genome.fa.s8925.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008925.1 Hibiscus syriacus cultivar Beakdansim tig00112230_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2702387

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1296 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1222439--1222598	20	7.7	20	82	8	151	24	20	31	24	1.98
1222497--1222556	22	2.7	22	84	0	75	23	16	35	25	1.95
1222678--1222735	30	2.0	29	90	10	91	44	17	5	32	1.70
1222678--1222737	29	2.0	30	93	6	104	43	16	6	33	1.74
1223453--1223511	30	2.0	30	93	3	102	35	3	13	47	1.60
1223590--1223643	21	2.6	21	91	5	83	24	31	18	25	1.97
1223599--1223700	13	8.0	13	67	22	56	26	30	17	25	1.97
1223669--1223812	54	2.7	54	94	1	254	28	28	15	27	1.96
1227029--1227087	29	2.0	29	87	6	84	37	3	13	45	1.60
1230001--1230071	29	2.4	29	90	0	106	42	7	9	40	1.65
1230749--1230802	20	2.7	19	75	8	63	33	31	18	16	1.93
1230749--1230864	21	5.6	21	66	7	58	35	25	18	20	1.96
1230852--1231061	40	5.2	40	82	5	217	39	24	17	18	1.92
1230852--1231073	20	11.0	20	77	10	175	39	23	18	18	1.92
1231068--1231158	20	4.6	20	94	2	148	21	19	23	35	1.96
1231048--1231138	40	2.3	40	86	3	121	25	20	21	31	1.98
1232022--1232075	24	2.2	24	90	0	81	22	18	18	40	1.91
1234593--1234759	33	4.8	33	78	9	190	44	19	21	14	1.85
1234593--1234763	19	9.7	19	70	20	111	45	19	21	14	1.85
1234790--1234848	19	3.4	19	73	22	74	13	22	18	45	1.84
1234769--1234848	33	2.4	33	91	0	124	12	21	20	46	1.83
1234798--1234848	17	3.1	17	69	25	54	13	23	17	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1236328--1236451	42	3.0	40	79	8	97	23	16	37	21	1.93
1236848--1236918	19	3.6	19	84	3	88	47	19	19	12	1.81
1236932--1237064	19	7.2	18	70	21	80	13	16	24	45	1.83
1237112--1237491	94	4.1	94	94	2	640	47	19	12	21	1.82
1239197--1239248	20	2.6	20	79	11	70	42	21	23	13	1.88
1239184--1239307	33	3.5	33	84	7	140	44	20	22	12	1.85
1239184--1239329	19	8.1	19	71	17	105	44	19	22	13	1.85
1239336--1239413	20	3.8	20	78	9	95	12	16	17	52	1.74
1239972--1240165	20	9.6	19	75	9	145	19	16	24	39	1.91
1239972--1240205	60	3.8	59	79	8	220	20	16	24	39	1.92
1239994--1240205	40	5.2	41	84	1	232	20	16	24	38	1.92
1239994--1240227	62	3.8	61	75	10	169	20	16	24	38	1.93
1240214--1240266	20	2.7	20	86	13	74	13	16	24	45	1.83
1244477--1244517	20	2.1	19	86	4	55	48	2	2	46	1.28
1244642--1244666	12	2.1	12	100	0	50	64	0	16	20	1.30
1247610--1247649	17	2.2	20	86	13	59	25	0	2	72	0.97
1247754--1247783	10	3.0	10	100	0	60	10	0	0	90	0.47
1249683--1249757	15	5.0	15	78	0	78	34	4	18	42	1.69
1249688--1249745	30	1.9	30	89	0	89	36	3	17	43	1.66
1249874--1249943	24	2.9	24	77	8	63	25	24	24	25	2.00
1256158--1256210	22	2.4	22	100	0	106	37	7	28	26	1.83
1256508--1256550	22	1.9	22	85	4	59	27	2	6	62	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1256589--1256660	15	4.7	15	85	1	81	31	4	19	44	1.70
1256783--1256841	24	2.5	24	86	2	84	23	15	27	33	1.95
1256839--1256909	24	3.0	24	95	0	124	21	23	21	33	1.97
1256805--1256915	24	4.7	24	83	4	118	22	23	23	30	1.99
1272262--1272294	3	11.0	3	87	12	50	33	0	0	66	0.92
1272258--1272294	11	3.0	13	84	15	60	35	0	0	64	0.94
1275284--1275339	21	2.6	22	80	11	71	25	28	16	30	1.96
1278225--1278269	22	2.2	20	84	8	54	2	20	22	55	1.54
1278601--1278664	3	21.0	3	84	9	85	60	0	0	39	0.97
1280101--1280160	20	3.0	20	97	0	111	35	13	5	46	1.65
1280439--1280485	16	2.7	18	74	16	53	34	12	4	48	1.61
1280616--1280658	21	2.1	21	82	4	52	44	9	4	41	1.57
1283266--1283313	20	2.5	20	86	10	64	31	16	4	47	1.65
1285102--1285144	21	2.0	22	86	13	63	23	16	16	44	1.86
