genome.fa.s8925.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008925.1 Hibiscus syriacus cultivar Beakdansim tig00112230_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2702387

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519266--519368	24	4.3	24	75	4	91	24	18	16	40	1.90
523359--523692	54	6.2	54	93	0	551	35	19	15	28	1.93
530535--530868	54	6.2	54	93	0	542	35	17	17	28	1.94
531237--531281	21	2.1	21	100	0	90	24	28	15	31	1.96
538131--538161	15	2.1	15	93	0	53	35	19	3	41	1.67
538995--539049	24	2.3	24	87	0	83	21	23	18	36	1.95
539890--539914	12	2.1	12	100	0	50	44	0	8	48	1.32
541808--541874	22	3.0	22	86	0	89	31	13	23	31	1.93
545535--545568	18	1.9	17	88	5	50	47	0	29	23	1.52
546550--546613	22	2.9	22	83	0	83	29	17	23	29	1.97
551455--551496	10	4.1	10	90	6	66	28	2	11	57	1.47
551455--551496	21	2.0	20	90	4	66	28	2	11	57	1.47
551463--551505	21	2.0	21	82	8	52	27	9	6	55	1.57
552054--552213	80	2.0	80	91	0	257	46	16	13	24	1.82
562390--562423	2	16.5	2	93	6	59	47	0	2	50	1.16
564550--564600	19	2.7	19	77	14	61	66	0	9	23	1.21
564699--564818	21	5.5	21	74	13	66	67	0	4	27	1.14
564701--564756	25	2.3	23	85	11	69	73	0	1	25	0.93
564721--564757	10	3.5	11	82	17	51	75	0	0	24	0.80
564701--564772	24	2.9	25	80	14	78	66	0	4	29	1.10
565485--565577	37	2.5	37	82	0	105	31	11	13	43	1.81
566336--567430	106	10.3	106	91	0	1654	22	18	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573392--573465	18	4.3	17	80	11	53	60	0	1	37	1.05
573422--573467	2	23.5	2	91	4	76	54	0	0	45	0.99
573406--573469	6	11.0	6	86	9	53	59	0	0	40	0.97
573677--573728	25	2.1	25	82	7	61	63	3	5	26	1.34
574193--574294	37	2.8	37	90	0	150	32	13	13	40	1.84
581816--581860	12	3.6	12	80	11	54	77	2	17	2	0.97
598722--598794	24	3.0	24	97	0	137	39	12	15	32	1.84
601012--601693	342	2.0	345	85	1	940	35	12	21	30	1.91
604211--604355	72	2.0	72	91	0	236	32	11	22	33	1.89
606588--606666	33	2.3	35	80	8	108	41	18	13	25	1.88
616010--616067	21	3.1	18	77	20	64	53	3	25	17	1.59
616010--616061	21	2.6	21	82	14	65	51	3	26	17	1.62
617260--617312	17	3.1	17	83	5	72	39	15	5	39	1.70
617205--617309	52	2.0	52	81	3	122	36	14	7	41	1.74
621265--621409	72	2.0	72	91	0	236	32	11	22	33	1.89
623616--623694	33	2.3	35	80	12	110	44	17	13	24	1.85
628446--628514	30	2.3	30	97	0	129	27	14	27	30	1.95
637291--637919	5	127.8	5	87	11	921	60	38	0	0	1.00
639027--639544	274	1.9	276	92	1	880	33	15	15	35	1.89
647062--647100	17	2.3	17	90	0	60	46	2	5	46	1.38
647078--647133	23	2.3	24	93	6	96	42	0	3	53	1.18
648526--648570	18	2.5	19	75	13	51	24	4	0	71	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657613--657651	21	1.9	20	84	5	51	28	15	20	35	1.93
668042--668074	16	2.1	16	94	0	57	66	9	0	24	1.20
670025--670079	26	2.1	27	93	3	94	34	30	12	21	1.91
679171--679195	13	1.9	13	100	0	50	44	0	0	56	0.99
682910--683171	46	5.6	46	86	7	346	20	20	10	48	1.78
682943--683277	26	14.0	26	72	18	282	20	20	11	46	1.81
682968--683041	20	3.4	20	68	20	58	20	25	10	43	1.84
682956--683240	72	4.0	71	80	11	348	21	20	10	47	1.80
683184--683304	20	5.7	20	68	16	82	20	24	12	42	1.87
683160--683316	46	3.5	46	89	4	243	21	21	12	45	1.84
687581--688043	46	10.2	46	82	8	572	21	22	9	45	1.81
687643--687900	66	3.8	66	70	17	213	22	21	10	45	1.82
687775--688032	20	11.7	20	80	14	219	20	25	10	43	1.84
687730--688043	112	2.8	111	82	10	440	21	23	9	44	1.82
