genome.fa.s8736.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008736.1 Hibiscus syriacus cultivar Beakdansim tig00111810_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2478687

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  6  of  13  ( 1494 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
937707--937900	35	5.5	34	78	10	171	37	0	12	49	1.45
937723--937846	46	2.8	45	91	4	191	37	0	12	50	1.40
937716--937830	8	13.2	8	76	16	65	37	0	11	51	1.38
937786--938124	60	5.6	60	82	8	377	40	1	11	46	1.50
937873--937963	19	4.6	19	68	26	64	36	0	14	49	1.43
937952--938144	14	15.1	13	73	20	124	44	3	8	44	1.51
937943--938035	37	2.6	37	86	8	122	45	1	11	41	1.48
937786--938144	112	3.1	111	78	13	250	40	1	10	46	1.50
937971--938047	17	4.6	16	67	27	52	46	0	9	44	1.35
937748--938072	46	7.0	46	71	18	115	39	0	11	47	1.46
938029--938073	21	2.1	22	84	12	58	37	2	8	51	1.46
938275--938313	17	2.3	17	86	0	51	38	0	2	58	1.12
939454--939482	14	2.1	14	100	0	58	13	20	13	51	1.75
939456--939491	14	2.6	14	90	0	54	16	22	11	50	1.77
939547--939580	14	2.4	14	90	0	50	50	0	0	50	1.00
940013--940071	31	1.9	31	89	0	91	40	8	10	40	1.69
940096--940138	22	2.0	22	95	0	77	48	13	2	34	1.56
940098--940146	22	2.2	22	85	3	62	53	14	2	30	1.52
940086--941420	54	24.6	54	67	21	332	52	14	0	32	1.44
940118--941453	32	46.7	32	72	19	769	52	14	0	32	1.44
940152--940200	22	2.2	22	85	3	62	55	12	0	32	1.37
940155--940309	84	1.9	82	92	5	260	52	15	0	31	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940434--940476	22	2.0	22	100	0	86	51	13	0	34	1.42
940651--940703	14	3.6	14	76	14	61	56	5	0	37	1.23
940808--940850	22	2.0	22	100	0	86	51	13	0	34	1.42
940810--940858	22	2.2	22	88	3	71	55	14	0	30	1.40
940938--940990	14	3.5	14	72	18	52	56	5	0	37	1.23
940365--941426	287	3.8	284	82	12	1127	52	14	0	32	1.44
940830--941453	116	5.5	116	81	12	749	52	13	0	33	1.44
941212--941254	22	2.0	22	100	0	86	51	13	0	34	1.42
941214--941262	22	2.2	22	88	3	71	55	14	0	30	1.40
941268--941342	22	3.2	22	75	14	69	56	16	0	28	1.41
941346--941388	22	2.0	22	100	0	86	51	13	0	34	1.42
941423--941550	15	8.5	15	76	20	124	52	2	0	45	1.13
941365--941481	32	3.5	33	87	7	155	49	8	0	41	1.33
941422--941552	54	2.5	52	88	3	199	52	2	0	45	1.13
942561--942607	16	3.0	16	84	9	53	59	10	0	29	1.31
942649--942753	30	3.4	30	85	2	129	49	10	0	39	1.44
942810--942923	41	2.9	37	75	18	106	45	13	0	40	1.49
942933--942983	21	2.3	23	90	9	81	56	13	0	29	1.38
943176--943261	44	1.9	45	88	6	131	45	13	1	39	1.52
943745--943835	29	3.1	29	81	6	105	24	35	25	15	1.94
949368--949407	2	20.0	2	100	0	80	50	0	0	50	1.00
950382--950429	23	2.1	23	96	0	87	64	8	0	27	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953523--953551	5	6.0	5	92	8	51	62	17	20	0	1.33
953523--953551	9	3.0	10	90	10	51	62	17	20	0	1.33
956069--956101	5	6.6	5	92	0	57	75	0	3	21	0.93
956066--956097	15	2.1	15	100	0	64	75	0	6	18	1.01
959700--959735	15	2.5	15	95	4	65	50	25	0	25	1.50
970135--970191	20	2.6	23	83	13	75	24	26	21	28	1.99
970135--970207	20	3.5	21	77	17	71	24	28	19	27	1.98
975895--975920	13	2.0	13	100	0	52	23	46	7	23	1.78
983886--983917	3	10.7	3	100	0	64	68	0	31	0	0.90
984994--985035	3	14.0	3	100	0	84	66	33	0	0	0.92
986826--986852	13	2.1	13	100	0	54	62	0	14	22	1.31
987535--987591	3	19.3	3	77	10	55	29	3	1	64	1.20
987519--987571	26	2.0	26	89	7	81	28	1	0	69	0.99
989118--989186	13	5.0	14	70	20	56	49	2	0	47	1.16
994291--994323	13	2.4	14	90	5	50	81	0	9	9	0.87
