genome.fa.s8737.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008737.1 Hibiscus syriacus cultivar Beakdansim tig00111812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2791265

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  9  of  14  ( 1580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1684110--1684301	18	10.8	19	66	22	80	48	3	3	45	1.34
1684376--1684429	11	5.5	11	75	24	57	38	0	33	27	1.57
1684372--1684478	19	5.6	19	81	6	108	41	0	28	28	1.63
1684379--1684473	39	2.5	39	82	5	104	43	1	28	27	1.62
1684665--1684808	2	75.5	2	80	11	169	45	0	4	50	1.21
1685451--1685520	2	34.0	2	91	5	113	50	1	1	47	1.19
1685608--1685655	14	3.4	14	85	0	69	47	31	0	20	1.50
1685608--1685659	7	7.4	7	86	0	59	48	30	0	21	1.51
1686024--1686060	15	2.4	15	95	4	65	51	5	2	40	1.39
1686141--1686180	21	1.9	21	89	0	62	47	30	0	22	1.52
1686256--1686291	18	2.0	18	94	0	63	41	11	16	30	1.83
1685487--1687336	528	3.5	528	84	8	2440	43	12	9	35	1.73
1686611--1686741	21	6.2	21	80	7	151	50	28	0	21	1.49
1686611--1686741	7	18.7	7	77	0	91	50	28	0	21	1.49
1686611--1686741	42	3.1	41	85	6	174	50	28	0	21	1.49
1687034--1687065	15	2.1	16	88	11	50	34	0	0	65	0.93
1687206--1687252	7	6.7	7	80	9	51	55	29	0	14	1.40
1687206--1687256	21	2.4	21	86	0	75	54	29	0	15	1.41
1687423--1687469	14	3.7	14	71	26	50	51	4	0	44	1.21
1687421--1687470	23	2.1	24	96	3	93	48	4	0	48	1.20
1687738--1687792	16	3.4	16	94	0	92	38	12	29	20	1.89
1694326--1694411	43	2.0	42	82	6	102	54	17	3	24	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1704059--1704774	359	2.0	359	93	0	1218	33	10	21	33	1.88
1712391--1712424	6	5.7	6	89	0	50	8	14	41	35	1.77
1712391--1712424	12	2.8	12	95	0	59	8	14	41	35	1.77
1712388--1712424	18	2.1	18	94	0	65	8	16	40	35	1.78
1712700--1712754	22	2.5	22	75	0	56	29	9	23	38	1.85
1721218--1721262	19	2.4	19	92	0	72	17	13	0	68	1.20
1721227--1721263	19	1.9	19	100	0	74	16	10	0	72	1.10
1723936--1724028	45	2.1	45	83	4	116	29	12	20	37	1.90
1729128--1729190	21	3.0	21	90	0	90	36	31	9	22	1.86
1742135--1742231	13	7.8	12	75	12	72	20	5	1	73	1.09
1742135--1742231	21	4.6	21	73	16	85	20	5	1	73	1.09
1742137--1742231	17	5.4	17	75	16	86	20	5	1	73	1.08
1742135--1742231	4	23.2	4	74	15	72	20	5	1	73	1.09
1746679--1747108	201	2.1	202	82	3	517	35	20	10	33	1.87
1749982--1750027	24	1.9	24	83	16	60	23	0	6	69	1.11
1752653--1752705	18	3.1	18	73	18	58	66	1	0	32	1.03
1762140--1762178	14	2.7	15	88	7	55	30	5	5	58	1.41
1772801--1772846	22	2.1	22	83	0	56	47	10	6	34	1.64
1774557--1774591	16	2.3	15	90	5	52	77	0	8	14	0.99
1780881--1780915	12	2.9	12	91	0	52	42	22	11	22	1.85
1791515--1791556	15	2.6	16	81	7	50	28	7	2	61	1.35
1793933--1793970	19	2.0	19	89	0	58	23	15	13	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1796660--1796811	45	3.4	45	79	5	155	34	9	15	40	1.79
1796971--1797133	59	2.8	58	84	1	227	34	10	12	42	1.77
1797170--1797289	39	3.1	39	81	3	143	36	5	13	45	1.65
1797216--1797582	97	3.8	94	82	4	376	38	6	12	41	1.69
1803011--1803094	26	3.3	25	68	14	64	23	9	8	58	1.57
1803008--1803133	51	2.5	51	92	1	198	23	9	9	57	1.60
1804235--1804601	183	2.0	183	99	0	725	34	15	21	28	1.94
1806547--1806668	64	1.9	64	93	0	208	36	25	19	18	1.94
1806743--1806883	35	4.0	35	77	10	144	31	19	20	28	1.97
1806747--1806882	71	1.9	71	96	0	254	30	19	20	28	1.97
1806743--1806864	35	3.5	35	79	10	158	32	18	19	28	1.96
1812227--1812273	23	2.0	23	91	0	76	40	25	12	21	1.89
1829562--1829641	20	4.0	20	91	1	133	33	20	18	27	1.96
1834422--1834462	21	2.0	21	100	0	82	24	24	21	29	1.99