691326--691364	19	2.1	19	100	0	78	20	15	23	41	1.90
692076--692156	25	3.2	25	80	1	99	35	29	9	24	1.88
692646--692671	13	2.0	13	100	0	52	38	7	15	38	1.76
699059--699135	25	3.1	25	92	0	118	35	29	11	23	1.90
700317--700534	54	4.0	54	83	3	231	33	15	16	33	1.90
700338--700533	108	1.8	108	85	0	275	36	13	15	34	1.87
700749--701276	68	7.8	68	86	1	709	32	15	22	29	1.95
701248--701519	81	3.4	81	86	0	382	37	9	23	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
706002--706200	54	3.6	54	83	1	254	35	14	16	34	1.89
706423--706872	203	2.2	204	88	1	688	31	13	23	31	1.93
706415--706872	68	6.8	68	87	1	659	31	13	23	31	1.93
706829--707113	81	3.5	80	83	6	335	34	12	24	29	1.92
707199--707259	31	2.0	31	83	3	79	37	27	4	29	1.78
707857--707881	11	2.3	11	100	0	50	32	16	0	52	1.44
707949--708011	31	2.0	31	100	0	126	36	38	3	22	1.70
708268--708327	25	2.5	24	81	7	77	58	6	0	35	1.24
708263--708344	25	3.5	24	74	11	71	53	9	1	35	1.42
714009--714118	18	5.3	21	75	19	90	41	0	6	50	1.34
732178--732242	2	32.5	2	100	0	130	50	0	0	49	1.00
732400--732428	2	15.0	2	92	7	51	51	0	0	48	1.00
732400--732436	8	4.2	9	89	10	51	51	0	2	45	1.15
733060--733140	42	1.9	42	87	5	119	24	4	22	48	1.70
733258--733322	27	2.4	27	97	0	121	33	4	0	61	1.16
736291--736341	20	2.5	20	100	0	102	31	15	27	25	1.96
736766--737311	54	10.1	54	92	0	876	26	19	21	32	1.97
737315--737470	57	2.7	58	80	2	172	35	9	17	37	1.83
741317--741485	76	2.2	76	87	4	252	30	2	10	56	1.46
741345--741484	75	1.9	76	93	1	246	27	2	11	59	1.43
742129--742177	23	2.2	23	88	3	73	22	4	0	73	1.00
747855--747897	16	2.6	16	85	14	61	13	0	2	83	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747860--747896	9	4.3	9	83	10	51	8	0	2	89	0.58
747904--747945	20	2.2	19	87	12	59	23	4	0	71	1.05
748892--748938	20	2.3	21	72	20	55	46	12	10	29	1.76
749735--749899	76	2.2	75	86	3	233	30	2	10	56	1.45
749763--749910	75	2.0	76	89	4	228	27	2	10	60	1.40
750549--750597	23	2.2	23	88	3	73	22	4	0	73	1.00
750912--750940	15	1.9	15	100	0	58	41	17	20	20	1.90
751605--751637	14	2.2	16	89	10	52	51	0	15	33	1.43
751706--751740	18	1.9	18	94	0	61	17	22	28	31	1.96
751900--751938	2	19.0	2	94	5	69	48	0	2	48	1.15
754263--754866	54	11.2	54	89	0	893	26	18	20	34	1.96
754850--754998	59	2.5	59	87	1	219	34	12	19	33	1.90
758448--758509	13	4.2	16	67	25	55	46	0	0	53	1.00
758866--758896	14	2.3	14	94	5	55	51	6	0	41	1.27
759067--759194	50	2.6	50	79	0	139	16	34	28	21	1.95
762460--762528	14	4.5	15	74	13	52	71	2	2	23	1.14
764541--764866	104	3.0	109	84	8	430	45	11	7	36	1.68
764941--764983	14	3.2	13	86	3	50	62	2	9	25	1.37
766429--766463	16	2.2	16	100	0	70	11	0	37	51	1.38
766661--766734	37	2.0	36	84	7	96	50	4	0	45	1.20
771582--771662	32	2.6	32	90	2	128	14	23	27	34	1.94
774485--774785	28	10.8	28	84	6	326	50	3	4	41	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774485--774784	42	7.1	42	86	5	324	50	3	4	41	1.38
774499--774785	98	2.9	98	96	0	520	50	3	4	41	1.38
774480--774784	56	5.4	56	88	3	377	50	3	4	41	1.38
780008--780053	20	2.3	19	89	10	74	54	10	17	17	1.70
780175--780221	20	2.4	19	79	10	58	55	8	17	19	1.67
782523--782588	33	2.0	33	87	0	96	28	1	45	24	1.62
784379--784422	19	2.4	19	92	3	72	31	2	9	56	1.43
784505--786125	199	8.1	199	97	0	3005	37	14	15	32	1.88
784505--786125	397	4.1	398	97	0	3014	37	14	15	32	1.88
787582--787649	21	3.4	18	69	21	55	36	8	35	19	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11