genome.fa.s8737.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008737.1 Hibiscus syriacus cultivar Beakdansim tig00111812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2791265

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307091--307140	25	2.0	26	88	4	75	38	16	6	40	1.73
308003--308035	2	16.5	2	100	0	66	48	0	0	51	1.00
315285--315318	2	17.0	2	100	0	68	50	0	0	50	1.00
315609--315639	15	2.0	16	93	6	55	80	0	19	0	0.71
317907--318246	114	3.0	114	92	2	549	34	15	18	30	1.93
320552--320606	22	2.5	22	87	0	83	34	14	14	36	1.87
321012--321656	113	5.8	113	89	4	884	37	15	19	28	1.91
321012--321656	219	2.9	220	85	5	847	37	15	19	28	1.91
321016--321651	332	1.9	328	88	1	948	37	14	19	28	1.91
321631--321691	17	3.6	17	72	16	63	49	6	18	26	1.71
321603--321688	34	2.4	36	90	3	131	50	9	17	23	1.75
321488--321979	143	3.4	143	88	4	646	41	13	18	26	1.87
321740--322018	36	7.6	36	72	13	194	44	12	20	22	1.85
321886--322018	36	3.5	39	92	7	236	48	9	23	18	1.78
321920--321979	17	3.4	17	71	24	61	50	8	23	18	1.74
321743--322181	182	2.3	196	86	8	602	43	12	20	23	1.85
321898--321999	19	5.4	19	65	28	65	49	10	23	16	1.77
321917--321979	20	3.3	20	69	22	64	50	7	23	17	1.72
322117--322181	20	3.2	20	68	23	64	52	6	24	16	1.67
322084--322181	40	2.5	40	94	0	169	51	8	22	18	1.72
321925--322284	163	2.2	163	95	1	647	42	12	19	25	1.86
322183--322488	102	3.0	101	76	9	316	38	16	16	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324219--324270	22	2.3	23	83	3	61	42	0	1	55	1.10
325042--325119	35	2.2	35	81	0	93	47	25	0	26	1.52
325185--325247	7	9.0	7	79	6	65	47	26	0	25	1.52
325180--325244	21	3.1	21	82	4	78	49	26	0	24	1.51
326082--326126	20	2.2	20	100	0	90	37	4	4	53	1.41
326578--326655	35	2.2	35	81	0	93	47	25	0	26	1.52
326721--326783	7	9.0	7	79	6	65	47	26	0	25	1.52
326716--326780	21	3.1	21	82	4	78	49	26	0	24	1.51
329331--329386	10	5.7	10	78	17	64	16	17	25	41	1.89
329330--329391	20	3.2	20	93	2	99	14	19	27	38	1.90
329420--329494	29	2.6	29	86	0	96	21	9	26	42	1.83
336568--336599	13	2.5	13	94	0	55	15	46	21	15	1.83
336618--336714	29	3.3	29	83	0	95	22	6	25	45	1.76
339200--339289	24	3.8	23	83	4	99	26	25	20	27	1.99
339686--339751	20	3.2	20	75	8	69	45	10	10	33	1.73
339687--339785	41	2.4	41	85	8	139	37	12	13	37	1.81
339687--339784	20	4.8	20	67	20	58	37	12	13	36	1.82
339770--339831	27	2.4	26	89	7	92	37	16	17	29	1.92
340354--340437	2	42.0	2	100	0	168	50	0	0	50	1.00
344305--344423	32	3.8	31	82	3	139	18	25	27	28	1.98
344308--344443	63	2.1	64	84	1	175	17	26	27	28	1.98
345867--345979	60	1.9	60	85	3	156	32	22	3	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345901--346013	60	1.9	60	83	3	147	31	24	7	36	1.83
346816--346841	2	13.0	2	100	0	52	50	0	0	50	1.00
347155--347179	7	3.6	7	100	0	50	76	12	0	12	1.04
348538--348626	42	2.1	42	85	0	115	21	44	14	19	1.86
348678--349406	114	6.4	114	97	0	1352	24	44	13	18	1.85
349212--349442	36	6.2	36	73	9	169	24	43	11	19	1.85
349345--349409	21	3.4	21	62	24	52	23	44	10	21	1.83
350476--350508	17	2.0	17	88	5	50	45	3	0	51	1.16
352276--352310	2	18.0	2	88	5	54	45	2	0	51	1.16
352501--352534	17	2.0	17	88	0	50	41	0	5	52	1.25
356414--356452	20	2.0	20	89	0	60	33	23	10	33	1.88
360143--360253	44	2.5	44	85	0	150	34	26	20	18	1.96
360143--360245	23	4.7	21	72	8	80	33	27	20	18	1.96
368038--368102	26	2.5	26	89	0	103	15	15	30	38	1.88
