genome.fa.s8925.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008925.1 Hibiscus syriacus cultivar Beakdansim tig00112230_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2702387

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1711897--1711976	24	3.5	22	75	14	83	22	23	23	30	1.99
1712196--1712258	19	3.2	19	75	4	54	55	12	0	31	1.37
1712216--1712380	76	2.2	76	85	3	235	56	9	2	31	1.45
1715879--1715917	16	2.4	16	95	0	69	17	28	15	38	1.91
1716098--1716124	13	2.1	13	100	0	54	55	0	0	44	0.99
1716164--1716210	14	3.7	14	71	26	50	44	0	4	51	1.21
1716163--1716212	23	2.1	24	96	3	93	48	0	4	48	1.20
1716681--1716759	20	3.7	20	70	23	70	26	25	0	48	1.52
1716834--1716860	2	13.5	2	100	0	54	51	0	0	48	1.00
1716941--1717131	2	102.0	2	68	17	90	45	2	2	49	1.29
1716943--1717013	26	2.6	28	93	4	119	53	4	1	40	1.29
1717216--1717249	17	1.9	17	88	5	50	47	0	26	26	1.53
1717486--1717526	21	2.0	21	90	0	64	48	24	0	26	1.51
1717539--1717604	18	3.6	19	76	19	68	46	7	4	40	1.52
1717557--1717610	2	26.0	2	81	7	63	48	5	1	44	1.37
1717717--1717850	68	2.0	67	86	5	189	44	3	2	49	1.35
1717867--1718011	18	9.0	16	69	19	79	44	2	5	46	1.40
1717832--1718022	93	2.0	100	90	7	315	43	3	5	47	1.43
1719547--1719599	22	2.4	22	96	0	97	18	28	18	33	1.95
1725441--1725485	19	2.4	19	88	0	63	17	2	8	71	1.23
1737006--1737034	10	2.9	10	100	0	58	27	20	10	41	1.85
1749555--1749611	28	2.0	28	89	0	87	10	7	17	64	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1749555--1749595	14	2.9	15	75	10	50	9	4	17	68	1.35
1749779--1749815	10	3.7	10	85	0	56	18	13	10	56	1.66
1749815--1749901	24	3.7	24	90	1	131	12	13	17	56	1.68
1752244--1752353	36	3.1	35	65	23	93	36	23	12	27	1.91
1761512--1761550	19	2.0	20	85	5	53	10	30	0	58	1.31
1762889--1764255	686	2.0	686	97	0	2608	34	13	14	38	1.84
1764597--1764641	20	2.3	20	88	3	65	37	0	24	37	1.56
1770099--1770138	21	2.0	21	90	5	64	32	17	17	32	1.93
1780065--1780135	34	2.1	34	86	0	97	28	11	15	45	1.80
1781929--1781978	18	2.5	20	78	21	61	46	0	0	54	1.00
1781925--1781981	13	4.8	12	78	20	57	45	0	0	54	0.99
1793637--1793824	89	2.1	89	86	5	265	37	19	19	23	1.94
1793690--1793823	43	3.0	45	69	10	121	36	20	19	23	1.95
1793654--1793802	43	3.4	42	70	12	129	38	16	22	22	1.93
1793659--1793843	89	2.1	89	83	6	232	38	17	18	24	1.92
1795202--1795253	27	1.9	27	84	7	70	51	0	3	44	1.19
1800141--1800181	22	1.9	21	90	5	64	19	2	36	41	1.65
1801424--1801462	14	2.6	15	84	12	53	51	0	2	46	1.14
1801428--1801484	23	2.4	25	80	11	66	47	1	7	43	1.40
1804312--1804366	25	2.2	26	87	6	78	0	16	1	81	0.77
1804314--1804366	14	3.6	15	80	19	58	0	16	1	81	0.79
1804337--1804368	17	1.9	17	93	6	57	0	15	6	78	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1806148--1806194	20	2.3	20	88	0	67	25	29	21	23	1.99
1813241--1813266	8	3.2	8	100	0	52	65	23	0	11	1.25
1814401--1814426	3	8.7	3	100	0	52	69	30	0	0	0.89
1828710--1828788	33	2.4	33	95	0	149	37	18	15	27	1.91
1833318--1833413	33	2.9	34	87	4	124	37	18	14	29	1.91
1838747--1838867	60	2.0	60	98	0	233	38	13	12	35	1.82
1840876--1841010	34	3.7	34	71	16	117	56	18	7	17	1.64
1840830--1841015	77	2.4	78	90	0	284	56	17	8	16	1.64
1841315--1841449	34	3.7	34	71	16	117	56	18	7	17	1.64
1841269--1841454	77	2.4	78	90	0	284	56	17	8	16	1.64
1840740--1841621	439	2.0	442	99	0	1734	43	20	12	23	1.86
1853065--1853213	31	4.8	31	75	3	147	38	18	10	32	1.84
1853091--1853216	62	2.0	62	84	3	164	38	19	11	30	1.87
1854468--1854506	20	2.0	20	95	5	71	28	20	10	41	1.85
1863406--1863441	18	2.0	18	94	0	63	25	0	16	58	1.38
