genome.fa.s8737.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008737.1 Hibiscus syriacus cultivar Beakdansim tig00111812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2791265

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457022--457061	14	2.9	14	88	0	62	32	2	0	65	1.06
457132--457216	24	3.6	24	71	17	70	47	0	3	49	1.18
457509--457575	30	2.2	30	83	0	80	37	11	7	43	1.70
459737--459792	24	2.2	25	87	6	78	50	0	0	50	1.00
470691--470882	99	1.9	99	98	0	375	28	18	11	41	1.86
474141--474177	20	1.9	19	89	10	58	51	13	16	18	1.76
475205--475250	18	2.6	18	74	16	51	71	4	2	21	1.14
477138--477219	33	2.4	34	92	8	132	28	8	19	43	1.80
477279--477699	36	12.1	36	77	10	410	38	13	19	28	1.89
477348--477699	100	3.4	101	83	4	384	38	13	19	28	1.89
477550--477699	70	2.1	72	90	3	232	36	14	21	28	1.92
477996--478163	61	2.8	61	83	1	212	31	12	20	35	1.90
479447--479520	14	5.4	12	76	20	58	1	14	4	79	0.94
479434--479519	40	2.1	40	82	8	102	2	17	3	76	1.03
479447--479523	31	2.6	29	75	16	77	1	14	5	79	0.97
479430--479520	28	3.2	28	71	13	80	2	17	3	76	1.02
484471--484523	17	3.1	17	75	8	54	73	3	1	20	1.08
489611--489655	18	2.5	17	82	10	54	44	2	13	40	1.56
492531--492574	23	1.9	23	90	0	70	18	22	22	36	1.95
494767--494853	43	2.0	43	86	0	120	22	25	5	45	1.74
495299--495363	13	5.0	13	92	0	94	29	23	15	32	1.95
495368--495548	85	2.1	85	92	0	308	30	18	18	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495384--495585	85	2.4	84	88	5	282	33	17	17	32	1.93
495607--495641	2	17.5	2	93	0	61	45	0	2	51	1.16
497241--497340	39	2.6	39	95	0	182	0	40	8	52	1.31
497264--497327	19	3.3	19	65	4	56	0	37	12	50	1.41
501608--501643	18	2.0	18	94	0	63	52	2	11	33	1.51
504537--504586	24	2.1	24	88	7	75	60	12	2	26	1.43
514277--514312	16	2.3	15	86	9	54	69	0	13	16	1.19
514787--514836	24	2.1	24	85	7	66	60	16	2	22	1.46
520675--521036	178	2.0	180	97	2	683	29	26	22	21	1.99
526136--526190	17	3.2	17	69	23	51	58	5	16	20	1.58
526124--526190	35	1.9	35	90	0	107	58	4	16	20	1.56
532832--534032	595	2.0	598	99	0	2363	53	10	13	22	1.71
535090--535191	13	8.4	11	67	18	51	44	5	0	49	1.33
535028--535280	39	6.6	39	86	6	329	44	5	1	47	1.36
535028--535289	76	3.4	76	84	4	330	44	6	1	48	1.37
535465--535563	31	3.2	31	86	0	144	55	8	14	22	1.65
543679--543724	23	2.0	23	100	0	92	47	4	21	26	1.69
545673--545837	21	7.7	21	75	6	152	19	21	25	33	1.97
550818--550862	19	2.4	19	100	0	90	26	13	35	24	1.92
551481--551526	2	23.5	2	95	4	85	50	0	0	50	1.00
555195--555220	3	8.7	3	100	0	52	34	0	30	34	1.58
556749--556803	24	2.1	27	87	12	80	20	5	12	61	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556769--556820	25	2.1	24	85	3	68	15	5	17	61	1.52
557253--557617	131	2.8	131	87	0	507	30	12	17	39	1.86
567656--567705	8	6.1	8	74	21	50	76	0	14	10	1.03
567648--567721	26	2.9	25	78	13	69	74	0	14	10	1.07
568923--569391	133	3.5	133	87	0	634	30	23	17	28	1.97
569815--569899	36	2.4	35	73	7	91	28	41	9	21	1.84
570613--570831	106	2.0	108	80	11	245	21	14	15	48	1.80
571748--571960	108	2.0	108	90	1	338	32	9	19	38	1.85
575669--575703	13	2.8	13	91	4	54	71	0	0	28	0.86
575665--575721	30	1.9	30	92	0	96	71	1	0	26	0.95
575682--575722	17	2.3	18	91	4	66	70	4	0	24	1.06
575792--575846	16	3.4	16	80	14	76	69	7	0	23	1.14
575787--575863	33	2.3	33	100	0	154	67	5	0	27	1.12
575632--575856	114	2.0	109	84	7	292	57	9	4	28	1.48