368684--368730	18	2.7	17	86	3	67	27	29	8	34	1.87
371316--371356	21	1.9	22	85	5	57	26	19	14	39	1.90
372079--372165	3	28.0	3	77	11	68	40	0	0	59	0.97
372077--372165	21	4.4	19	80	9	88	40	0	0	59	0.97
372098--372172	34	2.2	35	83	9	102	40	0	0	60	0.97
372100--372172	20	3.6	20	84	14	87	38	0	0	61	0.96
372317--372386	32	2.2	33	94	5	126	15	48	21	14	1.80
373437--373466	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374386--374425	2	20.5	2	94	5	73	47	0	0	52	1.00
374384--374450	21	3.2	20	79	10	73	40	1	0	58	1.07
379707--379779	17	4.2	17	81	15	78	79	1	17	1	0.88
379707--379778	11	6.3	11	78	16	67	79	1	18	1	0.88
379707--379780	24	3.1	23	80	14	80	79	1	17	1	0.87
384543--384619	22	3.5	22	90	0	127	36	11	11	40	1.78
385134--385462	167	2.0	168	92	2	545	35	13	11	38	1.82
385464--386618	76	15.2	76	96	0	2139	24	19	21	34	1.96
386596--386640	20	2.2	20	96	0	81	15	26	22	35	1.94
386616--386703	45	2.0	45	93	0	149	21	22	19	36	1.95
386837--386913	3	25.0	3	81	5	91	38	0	0	61	0.96
386837--386920	21	4.0	21	84	6	109	40	0	0	59	0.97
388012--388086	29	2.6	27	78	19	73	30	9	1	58	1.38
389228--389252	10	2.5	10	100	0	50	68	8	0	24	1.16
390186--390240	18	2.9	18	75	8	56	20	45	16	18	1.86
391668--391720	26	2.0	26	85	0	70	35	16	20	26	1.94
392694--392805	24	4.7	24	83	6	129	25	15	17	41	1.88
397078--397108	16	1.9	16	93	0	53	9	9	3	77	1.10
396952--397160	104	2.0	103	95	0	373	21	14	9	54	1.68
398970--399011	20	2.1	21	91	8	70	16	14	9	59	1.60
406156--406207	21	2.5	21	84	12	63	82	0	11	5	0.82
407593--408095	134	3.8	133	78	4	521	32	18	19	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407589--408098	265	1.9	265	85	0	707	32	18	19	30	1.95
408308--408342	2	17.5	2	100	0	70	48	0	0	51	1.00
412145--412279	42	3.4	40	75	10	118	28	5	11	54	1.58
415291--415335	20	2.2	20	96	0	81	22	15	8	53	1.69
418993--419031	5	8.0	5	82	5	53	76	0	5	17	0.96
419005--419065	3	20.7	3	77	15	56	72	1	1	24	1.03
420291--420347	12	4.7	12	72	12	53	66	1	0	31	1.02
420287--420351	20	3.2	20	80	10	69	67	1	0	30	1.00
420293--420366	37	2.0	36	82	12	89	63	2	0	33	1.09
420371--420625	39	7.1	38	75	11	193	45	6	4	43	1.50
420350--420725	37	10.5	35	73	12	234	45	7	3	43	1.50
421126--421373	84	3.0	82	84	4	325	25	19	22	32	1.97
427344--427423	2	41.5	2	80	12	87	46	2	1	50	1.23
427431--427461	16	1.9	16	93	0	53	41	12	6	38	1.69
427449--427490	22	1.9	22	95	0	75	50	11	7	30	1.66
427578--427606	2	15.0	2	92	7	51	51	0	0	48	1.00
427944--427995	2	26.5	2	96	3	97	50	0	0	50	1.00
428280--428310	9	3.4	9	95	0	53	51	0	0	48	1.00
432331--432416	44	2.0	44	88	4	129	29	20	8	41	1.81
432521--432602	40	2.0	40	95	0	146	35	26	15	21	1.94
434763--434803	16	2.5	17	88	4	57	2	9	43	43	1.50
434763--434810	17	2.9	17	87	3	62	2	8	43	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435122--435209	41	2.1	42	80	2	97	36	18	17	28	1.93
435122--435224	42	2.5	41	79	1	116	34	18	20	26	1.95
435230--435347	59	2.0	60	90	5	186	32	16	25	25	1.97
435429--436126	149	4.7	147	84	4	828	38	11	16	33	1.84
435429--436116	74	9.2	73	86	3	795	38	11	17	33	1.85
435994--436228	112	2.1	112	82	1	283	37	12	16	34	1.86
445202--445264	33	1.9	32	87	9	92	26	7	12	52	1.67
450102--450127	2	13.0	2	100	0	52	50	0	0	50	1.00
456940--457012	39	1.9	36	81	13	85	52	2	0	45	1.15
457007--457054	14	3.2	16	75	19	50	41	2	0	56	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14