genome.fa.s8925.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008925.1 Hibiscus syriacus cultivar Beakdansim tig00112230_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2702387

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2471350--2471378	10	2.7	11	89	10	51	75	0	6	17	1.01
2471354--2471388	10	3.7	10	88	11	56	74	0	8	17	1.06
2474058--2474102	23	2.0	23	100	0	90	48	17	4	28	1.66
2474434--2474506	35	2.1	35	94	0	128	58	13	9	17	1.61
2475642--2475673	15	2.1	15	100	0	64	59	0	0	40	0.97
2477782--2477822	14	2.9	14	96	0	73	43	4	19	31	1.72
2480986--2481059	3	24.7	3	100	0	148	32	0	0	67	0.91
2483374--2483927	244	2.2	248	90	2	850	37	14	5	43	1.69
2483854--2484009	81	1.9	81	94	2	278	35	14	3	46	1.62
2483610--2484254	329	2.0	323	87	3	934	36	14	6	42	1.70
2487915--2487955	6	6.8	6	82	0	55	29	17	2	51	1.58
2488148--2488202	23	2.4	22	87	6	74	38	20	20	21	1.94
2488868--2488910	19	2.3	19	100	0	86	27	16	11	44	1.82
2492074--2492103	2	15.0	2	100	0	60	50	0	0	50	1.00
2494207--2494232	10	2.6	10	100	0	52	7	7	61	23	1.49
2497919--2497956	9	3.7	10	83	16	51	28	2	2	65	1.19
2502186--2502235	21	2.5	20	80	9	57	32	12	24	32	1.91
2502897--2502940	21	2.1	21	95	0	79	13	27	43	15	1.85
2505683--2505741	21	2.9	21	87	2	84	16	27	35	20	1.94
2505684--2505746	20	3.1	20	86	2	90	14	26	38	20	1.91
2506748--2506854	53	2.0	53	94	0	187	26	14	20	39	1.90
2507729--2507774	21	2.1	22	84	4	58	69	0	4	26	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2509951--2509988	11	3.5	11	100	0	76	73	0	7	18	1.06
2510422--2510479	3	19.3	3	82	7	73	31	32	1	34	1.68
2516961--2517017	22	2.6	22	88	0	87	43	19	12	24	1.85
2517354--2517471	54	2.2	54	86	3	157	29	17	21	31	1.96
2517557--2518077	82	6.4	82	90	1	787	35	12	23	27	1.91
2517557--2518077	245	2.1	246	91	1	832	35	12	23	27	1.91
2518075--2518186	47	2.3	47	82	8	120	30	11	25	33	1.91
2522150--2522258	3	36.0	3	87	5	157	34	0	2	62	1.10
2522715--2522759	10	4.5	10	80	0	54	48	24	26	0	1.51
2524621--2524657	15	2.7	15	88	12	53	24	5	8	62	1.44
2531561--2531868	114	2.8	113	89	4	443	32	15	20	31	1.94
2534296--2534372	22	3.5	22	70	7	59	37	11	11	38	1.78
2535041--2535836	76	10.5	76	97	0	1439	22	21	20	35	1.96
2535961--2536073	3	37.0	3	89	3	172	34	0	2	62	1.09
2538470--2538514	17	2.5	19	82	10	60	55	17	0	26	1.42
2538609--2538849	36	6.7	36	87	4	283	21	25	21	30	1.98
2538611--2538841	72	3.2	72	85	3	322	21	25	22	30	1.99
2538576--2538841	108	2.5	107	85	2	336	22	24	22	30	1.99
2540187--2540284	44	2.2	44	96	0	178	41	7	12	38	1.70
2545353--2545391	20	2.0	20	100	0	78	30	17	20	30	1.96
2558269--2558302	16	2.1	16	94	0	59	47	5	2	44	1.42
2559738--2559812	37	2.0	37	81	0	87	26	17	14	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2560299--2560398	44	2.3	44	81	10	107	30	17	19	34	1.94
2568535--2568577	15	2.9	15	80	13	61	60	0	23	16	1.35
