genome.fa.s8925.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008925.1 Hibiscus syriacus cultivar Beakdansim tig00112230_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2702387

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195552--195688	41	3.5	37	74	19	118	41	1	2	54	1.24
195549--195809	2	137.0	2	68	22	100	40	2	4	53	1.33
202270--202319	26	2.0	25	88	4	73	22	14	18	46	1.84
218358--218419	23	2.7	23	75	7	72	30	24	25	19	1.98
227269--227308	21	2.0	21	90	5	64	32	12	15	40	1.84
242739--242801	28	2.2	29	83	8	85	46	3	3	47	1.34
244975--245005	16	1.9	16	100	0	62	58	3	12	25	1.50
246524--246594	2	35.5	2	100	0	142	49	0	0	50	1.00
249786--249893	46	2.2	48	80	11	132	37	25	12	25	1.90
249975--250066	45	2.0	45	93	0	157	34	13	17	34	1.88
254356--254418	21	3.0	20	82	15	76	46	30	0	23	1.53
254349--254414	7	9.4	7	81	0	69	48	30	0	21	1.50
254738--254780	21	2.0	22	81	4	52	53	4	9	32	1.53
255038--255068	16	1.9	16	93	0	53	41	12	3	41	1.59
256333--256360	14	2.0	14	100	0	56	7	35	35	21	1.81
268360--268421	22	3.0	21	77	11	65	22	37	24	16	1.94
268360--268398	20	1.9	20	89	5	60	20	38	25	15	1.92
270725--270754	13	2.2	14	94	5	53	46	13	0	40	1.43
271912--271962	26	2.0	26	100	0	102	43	13	11	31	1.80
271914--271969	26	2.2	26	93	0	94	44	14	8	32	1.76
272584--272632	20	2.5	20	82	0	62	10	18	36	34	1.85
275882--275907	6	4.3	6	100	0	52	50	15	19	15	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275996--276050	20	2.8	20	88	0	74	10	16	32	40	1.83
279060--279222	60	2.7	60	81	6	190	31	18	6	42	1.76
282188--282390	74	2.7	74	89	3	291	32	26	22	18	1.97
284352--284391	21	1.9	21	85	10	55	52	5	7	35	1.51
288190--288262	23	3.3	21	83	12	85	19	30	23	27	1.98
290820--291028	76	2.8	76	90	3	327	30	26	22	20	1.98
296297--296934	319	2.0	319	94	0	1116	34	21	10	33	1.88
303730--304149	217	1.9	217	96	0	777	38	13	19	29	1.89
309148--309172	11	2.3	11	100	0	50	76	8	16	0	1.02
309199--309263	5	13.6	5	73	20	59	80	1	18	0	0.80
309216--309263	6	7.5	6	78	21	53	81	0	18	0	0.70
309204--309259	20	2.7	20	86	13	78	80	1	17	0	0.80
309198--309263	19	3.5	19	86	13	84	80	1	18	0	0.79
309199--309256	7	7.9	8	76	20	56	79	1	18	0	0.82
309199--309258	14	4.3	14	85	10	79	80	1	18	0	0.80
320130--320189	29	2.1	29	90	3	95	16	16	6	60	1.56
321855--321888	17	2.1	17	88	5	52	32	0	0	67	0.91
323612--323747	51	2.7	49	76	4	146	40	13	11	35	1.80
329299--329324	13	2.0	13	100	0	52	46	0	38	15	1.46
338743--338797	24	2.2	24	90	3	83	45	14	12	27	1.81
340014--340067	20	2.7	20	88	0	81	27	16	16	38	1.90
345796--345852	29	2.0	29	82	6	71	40	24	3	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346136--346200	28	2.3	28	91	0	103	36	12	13	36	1.83
357107--357308	45	4.5	45	94	2	345	39	8	22	29	1.84
362556--362618	29	2.1	31	88	5	94	33	17	6	42	1.74
367778--367819	16	2.6	16	82	10	50	28	0	14	57	1.38
383591--383652	30	2.1	30	84	0	79	33	19	12	33	1.90
383606--383697	30	2.9	32	88	6	125	31	19	13	35	1.90
383609--383697	34	2.8	30	88	6	115	32	20	12	34	1.90
383639--383698	17	3.5	18	73	11	63	31	20	13	35	1.91
383854--383896	22	2.0	21	86	8	61	41	11	9	37	1.74
390227--390253	7	3.9	7	100	0	54	14	0	0	85	0.61
392346--392528	3	61.7	3	97	2	352	33	0	0	66	0.92
393236--393288	25	2.1	25	96	0	97	50	9	7	32	1.62
394502--394543	17	2.5	17	96	0	75	54	0	9	35	1.33
394498--394544	17	2.4	21	70	30	57	51	0	8	40	1.33
