genome.fa.s8736.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008736.1 Hibiscus syriacus cultivar Beakdansim tig00111810_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2478687

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  4  of  13  ( 1494 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595936--595992	29	1.9	30	85	7	80	52	7	5	35	1.51
599012--599050	19	2.1	19	85	0	51	28	12	15	43	1.83
599658--599713	16	3.5	16	78	9	60	46	26	14	12	1.80
600295--600396	46	2.2	46	82	3	116	43	19	14	22	1.88
600442--600535	32	2.9	32	88	0	143	34	32	12	20	1.90
601331--602110	5	156.4	5	98	0	1501	20	0	20	59	1.38
603714--603763	2	25.0	2	100	0	100	50	0	0	50	1.00
610898--610955	27	2.1	27	100	0	116	29	25	10	34	1.89
612049--612106	17	3.4	17	87	2	71	34	5	27	32	1.79
612066--612112	17	2.8	16	87	6	58	36	8	25	29	1.86
612468--612949	266	1.9	255	87	6	704	41	17	13	27	1.87
616548--616575	8	3.5	8	100	0	56	35	0	0	64	0.94
617028--617061	11	3.3	11	84	16	54	44	0	0	55	0.99
617019--617061	20	2.2	20	86	0	59	48	0	0	51	1.00
617188--617236	11	4.7	11	78	14	50	48	0	0	51	1.00
617175--617233	23	2.7	23	73	17	63	47	0	0	52	1.00
617866--618032	44	3.4	51	86	8	226	47	7	8	35	1.64
617955--618036	22	3.7	21	69	23	53	47	4	9	37	1.58
621854--621960	36	2.9	36	91	4	162	31	5	13	49	1.64
622076--622160	44	1.9	45	90	2	136	31	8	31	28	1.86
622073--622171	44	2.2	44	85	1	135	30	9	32	28	1.88
624124--624152	15	2.0	15	93	6	51	24	6	13	55	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634682--634747	32	2.1	32	94	0	114	42	4	4	48	1.44
635874--635942	12	5.8	12	75	5	68	34	13	4	47	1.62
635872--635919	23	2.1	22	88	3	69	37	14	4	43	1.65
636154--636271	2	61.5	2	67	22	58	45	3	5	45	1.42
642577--643142	281	2.0	281	99	0	1114	30	19	21	28	1.98
643793--643839	20	2.4	19	86	10	60	17	8	0	74	1.05
645333--645530	99	2.0	99	85	0	270	34	15	17	32	1.91
646401--647249	80	10.6	80	90	0	1320	32	24	20	23	1.98
649409--649442	15	2.2	16	89	5	52	2	29	0	67	1.05
649934--649958	13	1.9	13	100	0	50	48	0	16	36	1.46
650675--650814	65	2.2	65	94	0	244	38	15	15	31	1.88
658252--658280	15	1.9	15	100	0	58	31	27	6	34	1.83
661481--661671	97	2.0	97	93	1	294	42	13	15	27	1.85
667854--667884	16	1.9	16	100	0	62	25	9	25	38	1.86
667855--667891	16	2.3	16	90	0	56	27	8	24	40	1.83
679671--679698	2	14.0	2	100	0	56	50	0	0	50	1.00
682075--682111	17	2.1	18	90	5	58	43	18	5	32	1.73
682894--682941	18	2.5	20	77	19	57	50	2	0	47	1.12
683228--683280	21	2.5	21	81	6	72	20	26	18	33	1.96
683310--683464	20	7.7	20	85	4	159	30	26	18	24	1.98
683311--683484	60	2.9	60	77	5	188	31	25	19	24	1.98
683991--684097	40	3.0	34	74	15	106	38	23	24	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
684010--684085	20	3.8	20	96	0	134	39	23	22	14	1.91
684109--684162	14	3.5	14	75	22	54	11	22	20	46	1.82
684091--684161	33	2.2	33	81	0	79	19	21	21	38	1.94
685735--685826	42	2.2	42	88	1	141	20	15	42	21	1.89
685762--685822	21	2.9	21	73	9	70	21	13	42	22	1.87
686164--686202	20	2.0	20	84	0	51	30	28	12	28	1.93
686190--686276	20	4.4	20	85	1	104	35	22	25	16	1.94
686190--686276	40	2.2	40	87	2	122	35	22	25	16	1.94
686302--686398	19	5.6	19	67	22	79	13	18	20	47	1.82
686307--686398	33	2.8	33	91	0	157	13	17	20	48	1.80
686383--686426	20	2.2	20	84	4	54	18	25	18	38	1.92
686972--687019	18	2.7	18	93	0	87	14	12	45	27	1.81
688282--688339	20	2.9	20	89	0	80	46	22	15	15	1.83
688603--688646	22	2.0	22	95	0	79	18	15	45	20	1.85
