Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008737.1 Hibiscus syriacus cultivar Beakdansim tig00111812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2791265

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1580 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2773306--2773356
2
25.5
2
100
0
102
49
0
0
50
1.00
2774183--2774309
59
2.2
59
85
2
175
37
11
0
49
1.45
2774183--2774312
29
4.4
29
79
2
152
37
11
0
50
1.44
2774412--2774504
24
3.9
22
77
8
60
43
5
0
51
1.24
2774184--2774503
30
11.2
29
72
14
170
40
8
0
49
1.40
2774412--2774488
24
3.2
25
83
5
104
44
5
0
50
1.24
2774671--2774723
18
2.9
19
75
8
56
43
0
15
41
1.46
2774967--2775034
31
2.2
31
97
0
127
23
23
10
42
1.84
2775212--2775246
16
2.2
16
89
0
52
71
0
0
28
0.86
2775829--2775878
16
3.0
16
86
13
66
42
0
0
58
0.98
2776898--2776939
16
2.4
18
76
11
52
52
9
2
35
1.47
2780680--2780718
18
2.2
18
86
9
53
71
7
5
15
1.26
2782108--2782157
14
3.6
13
79
12
55
78
0
20
2
0.86
2782114--2782157
7
6.4
7
92
2
72
77
0
22
0
0.77
2782163--2782250
29
3.0
29
93
3
142
48
5
1
44
1.33
2782198--2782298
49
2.1
48
83
5
123
45
6
2
44
1.45
2782236--2782276
20
2.1
20
90
4
66
41
7
4
46
1.53
2782246--2782311
28
2.3
30
82
15
95
40
7
6
45
1.57
2782687--2783161
224
2.1
225
80
4
528
32
17
19
31
1.95
2783227--2783267
19
2.2
19
90
0
64
31
17
31
19
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!