396838--397015	90	2.0	90	94	0	311	46	6	10	36	1.65
403450--403626	90	2.0	90	92	2	293	45	6	11	36	1.66
405800--406039	54	4.4	54	92	0	381	27	19	21	31	1.97
417469--417702	54	4.3	54	84	4	276	29	16	19	35	1.94
417477--417702	108	2.1	108	86	3	321	29	16	18	35	1.93
421421--421454	9	3.7	9	92	4	50	23	2	0	73	0.97
427420--427471	26	1.9	28	88	7	81	28	21	25	25	1.99
433935--434005	29	2.4	31	76	9	76	32	16	7	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434183--434209	2	13.5	2	100	0	54	51	0	0	48	1.00
446840--446906	24	2.8	24	80	8	66	79	8	10	1	1.01
447396--447445	22	2.3	22	82	3	57	48	16	2	34	1.57
448460--448701	124	2.0	123	83	8	312	32	22	21	23	1.98
449392--449443	15	3.5	15	80	12	63	32	0	7	59	1.26
449392--449443	3	17.7	3	76	11	54	32	0	7	59	1.26
450713--450740	2	14.0	2	100	0	56	50	0	0	50	1.00
450931--450973	7	6.3	7	81	5	52	39	18	25	16	1.91
452137--452467	154	2.1	155	83	3	414	50	6	15	27	1.68
454048--454118	35	2.0	35	83	5	90	28	7	12	52	1.65
459156--459206	24	2.1	24	96	0	93	23	13	25	37	1.92
463912--464218	153	2.0	153	98	0	587	28	13	26	31	1.93
468908--468936	15	1.9	15	100	0	58	17	41	20	20	1.90
472570--472666	27	3.4	27	81	14	115	14	9	35	41	1.78
472571--472672	32	3.4	31	88	7	133	13	9	36	40	1.78
473251--473297	18	2.7	18	90	3	69	27	27	8	36	1.86
474850--474935	2	49.0	2	71	25	52	55	0	0	44	0.99
474841--474925	34	2.5	34	88	0	134	56	0	0	43	0.99
474977--475002	13	2.0	13	100	0	52	53	23	7	15	1.67
475430--475477	23	2.1	23	96	0	87	45	10	4	39	1.58
476401--476796	148	2.7	147	85	5	559	47	7	6	37	1.58
476949--476990	20	2.0	20	90	4	66	69	4	4	21	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476994--477041	16	3.0	17	85	8	57	60	6	6	27	1.45
478311--478359	3	16.7	3	87	12	75	63	0	0	36	0.95
478483--478674	45	4.3	45	96	2	359	34	19	22	22	1.96
479381--479437	23	2.5	22	88	2	78	36	12	14	36	1.83
479797--479954	54	2.9	54	83	3	185	27	20	15	36	1.93
488793--488913	61	2.0	61	91	0	197	31	11	26	30	1.91
492087--492311	82	2.8	81	84	8	273	37	18	11	32	1.86
492089--492311	41	5.4	40	78	7	218	38	18	11	32	1.86
492303--492393	41	2.2	40	86	1	119	39	19	6	34	1.78
494735--494791	27	2.1	27	90	0	87	35	12	26	26	1.92
498406--498454	16	3.2	16	72	11	50	51	0	10	38	1.36
498433--498511	26	3.2	25	75	8	72	48	0	6	45	1.28
498480--498537	21	2.8	21	79	10	66	41	0	13	44	1.44
498554--498609	21	2.6	23	75	13	64	42	1	5	50	1.35
498554--498616	22	2.9	22	74	11	67	42	3	4	49	1.39
500404--500445	2	21.0	2	100	0	84	50	0	0	50	1.00
501116--501174	22	2.6	21	77	20	57	33	0	1	64	1.04
501764--501835	19	3.6	19	86	5	90	22	34	16	26	1.95
502529--502598	3	23.3	3	82	0	86	57	0	0	42	0.99
502506--502596	9	9.9	9	78	4	92	52	0	1	46	1.07
502529--502596	18	3.8	18	94	0	109	57	0	0	42	0.98
502530--502609	18	4.3	18	76	14	81	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502750--503068	131	2.4	132	90	1	482	28	17	21	31	1.96
503045--503430	45	8.5	45	92	0	565	32	19	23	25	1.98
503300--503373	25	3.2	24	64	25	59	36	14	24	24	1.93
504089--504143	22	2.5	22	90	0	83	38	10	12	38	1.79
504084--504145	22	2.9	21	83	9	81	40	11	12	35	1.80
505534--505734	75	2.7	76	85	6	259	29	21	15	33	1.94
508335--508397	32	2.0	32	93	0	108	20	14	17	47	1.82
508852--508890	16	2.8	13	79	20	51	0	17	0	82	0.68
508860--508893	16	2.1	16	100	0	68	0	17	0	82	0.67
514574--514628	26	2.1	26	100	0	110	56	7	7	29	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11