Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008736.1 Hibiscus syriacus cultivar Beakdansim tig00111810_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2478687

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1494 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2349502--2349754
103
2.4
104
87
1
391
24
20
16
38
1.93
2351036--2351094
6
10.2
6
81
17
63
0
18
0
81
0.69
2351037--2351103
23
2.8
24
80
19
86
0
17
0
82
0.68
2351036--2351106
33
2.2
32
87
5
97
0
18
0
81
0.69
2357808--2357867
29
2.1
28
82
11
70
60
6
8
25
1.50
2359058--2359117
3
20.3
3
77
16
63
60
1
1
36
1.17
2362507--2362870
181
2.0
182
99
0
721
33
15
17
32
1.92
2397412--2397612
101
2.0
100
81
5
235
26
17
16
39
1.90
2397647--2397684
4
9.2
4
91
2
58
23
5
0
71
1.07
2397849--2397883
13
2.6
14
90
4
54
22
14
2
60
1.48
2403052--2403382
99
3.4
99
82
7
413
33
15
9
41
1.79
2403802--2404334
139
3.8
139
88
0
735
36
16
20
26
1.94
2403802--2404334
277
1.9
279
87
1
784
36
16
20
26
1.94
2404608--2404670
3
21.3
3
96
3
119
68
0
0
31
0.90
2405603--2405639
16
2.3
17
81
13
51
21
0
5
72
1.04
2405673--2405921
104
2.4
104
93
1
410
26
16
16
40
1.90
2406684--2406844
64
2.5
65
85
7
195
34
18
21
26
1.96
2407336--2407370
18
1.9
18
88
11
54
54
5
17
22
1.64
2408270--2408586
151
2.1
150
92
3
523
27
17
20
34
1.95
2408554--2408598
23
2.0
23
90
0
72
22
26
26
24
2.00
2411734--2411894
64
2.5
65
86
7
204
33
18
21
26
1.96
2412386--2412420
18
1.9
18
88
11
54
54
5
17
22
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2413305--2413765
149
3.1
149
94
2
797
26
17
21
34
1.95
2413733--2413777
23
2.0
23
90
0
72
22
26
26
24
2.00
2414612--2414642
4
7.8
4
92
0
53
22
3
0
74
0.96
2414791--2414852
29
2.2
29
82
8
74
22
11
3
62
1.42
2418502--2418532
3
10.0
3
93
6
53
35
0
0
64
0.94
2424927--2425113
69
2.7
70
77
10
172
30
18
22
28
1.97
2433382--2433427
2
23.0
2
100
0
92
50
0
0
50
1.00
2433456--2433483
3
9.3
3
100
0
56
35
0
0
64
0.94
2435596--2435633
15
2.4
16
86
4
60
52
0
0
47
1.00
2436340--2436645
20
15.2
20
83
3
382
34
21
19
24
1.96
2443239--2443296
28
2.0
30
83
9
77
67
3
0
29
1.07
2447660--2447699
21
1.9
21
89
0
62
10
25
40
25
1.86
2451505--2451544
21
1.9
21
85
10
55
35
10
2
52
1.48
2453909--2453949
16
2.6
15
84
7
55
53
0
0
46
1.00
2453908--2453941
13
2.5
13
90
4
50
52
0
0
47
1.00
2458047--2458119
35
2.1
35
100
0
146
16
0
67
16
1.24
2458145--2458170
13
2.0
13
100
0
52
15
30
23
30
1.95
2458824--2458869
21
2.2
21
84
7
58
30
6
6
56
1.50
2459751--2459823
36
2.0
36
86
7
103
50
0
2
46
1.15
2459803--2459851
18
2.8
17
78
6
53
55
2
2
40
1.23
2461271--2461333
9
6.9
9
76
15
58
20
4
0
74
0.99
2461271--2461342
27
2.6
27
81
14
85
18
6
0
75
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2461497--2461567
30
2.3
32
78
11
76
19
5
5
69
1.30
2461561--2461593
14
2.4
14
94
0
57
21
3
0
75
0.93
2465128--2465358
64
3.6
64
98
0
444
35
22
13
28
1.92
2465366--2466097
121
6.0
121
89
0
1052
34
26
15
22
1.94
2465366--2466222
242
3.5
242
85
4
1101
34
26
15
22
1.95
2465380--2466227
363
2.3
372
85
5
1132
34
26
15
23
1.95
2466655--2466704
3
15.7
3
95
4
73
32
0
0
68
0.90
2468312--2468369
30
2.0
30
83
10
75
24
6
0
68
1.13
2468379--2468495
4
29.5
4
69
20
52
22
4
2
70
1.16
2468399--2468493
39
2.4
41
84
7
115
22
5
2
70
1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!