1286288--1286323	17	2.1	17	89	0	54	30	2	8	58	1.42
1291007--1291077	24	3.3	20	78	16	70	38	2	2	56	1.29
1291691--1291760	35	2.0	35	94	0	122	34	21	10	34	1.87
1296184--1296256	26	2.8	26	78	10	71	49	10	16	23	1.77
1296198--1296239	13	3.2	13	77	12	50	45	14	14	26	1.83
1299440--1299479	2	20.0	2	100	0	80	50	0	0	50	1.00
1300676--1300725	26	2.0	25	84	11	66	42	2	38	18	1.61
1302659--1302698	20	2.0	20	85	9	55	42	2	12	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1303200--1303238	14	2.7	15	88	8	62	79	2	0	17	0.84
1305333--1305408	18	4.1	18	83	9	107	25	30	22	22	1.99
1305902--1305960	2	29.5	2	100	0	118	49	0	0	50	1.00
1311407--1311439	17	2.0	17	88	5	50	15	12	3	69	1.30
1319349--1319566	115	1.9	115	84	1	294	38	23	11	25	1.89
1322031--1322371	179	1.9	179	87	1	504	40	12	9	37	1.76
1322033--1322462	179	2.4	179	82	4	465	38	12	10	37	1.78
1326032--1326064	16	2.1	16	100	0	66	57	24	12	6	1.57
1326130--1326204	10	7.7	10	69	21	61	57	21	12	9	1.62
1326134--1326198	16	4.1	16	95	0	121	56	23	12	7	1.61
1326947--1327002	14	4.3	14	80	17	66	53	25	12	8	1.67
1326927--1327001	24	3.1	24	88	3	98	56	21	10	12	1.66
1336748--1336798	19	2.7	19	96	0	93	33	11	23	31	1.91
1337521--1337575	20	2.8	20	88	0	83	27	23	25	23	2.00
1340157--1340227	3	24.0	3	97	2	135	33	0	0	66	0.92
1348305--1348330	13	2.0	13	100	0	52	46	0	23	30	1.53
1350645--1350697	25	2.1	25	82	6	63	69	0	3	26	1.05
1351109--1351133	12	2.1	12	100	0	50	20	0	8	72	1.10
1352128--1352215	44	2.0	44	82	2	106	25	17	12	45	1.83
1352161--1352318	42	3.7	42	77	3	154	20	20	15	43	1.88
1365622--1365684	26	2.4	26	100	0	126	42	20	14	22	1.88
1367685--1367751	32	2.1	32	97	0	125	35	26	8	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1377465--1377518	26	2.1	25	89	3	81	35	31	14	18	1.91
1377459--1377512	26	2.1	26	92	0	90	38	27	14	18	1.90
1384213--1384253	20	2.1	20	90	4	66	48	7	9	34	1.64
1386502--1386560	27	2.2	27	93	0	100	45	20	11	22	1.83
1387513--1387572	29	2.1	29	100	0	120	18	25	23	33	1.97
1390776--1390841	24	2.8	24	90	0	96	19	22	25	31	1.98
1399336--1399383	10	5.0	10	87	7	73	12	0	79	8	0.94
1399367--1399404	6	6.7	6	85	11	53	26	0	73	0	0.83
1400083--1400223	6	23.0	6	76	12	108	34	0	63	2	1.09
1401030--1401183	45	3.4	45	79	6	177	33	8	18	39	1.81
1401341--1401661	58	5.6	56	71	14	169	37	5	9	46	1.61
1401827--1401998	39	4.4	38	78	5	150	38	6	13	40	1.71
1402040--1402216	39	4.5	39	75	11	110	42	4	12	40	1.63
1402110--1402318	39	5.1	39	73	15	150	37	5	13	43	1.67
1404214--1404269	24	2.3	24	96	0	103	26	17	16	39	1.91
1408651--1408677	14	1.9	14	100	0	54	51	0	3	44	1.19
1408693--1408754	19	3.1	20	73	13	65	46	0	3	50	1.17
1408718--1408762	21	2.1	22	84	12	58	53	0	2	44	1.13
1409074--1409193	42	2.9	42	77	7	111	25	11	44	18	1.84
1409763--1409897	51	2.6	51	81	2	164	21	14	15	48	1.81
1411802--1411964	65	2.5	64	82	3	202	26	15	26	31	1.96
1411912--1411962	19	2.7	19	85	8	70	25	15	35	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1412610--1412663	8	6.5	8	79	8	54	51	31	3	12	1.57
1418412--1418451	21	1.9	21	85	10	55	35	10	2	52	1.48
1426192--1426235	22	2.0	23	86	4	63	45	0	0	54	0.99
1426184--1426264	31	2.6	32	79	16	89	46	1	0	51	1.08
1426200--1426309	52	2.1	52	79	12	120	46	1	0	50	1.18
1426280--1426351	27	2.4	32	71	23	75	45	0	1	52	1.09
1426287--1426349	28	2.2	28	83	13	85	47	0	1	50	1.10
1426354--1426397	22	2.0	22	81	4	52	52	4	2	40	1.34
1426487--1426541	30	1.9	27	82	10	65	60	0	0	40	0.97
1426742--1426784	14	2.9	15	82	3	61	32	20	0	46	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11