genome.fa.s8933.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008933.1 Hibiscus syriacus cultivar Beakdansim tig00112249_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2862162

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  1  of  14  ( 1568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580--2264	841	2.0	842	99	0	3336	35	13	19	31	1.91
8866--8909	21	2.1	21	100	0	88	18	13	34	34	1.90
8936--8970	17	1.9	19	88	11	56	37	5	0	57	1.23
9446--9641	65	2.8	71	77	12	237	35	26	15	22	1.94
9885--9931	17	2.7	17	90	3	67	40	10	23	25	1.87
12259--12345	20	4.3	20	97	0	156	48	4	21	25	1.69
15971--16026	21	2.7	21	97	0	103	25	30	21	23	1.99
16058--16281	64	3.5	64	81	7	208	31	21	19	27	1.97
16791--17043	31	8.2	31	95	0	443	39	12	15	33	1.84
16935--17018	15	5.5	15	64	25	50	39	14	15	30	1.87
17952--18262	43	7.3	42	72	10	136	52	6	16	24	1.66
17953--18192	83	2.8	84	81	5	227	53	5	17	23	1.65
21208--21237	2	15.0	2	100	0	60	50	0	0	50	1.00
25792--26156	139	2.6	138	87	5	515	26	20	19	33	1.96
26676--26716	21	1.9	22	85	5	57	17	19	36	26	1.94
27360--27395	17	2.1	17	90	10	56	52	8	0	38	1.32
28458--28549	30	3.1	30	84	6	100	59	0	0	40	0.97
28801--28921	60	2.0	60	87	3	172	23	38	23	14	1.91
29263--29411	56	2.6	56	78	8	151	46	6	15	31	1.70
29293--29411	57	2.1	57	84	4	152	45	5	13	35	1.68
35566--35606	15	2.7	15	80	0	55	53	0	0	46	1.00
36686--36729	22	2.0	22	82	8	54	36	9	0	54	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38815--39011	99	2.0	100	89	5	301	49	14	12	23	1.77
39639--39693	21	2.6	21	94	0	92	20	21	27	30	1.98
39620--39705	21	4.1	21	83	1	84	22	22	22	33	1.97
39754--39804	21	2.4	21	86	0	66	21	21	25	31	1.98
39599--39894	111	2.7	111	94	0	511	23	23	20	31	1.98
39861--40004	21	7.0	21	70	13	93	20	20	24	35	1.96
39867--40001	42	3.3	42	91	2	220	19	19	25	36	1.95
40722--40856	21	6.4	21	76	16	145	38	20	19	21	1.94
40722--40856	63	2.1	63	95	0	243	38	20	19	21	1.94
40785--40875	42	2.2	42	93	0	155	37	23	18	20	1.94
40722--40881	63	2.5	62	89	4	214	37	21	20	21	1.94
40722--40875	21	7.3	20	77	13	125	37	21	19	21	1.94
43688--43754	16	4.3	16	84	3	93	11	10	14	62	1.54
44757--44831	35	2.1	37	85	5	100	41	14	13	30	1.84
45128--45173	24	2.0	23	83	12	58	19	6	4	69	1.28
45170--45304	37	3.5	37	77	18	123	28	2	1	67	1.11
45254--45308	21	2.7	19	75	20	58	23	1	0	74	0.91
45326--45351	9	2.9	9	100	0	52	0	19	0	80	0.71
45458--45487	15	2.0	15	100	0	60	20	20	0	60	1.37
48474--48535	23	2.7	22	80	9	72	79	6	14	0	0.93
48474--48543	20	3.3	20	82	9	68	78	5	14	1	1.00
49152--49202	22	2.3	22	96	0	93	35	27	11	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49599--49634	18	2.0	18	94	0	63	16	8	33	41	1.78
50198--50355	36	4.3	36	94	2	271	25	20	12	41	1.87
50308--50492	67	2.8	66	80	8	196	31	19	11	37	1.87
50235--50492	72	3.8	66	78	8	234	30	19	12	37	1.88
50373--50591	102	2.1	102	94	0	384	30	20	11	36	1.89
50440--50526	37	2.4	37	86	1	113	25	20	12	41	1.88
50476--50656	65	2.8	65	93	0	308	30	20	12	36	1.89
50115--50691	167	3.4	167	84	7	756	29	19	12	38	1.89
50562--50797	104	2.3	104	78	3	237	26	19	14	39	1.90
50764--50835	37	1.9	37	82	0	90	26	22	11	40	1.87
51118--52077	203	4.6	204	84	5	1072	32	24	21	21	1.98
51105--52080	109	9.4	105	79	6	940	32	24	21	21	1.98
52541--52614	35	2.1	36	89	2	114	39	14	14	31	1.87