2572912--2572969	27	2.1	27	90	0	89	17	6	17	58	1.59
2573645--2573681	19	2.0	20	84	10	51	54	5	8	32	1.53
2584384--2584423	21	2.0	21	85	5	55	50	0	5	45	1.23
2587042--2587094	21	2.7	20	88	5	72	33	16	16	32	1.92
2587442--2587938	57	8.8	57	84	3	578	35	9	18	37	1.83
2587442--2587918	169	2.8	168	84	5	606	35	9	17	37	1.83
2589595--2589768	90	1.9	89	89	3	269	45	7	10	35	1.67
2596444--2596619	90	2.0	90	91	0	289	44	7	9	38	1.65
2602865--2603228	57	6.5	57	83	2	459	35	9	17	37	1.82
2602860--2603268	170	2.4	170	86	2	556	35	9	18	37	1.83
2635290--2635360	20	3.5	19	73	16	54	30	16	21	30	1.95
2635310--2635354	22	2.0	23	86	4	65	31	15	17	35	1.92
2635686--2636257	54	10.6	54	90	1	844	32	22	15	29	1.95
2642838--2643224	54	7.2	54	88	1	544	30	21	17	30	1.96
2646588--2646637	20	2.5	20	83	0	73	52	22	6	20	1.68
2658736--2658780	23	2.0	23	90	0	72	17	24	26	31	1.97
2668182--2668851	254	2.6	252	82	4	816	33	14	15	36	1.89
2668697--2668797	41	2.4	42	80	6	107	29	18	18	32	1.95
2668182--2668880	249	2.8	243	75	9	645	35	14	16	34	1.88
2668863--2668904	14	2.7	15	82	17	50	76	0	21	2	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2671395--2671419	4	6.2	4	100	0	50	28	0	0	72	0.86
2675896--2676267	85	4.4	85	86	2	464	36	19	18	26	1.94
2675871--2676267	170	2.3	170	85	1	512	35	19	18	26	1.95
2676122--2676396	145	1.9	145	86	3	392	37	17	17	28	1.92
2677177--2677311	37	3.5	37	85	6	173	44	2	7	45	1.44
2677325--2677365	3	14.3	3	80	19	52	29	0	0	70	0.87
2677329--2677375	5	9.4	5	84	11	53	25	0	0	74	0.82
2677329--2677375	19	2.3	20	89	7	69	25	0	0	74	0.82
2677326--2677378	9	5.8	9	85	10	56	24	0	0	75	0.80
2678522--2678569	18	2.6	19	80	9	55	29	2	0	68	1.01
2679931--2679994	28	2.3	28	97	0	119	42	14	15	28	1.86
2684705--2684748	22	2.0	22	90	0	70	22	13	18	45	1.84
2685943--2686126	43	4.3	43	80	2	181	29	21	20	28	1.98
2685984--2686098	44	2.7	43	87	1	149	29	19	20	31	1.97
2688867--2689167	41	7.3	41	84	4	365	33	18	20	26	1.96
2688871--2689167	83	3.6	82	83	4	375	33	18	20	27	1.96
2689209--2689411	41	4.9	40	80	8	178	32	16	15	35	1.90
2689233--2689411	41	4.4	40	82	9	184	33	16	15	34	1.90
2689234--2689393	82	2.0	81	86	6	225	31	16	15	36	1.91
2689419--2689576	42	3.8	41	79	12	171	23	20	21	34	1.97
2689404--2689600	82	2.4	83	85	7	249	23	20	20	35	1.96
2689297--2689600	42	7.3	41	72	10	163	26	19	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2689297--2689601	124	2.4	125	76	10	295	26	19	18	35	1.95
2690504--2690574	30	2.5	29	80	8	85	18	33	25	22	1.96
2690964--2691032	30	2.3	30	87	0	102	23	21	34	20	1.96
2692234--2692289	25	2.2	25	81	6	60	30	14	19	35	1.91
2692473--2692497	13	1.9	13	100	0	50	16	4	8	72	1.24
2692548--2693155	102	5.8	104	74	16	410	30	2	12	54	1.52
2697667--2697705	19	2.1	19	85	0	51	28	0	10	61	1.28
2701697--2702091	190	2.1	189	81	7	473	38	9	10	41	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!