994284--994322	19	2.1	19	90	4	62	79	0	10	10	0.94
994693--994730	18	2.1	18	100	0	76	31	5	5	57	1.43
997068--997722	113	5.6	113	75	10	554	38	14	19	26	1.91
997300--997722	123	3.5	122	75	12	442	39	14	18	26	1.90
997069--997722	236	2.8	237	87	4	890	38	14	19	26	1.91
997688--997734	23	2.1	22	88	4	67	46	10	27	14	1.78
997708--997750	17	2.5	17	100	0	86	46	9	25	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
997930--997989	20	3.0	20	67	13	61	51	10	20	18	1.74
998232--998359	3	43.7	3	69	16	81	35	2	0	62	1.08
999721--999794	38	1.9	38	81	10	89	28	2	5	63	1.30
1000020--1000044	12	2.1	12	100	0	50	24	0	0	76	0.80
1005074--1005153	40	2.0	40	90	0	124	33	12	20	33	1.90
1015885--1015923	20	2.0	20	84	0	51	23	7	23	46	1.78
1016102--1016162	20	2.9	21	85	9	79	22	24	31	21	1.98
1023140--1023178	15	2.6	14	88	11	60	33	17	10	38	1.84
1024466--1024525	21	2.8	21	87	2	84	25	25	23	26	2.00
1027289--1027329	20	2.1	19	90	4	64	39	21	19	19	1.93
1027314--1027417	44	2.4	44	80	9	115	30	18	20	30	1.96
1035065--1035094	11	2.6	11	94	5	51	53	6	3	36	1.44
1036469--1036515	18	2.6	18	96	0	85	19	51	21	8	1.73
1036492--1036521	13	2.3	13	100	0	60	16	46	23	13	1.82
1038544--1038582	12	3.2	12	79	13	53	28	12	23	35	1.91
1038529--1038643	24	4.8	24	87	4	160	23	15	20	40	1.90
1040221--1040355	20	6.7	20	78	7	103	34	22	17	25	1.96
1040218--1040355	61	2.3	61	83	0	177	35	22	17	24	1.95
1040522--1040566	22	2.0	22	95	0	81	24	46	11	17	1.81
1040827--1040885	20	3.0	20	87	0	73	16	18	22	42	1.89
1042197--1042240	18	2.4	18	88	0	70	25	45	15	13	1.83
1042778--1042835	14	3.9	14	79	16	71	48	24	17	10	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1042762--1042840	32	2.4	33	95	2	142	46	22	18	11	1.81
1042847--1042962	19	6.7	18	77	18	122	13	20	21	43	1.86
1042871--1042926	14	3.6	14	74	21	58	10	16	23	50	1.76
1042852--1042945	33	2.8	33	96	0	170	12	19	21	46	1.82
1042928--1043002	20	3.8	19	82	8	71	16	22	22	38	1.92
1044834--1044872	14	2.8	14	84	7	53	35	0	17	46	1.49
1045007--1045043	19	1.9	19	88	0	56	51	16	21	10	1.74
1045074--1045116	20	2.2	20	95	0	77	20	23	16	39	1.92
1047488--1047604	19	6.7	19	75	18	128	43	19	22	14	1.87
1047488--1047587	33	3.1	32	89	4	155	43	19	22	16	1.88
1047615--1047671	14	3.7	14	75	20	60	8	24	22	43	1.81
1047600--1047689	33	2.7	33	94	0	153	13	22	21	43	1.87
1047629--1047689	19	3.5	19	72	21	69	11	22	21	44	1.84
1047793--1047829	14	2.6	14	91	0	65	45	24	0	29	1.53
1047902--1048654	378	2.0	375	98	1	1447	30	24	16	28	1.96
1049558--1049624	21	3.2	21	68	4	55	19	20	35	23	1.95
1049899--1050083	91	2.0	93	91	6	306	47	18	11	21	1.81
1051764--1051884	20	6.8	19	69	22	93	44	19	23	11	1.84
1051764--1051884	33	3.4	36	86	8	139	44	19	23	11	1.84
1051813--1051865	14	3.4	14	72	22	52	43	22	24	9	1.83
1051789--1051884	33	2.9	33	93	3	158	42	21	25	10	1.84
1052523--1052575	21	2.5	22	81	6	74	33	18	26	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1055860--1055977	60	1.9	61	83	6	150	38	12	3	44	1.59
1056851--1056910	23	2.5	24	91	2	95	16	43	23	16	1.87
1067058--1067097	14	2.7	14	84	7	53	32	2	0	65	1.06
1067021--1067090	23	2.9	23	75	12	59	27	5	0	67	1.13
1067082--1067123	2	21.5	2	83	13	52	42	4	0	52	1.22
1067231--1067288	31	1.9	30	89	6	91	24	1	0	74	0.92
1067229--1067281	26	2.1	26	85	3	72	24	1	0	73	0.93
1067231--1067343	28	3.8	30	73	12	92	23	3	3	69	1.20
1067401--1067437	19	1.9	19	88	0	56	13	8	0	78	0.96
1067480--1067518	19	2.1	19	90	9	62	20	0	0	79	0.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13