688819--688887	21	3.3	21	74	11	70	20	15	23	40	1.91
688815--688910	41	2.3	41	89	0	147	21	17	21	38	1.93
688833--688907	20	3.7	20	75	10	71	21	18	24	36	1.95
688896--689010	21	5.5	21	95	1	196	22	23	15	38	1.92
688840--688970	41	3.2	41	83	5	131	22	20	19	36	1.95
688999--689030	16	2.0	16	100	0	64	18	18	25	37	1.94
689016--689068	21	2.5	20	79	8	70	33	18	26	20	1.96
702834--702870	18	2.1	18	100	0	74	21	24	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
702837--702876	18	2.2	18	90	0	62	27	22	17	32	1.96
704015--704178	45	3.6	45	80	3	161	35	8	17	38	1.81
704326--704669	58	5.9	58	82	8	380	36	6	13	43	1.70
704330--704672	175	2.0	174	83	5	442	36	6	13	43	1.70
704326--704667	117	2.9	116	81	11	369	36	6	13	43	1.70
704629--704744	43	2.7	43	90	2	178	43	2	8	44	1.48
710192--710505	39	7.7	39	77	12	242	36	6	13	43	1.69
710232--710331	49	2.1	48	82	1	119	43	6	14	37	1.69
710202--710370	88	1.9	88	84	2	223	37	6	14	41	1.71
710280--710505	80	2.9	78	83	6	276	36	6	12	44	1.69
711012--711060	19	2.5	19	86	3	62	34	26	12	26	1.92
711132--711187	22	2.5	22	91	2	85	32	25	12	30	1.92
711381--711470	20	4.6	20	69	13	69	25	16	27	30	1.97
714109--714227	60	2.0	57	95	4	211	30	21	15	32	1.94
715553--715604	24	2.1	26	89	7	81	53	17	13	15	1.72
719805--719859	18	3.2	17	78	16	60	20	10	41	27	1.85
721701--721752	21	2.5	21	87	3	70	38	17	25	19	1.93
721738--721815	41	1.9	41	89	0	120	38	23	15	23	1.92
721741--721834	20	4.7	20	80	7	91	32	25	17	24	1.96
722022--722065	22	2.0	22	95	0	79	20	45	15	18	1.85
722308--722351	20	2.2	20	87	0	61	11	18	20	50	1.77
723666--723710	18	2.5	18	77	0	54	28	44	15	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724237--724294	14	3.9	14	77	16	62	50	22	17	10	1.76
724221--724311	32	2.8	33	89	3	148	48	20	18	12	1.80
724185--724316	19	7.5	19	72	19	88	43	21	21	12	1.86
724328--724395	14	4.9	14	100	0	136	7	14	27	50	1.70
724384--724450	19	3.5	19	83	4	89	14	23	23	37	1.93
724396--724450	20	2.8	19	89	5	83	16	25	23	34	1.95
726444--726597	19	8.6	19	84	12	211	46	17	22	13	1.83
726478--726597	52	2.3	52	100	0	240	47	17	21	13	1.82
726616--726673	20	2.9	20	94	0	98	17	22	22	37	1.93
727736--727789	24	2.2	24	86	0	72	25	16	18	38	1.92
727964--727988	12	2.1	12	100	0	50	72	0	28	0	0.86
730276--730340	19	3.7	19	66	19	59	43	18	24	13	1.87
730336--730378	20	2.2	20	87	4	61	16	18	23	41	1.89
730364--730397	14	2.4	14	85	0	50	8	23	20	47	1.78
730520--730556	14	2.6	14	91	0	65	45	24	0	29	1.53
731944--732010	21	3.2	21	68	4	55	19	20	35	23	1.95
731944--732066	42	2.9	41	80	7	113	22	17	36	22	1.95
734074--734172	33	3.0	33	89	1	144	39	26	23	11	1.88
734050--734233	19	10.1	19	75	14	163	44	21	21	12	1.85
734144--734233	39	2.3	38	90	1	144	46	21	20	12	1.82
734229--734309	19	4.5	19	74	16	73	11	17	24	46	1.80
734827--734920	20	4.7	20	80	7	91	24	17	25	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734909--735001	20	4.5	21	78	4	100	17	24	18	39	1.91
734848--734982	41	3.3	41	84	4	148	20	20	21	37	1.94
734909--735001	41	2.3	41	100	0	186	17	24	18	39	1.91
735417--735460	19	2.2	20	84	8	54	47	34	2	15	1.58
736286--736342	4	14.8	4	75	17	50	71	1	3	22	1.10
736286--736342	16	3.7	15	75	25	64	71	1	3	22	1.10
736431--736485	27	2.0	27	85	7	74	49	5	1	43	1.36
736388--736760	39	9.6	39	82	12	355	42	7	4	45	1.53
736388--736760	79	4.8	78	80	14	362	42	7	4	45	1.53
739591--739642	22	2.3	23	83	12	72	34	19	21	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13