1863477--1863509	12	2.6	13	90	4	50	36	12	6	45	1.66
1867263--1867581	111	2.9	111	84	2	392	32	15	16	34	1.91
1874448--1874769	111	2.9	110	86	3	450	33	16	18	31	1.93
1875798--1875858	32	1.9	32	86	6	88	32	14	18	34	1.91
1876242--1876279	20	1.9	20	94	0	67	26	21	13	39	1.89
1878033--1878064	15	2.1	16	94	5	57	56	0	12	31	1.37
1878029--1878066	14	2.6	15	84	15	53	60	0	13	26	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1881277--1881340	21	3.1	20	81	4	74	34	25	10	29	1.90
1881288--1881360	21	3.7	20	80	8	78	34	24	15	26	1.94
1881283--1881359	40	1.9	41	89	2	120	36	24	12	25	1.92
1883786--1883818	16	2.1	16	88	11	50	33	9	3	54	1.47
1884576--1884639	31	2.1	31	88	2	94	50	14	10	25	1.75
1884585--1884652	30	2.2	31	84	7	86	50	13	8	27	1.71
1888615--1888685	34	2.1	34	82	10	83	54	18	4	22	1.60
1889644--1889681	14	2.7	14	91	0	58	26	26	23	23	2.00
1890931--1890975	20	2.3	20	80	3	56	44	4	4	46	1.43
1892942--1892973	3	10.7	3	93	0	55	65	0	3	31	1.08
1894291--1894372	3	28.0	3	75	14	73	57	0	0	42	0.98
1894291--1894372	21	4.0	22	79	20	106	57	0	0	42	0.98
1894526--1895238	302	2.3	305	97	0	1333	34	23	19	23	1.97
1894526--1895238	76	9.4	76	96	0	1331	34	23	19	23	1.97
1895849--1895903	22	2.5	22	93	0	101	40	14	10	34	1.81
1897976--1898017	13	3.2	13	89	0	66	19	45	19	16	1.86
1897954--1897999	18	2.6	18	89	0	74	19	52	17	10	1.74
1898010--1898043	17	2.1	17	89	10	54	11	32	26	29	1.92
1900303--1900341	12	3.3	12	82	7	53	15	17	20	46	1.84
1900307--1900347	12	3.5	11	83	9	55	14	17	19	48	1.81
1900304--1900367	24	2.7	23	83	4	83	20	10	18	50	1.77
1903831--1903866	18	2.0	18	88	0	54	52	0	16	30	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1904778--1904864	24	3.7	23	76	3	66	22	10	18	48	1.78
1906992--1907028	13	2.8	13	87	0	56	16	43	21	18	1.88
1908355--1908390	18	2.0	18	88	0	54	52	0	16	30	1.44
1909302--1909388	24	3.7	23	76	3	66	22	10	18	48	1.78
1911507--1911576	18	4.2	18	75	17	78	17	47	20	15	1.83
1911529--1911565	13	2.8	13	87	0	56	16	43	21	18	1.88
1912892--1912927	18	2.0	18	88	0	54	52	0	16	30	1.44
1913840--1913926	24	3.7	23	82	3	84	20	13	18	47	1.83
1913843--1913907	12	5.5	11	74	18	60	16	18	18	46	1.85
1916042--1916111	18	4.2	18	71	17	78	17	47	20	15	1.83
1917424--1917459	18	2.0	18	88	0	54	52	0	16	30	1.44
1918372--1918458	24	3.7	23	82	3	84	20	13	18	47	1.83
1918375--1918439	12	5.5	11	74	18	60	16	18	18	46	1.85
1920579--1920626	13	3.7	13	94	0	87	16	47	20	14	1.82
1921955--1921990	18	2.0	18	88	0	54	52	0	16	30	1.44
1922902--1922988	24	3.7	23	82	3	84	20	13	18	47	1.83
1922905--1922969	12	5.5	11	74	18	60	16	18	18	46	1.85
1924973--1925193	114	1.9	114	91	0	361	29	20	14	34	1.93
1932570--1932601	3	10.7	3	93	0	55	65	0	3	31	1.08
1933921--1933990	3	24.0	3	76	16	67	58	0	0	41	0.98
1933922--1933990	11	5.7	12	76	17	63	57	0	0	42	0.98
1933921--1933990	22	3.4	22	75	24	89	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1937797--1937889	42	2.2	41	80	1	105	37	9	23	29	1.87
1938314--1938455	20	6.5	20	74	20	115	42	12	28	16	1.85
1938334--1938467	46	2.9	46	96	0	241	44	11	26	17	1.84
1938814--1939063	81	3.1	81	90	1	349	33	12	24	29	1.92
1941032--1941059	2	14.0	2	100	0	56	50	0	0	50	1.00
1943797--1944006	46	4.6	46	89	1	296	43	11	23	21	1.85
1943810--1943933	20	5.6	20	67	20	77	41	10	26	20	1.85
1943797--1944006	92	2.3	92	89	0	330	43	11	23	21	1.85
1943969--1944019	26	2.0	26	88	0	75	50	7	17	23	1.72
1944365--1944614	81	3.1	81	86	2	306	35	11	22	30	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11