1835217--1835281	21	3.0	21	75	16	60	27	13	21	36	1.92
1842798--1842868	19	3.7	19	100	0	142	30	30	16	21	1.95
1842836--1842978	65	2.2	64	85	6	191	30	23	19	27	1.98
1851600--1851651	19	2.7	19	100	0	104	30	30	17	21	1.96
1851619--1851753	65	2.1	64	87	4	191	30	22	18	28	1.97
1860355--1860514	65	2.5	63	83	7	205	31	22	18	28	1.97
1863230--1863611	187	2.0	191	97	2	727	30	12	24	32	1.92
1873049--1873113	2	32.5	2	100	0	130	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1873270--1873334	13	5.0	13	88	0	94	32	16	23	27	1.96
1877725--1877934	77	2.7	77	88	0	321	36	18	20	24	1.95
1880015--1880070	22	2.5	22	77	8	60	3	53	0	42	1.18
1881921--1881999	20	3.9	21	83	8	94	31	24	18	25	1.98
1881920--1881997	41	1.9	41	89	5	122	30	25	17	25	1.97
1889273--1889657	82	4.7	82	78	1	394	28	20	18	32	1.96
1889273--1889477	42	5.0	39	67	13	99	28	20	17	33	1.95
1889362--1889711	163	2.1	164	80	3	411	31	20	17	30	1.96
1897619--1897711	36	2.5	37	77	3	107	29	20	10	39	1.86
1901757--1901788	3	10.7	3	100	0	64	68	0	0	31	0.90
1903229--1903530	46	6.6	46	93	1	482	22	21	11	44	1.84
1903301--1903470	20	7.6	20	72	21	133	20	25	10	42	1.84
1903925--1903995	19	3.5	19	78	12	70	30	25	12	30	1.93
1904019--1904070	20	2.6	20	84	6	70	21	28	15	34	1.94
1907460--1907499	16	2.5	16	95	0	71	25	10	12	52	1.70
1907479--1907723	73	3.3	74	87	4	334	33	17	10	38	1.84
1907479--1907706	36	6.1	36	72	7	170	32	17	10	39	1.84
1907634--1908012	104	3.7	102	84	6	455	36	13	10	39	1.79
1907634--1908013	208	1.8	206	84	6	527	36	13	10	39	1.79
1913495--1913687	44	4.6	43	74	12	159	34	15	24	25	1.95
1913942--1913985	21	2.1	21	84	16	56	52	27	0	20	1.47
1919704--1919744	20	2.0	20	86	9	57	41	9	4	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1927492--1927551	21	3.0	20	83	9	68	38	23	31	6	1.81
1927793--1927848	24	2.3	24	93	0	103	37	16	16	30	1.90
1929914--1929974	30	2.0	30	87	0	86	4	18	52	24	1.65
1931966--1932060	42	2.3	41	78	5	100	32	13	26	27	1.94
1932061--1932183	42	3.0	41	76	7	158	32	17	26	24	1.96
1932061--1932214	83	1.9	83	92	0	263	32	16	25	25	1.96
1932061--1932211	41	3.7	41	75	7	144	33	16	25	24	1.96
1932263--1932456	41	4.8	41	88	3	277	34	13	21	30	1.92
1932263--1932488	41	5.5	42	83	7	259	34	13	19	31	1.91
1932263--1932488	123	1.8	123	83	7	298	34	13	19	31	1.91
1933510--1933563	18	3.0	18	80	0	72	22	42	14	20	1.88
1935263--1935310	21	2.3	21	81	0	51	41	20	33	4	1.72
1935709--1935909	43	4.7	43	80	4	203	37	25	16	20	1.93
1935722--1935909	85	2.2	86	83	0	234	39	25	15	19	1.91
1935890--1935921	14	2.4	13	94	5	55	46	31	12	9	1.73
1937238--1937278	21	2.0	21	95	0	73	34	21	7	36	1.82
1940036--1940089	28	1.9	28	92	0	90	57	1	33	7	1.37
1940043--1940148	34	3.1	34	94	0	176	60	2	31	5	1.34
1940088--1940148	19	3.4	19	69	17	67	59	3	31	6	1.39
1940187--1940234	8	6.1	8	97	2	89	25	0	0	75	0.81
1941412--1941447	17	2.1	18	94	5	65	30	0	2	66	1.06
1941616--1941721	4	24.8	4	74	17	56	24	7	0	67	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1941661--1941720	9	6.8	9	78	14	63	21	3	0	75	0.95
1941651--1941708	28	2.1	28	80	6	64	22	8	0	68	1.16
1941663--1941716	28	1.9	28	88	7	83	22	3	0	74	0.98
1941907--1941969	30	2.1	29	82	8	74	17	14	0	68	1.22
1941938--1941997	26	2.3	27	79	5	68	15	10	1	73	1.17
1941942--1941976	17	2.0	18	88	5	54	14	8	0	77	0.99
1941947--1941998	22	2.3	22	83	9	61	15	5	1	76	1.05
1945832--1946079	91	2.6	93	83	10	290	31	17	19	31	1.95
1947548--1947636	32	2.8	30	77	13	88	32	28	15	23	1.95
1947544--1947876	66	5.4	65	64	17	199	33	24	15	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14