	0	8	36	1.31
2139728--2139771	20	2.2	20	88	8	63	38	11	29	20	1.87
2147307--2147343	14	2.6	14	91	0	56	70	8	2	18	1.25
2165547--2165594	24	2.0	24	84	4	62	39	8	8	43	1.65
2165864--2167678	88	20.8	88	93	1	2998	31	9	19	39	1.84
2170040--2170065	2	13.0	2	100	0	52	50	0	0	50	1.00
2173036--2173284	55	4.5	55	80	1	259	36	17	18	27	1.93
2173025--2173273	110	2.3	110	81	4	288	36	17	18	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13