576971--576997	13	2.1	13	100	0	54	22	25	14	37	1.93
585115--585462	174	2.0	174	100	0	696	49	8	9	33	1.64
585492--585537	19	2.5	20	75	13	53	34	0	2	63	1.07
586948--587317	131	2.8	130	84	4	483	39	15	11	33	1.83
590487--590532	14	2.9	16	84	12	51	47	0	0	52	1.00
590521--590559	15	2.5	16	91	4	62	66	0	0	33	0.92
598037--598119	22	3.8	22	98	1	159	50	0	0	49	1.00
600142--600191	18	2.8	18	78	21	61	64	2	0	34	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602618--602696	14	5.9	14	76	16	87	12	13	16	56	1.66
602615--602681	24	2.8	24	86	4	82	13	13	14	58	1.64
602618--602696	28	3.0	26	81	14	99	12	13	16	56	1.66
602615--602696	38	2.2	38	88	4	121	13	13	15	57	1.66
603469--603515	24	2.0	24	86	0	67	51	0	2	46	1.13
604527--604578	24	2.2	24	82	6	61	55	1	3	38	1.29
605146--605192	22	2.1	22	84	0	58	4	10	25	59	1.49
608133--608158	3	8.7	3	100	0	52	0	34	0	65	0.93
616692--616716	6	4.2	6	100	0	50	84	0	0	16	0.63
617454--617498	17	2.6	18	74	22	51	55	4	0	40	1.20
617546--617571	2	13.0	2	100	0	52	50	0	0	50	1.00
618088--618130	22	2.0	22	85	0	59	9	11	23	55	1.64
620216--620697	170	2.8	170	78	3	441	29	18	17	34	1.94
620632--620746	60	1.9	60	89	0	176	29	16	18	35	1.93
621950--621982	15	2.1	16	94	5	59	78	0	0	21	0.75
625068--625102	14	2.5	14	85	0	52	25	25	5	42	1.77
626820--626858	21	1.9	20	85	15	53	38	7	38	15	1.76
629328--629381	22	2.5	22	84	6	65	25	16	20	37	1.93
645634--645698	30	2.2	30	97	2	123	33	16	10	38	1.84
656937--656990	27	2.0	27	100	0	108	33	18	11	37	1.86
665978--666024	10	5.5	8	82	14	51	23	25	34	17	1.96
665988--666021	15	2.1	16	89	10	52	23	26	35	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669767--669807	13	3.2	13	85	0	64	19	21	43	14	1.87
671664--671712	24	2.0	24	96	0	89	44	12	10	32	1.75
672249--672318	30	2.3	31	82	2	79	34	24	7	34	1.83
674706--674768	2	32.0	2	96	3	119	50	0	0	49	1.00
683625--683664	21	1.9	22	90	10	66	55	0	12	32	1.38
685033--685077	24	1.9	24	81	4	56	33	4	0	62	1.15
685393--685458	2	33.0	2	100	0	132	50	0	0	50	1.00
685639--685671	17	1.9	17	93	0	57	72	0	0	27	0.85
689607--689701	42	2.3	42	86	0	136	16	13	32	36	1.88
689803--689842	19	2.1	19	100	0	80	25	20	15	40	1.90
690288--690580	152	1.9	152	97	1	552	44	4	7	44	1.51
693825--693860	18	2.0	18	100	0	72	27	22	22	27	1.99
693929--693957	15	2.0	15	93	6	51	41	6	3	48	1.47
703147--703256	54	2.0	54	100	0	220	29	24	14	31	1.95
710110--710145	18	2.0	18	88	0	54	38	0	16	44	1.48
710257--710314	27	2.1	28	83	6	73	41	5	6	46	1.53
710317--710353	18	2.1	18	89	0	56	35	2	10	51	1.51
711114--711231	7	17.9	7	68	20	51	43	3	8	44	1.51
711143--711214	31	2.3	31	80	7	83	40	2	9	47	1.51
711354--711456	6	16.3	7	75	13	50	41	0	5	51	1.32
711318--711447	27	5.2	26	79	12	105	43	3	5	47	1.41
711393--711661	2	128.0	2	67	19	113	44	3	5	46	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
711747--711780	15	2.3	15	90	10	52	38	11	8	41	1.73
711789--711825	15	2.4	16	86	8	51	51	8	5	35	1.55
711819--711888	27	2.6	27	90	0	113	47	7	7	38	1.59
711892--711996	33	3.3	32	76	12	101	45	5	3	44	1.45
711971--712012	20	2.2	20	83	8	52	50	11	0	38	1.40
712991--713021	6	5.2	6	100	0	62	32	0	32	35	1.58
713111--713482	42	8.9	42	91	0	577	36	24	18	20	1.95
713108--713538	42	10.3	41	89	2	420	35	23	19	21	1.95
713458--713538	44	1.9	40	87	9	117	34	23	20	20	1.97
713712--713764	2	28.0	2	78	17	60	45	1	0	52	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14