52911--52970	22	2.8	21	76	19	61	23	5	5	66	1.31
52921--52984	24	2.8	23	81	6	76	25	4	4	65	1.31
52976--53094	37	3.0	39	78	16	104	29	2	0	68	1.03
52991--53145	27	5.8	27	68	23	80	22	4	0	72	1.07
53016--53090	35	2.1	37	87	9	111	25	2	0	72	0.98
53015--53087	18	3.9	18	75	21	71	26	2	0	71	1.00
53039--53144	49	2.2	48	80	17	121	18	4	0	75	1.03
53015--53158	29	5.0	29	70	18	77	21	5	0	72	1.10
53154--53197	15	2.9	15	80	9	54	15	6	4	72	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53232--53261	15	2.0	15	93	0	51	16	20	0	63	1.31
53600--53692	42	2.2	42	92	0	150	22	16	12	48	1.80
53893--53952	23	2.4	25	76	21	63	48	1	1	48	1.21
53924--53970	22	2.1	23	84	4	60	44	4	0	51	1.21
53928--53976	22	2.2	22	77	0	53	48	4	0	46	1.20
54049--54136	27	3.2	26	78	12	79	47	1	1	50	1.16
54496--54529	14	2.4	14	90	0	50	41	11	5	41	1.66
55852--55901	2	25.0	2	100	0	100	50	0	0	50	1.00
57624--57672	22	2.2	22	96	3	89	55	8	0	36	1.30
57739--57792	27	2.0	27	81	0	63	53	1	3	40	1.29
57810--57930	37	3.2	36	71	21	111	42	9	4	42	1.58
57806--57955	78	1.9	79	90	1	239	42	8	4	45	1.54
65425--65452	2	14.0	2	100	0	56	50	0	0	50	1.00
65657--65724	2	34.0	2	100	0	136	50	0	0	50	1.00
70251--70384	32	4.2	32	85	0	178	39	22	6	31	1.80
71040--71082	22	2.0	22	100	0	86	32	9	6	51	1.61
71039--71092	22	2.4	22	87	3	81	33	7	5	53	1.52
92287--92329	20	2.2	20	86	0	59	37	16	11	34	1.85
95091--95199	27	4.0	25	71	19	67	39	1	4	54	1.32
95205--95276	37	1.9	38	85	2	101	36	5	1	56	1.31
95244--95344	30	3.5	30	76	8	84	36	4	1	56	1.32
95349--95403	21	2.7	21	81	13	71	56	1	0	41	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95387--95475	27	3.4	26	76	16	94	52	1	1	44	1.15
97586--97731	16	9.1	16	68	11	84	53	27	10	8	1.64
97586--97731	32	4.6	31	74	10	107	53	27	10	8	1.64
98196--98292	46	2.1	46	88	0	140	42	28	12	16	1.84
100190--100347	21	7.8	20	70	7	77	37	24	17	19	1.93
100315--100625	20	15.5	20	81	6	79	34	26	19	20	1.96
100315--100704	40	9.7	40	87	2	439	35	25	18	20	1.95
100353--100704	20	17.6	19	85	5	398	34	25	18	21	1.96
101380--101426	24	2.0	24	87	8	69	25	14	21	38	1.92
101601--101625	12	2.1	12	100	0	50	72	0	28	0	0.86
103894--104166	19	15.4	19	81	15	345	46	17	21	13	1.83
103894--104188	33	8.5	33	77	17	133	46	17	21	14	1.84
103925--104188	109	2.5	105	91	6	451	46	17	22	14	1.84
103925--104188	52	5.0	52	93	5	447	46	17	22	14	1.84
104195--104277	20	4.6	19	81	15	113	14	24	18	43	1.87
104384--104420	14	2.6	14	91	0	65	45	21	0	32	1.52
106363--106419	14	3.7	14	77	20	60	45	22	21	10	1.82
106344--106436	33	2.8	33	95	0	168	47	21	20	10	1.80
106307--106441	19	7.6	19	76	16	128	45	23	19	11	1.82
106437--106527	33	2.8	33	94	1	157	7	18	28	45	1.77
106453--106508	14	3.7	14	72	22	51	7	19	30	42	1.78
106607--106981	92	4.1	93	96	3	699	46	18	12	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106607--106981	181	2.0	185	96	3	697	46	18	12	21	1.82
108683--108772	14	5.7	14	74	23	81	42	23	25	8	1.83
108675--108789	33	3.5	33	95	0	212	45	20	24	9	1.81
108682--108794	19	6.8	18	72	23	88	43	22	24	9	1.83
108806--108860	14	3.6	14	73	21	56	9	25	23	41	1.83
108790--108860	33	2.2	33	94	0	124	8	22	25	43	1.81
108801--108882	33	2.5	33	89	2	119	9	25	21	42	1.84
108813--108901	20	4.8	20	72	19	75	12	24	19	43	1.85
108979--109049	33	2.2	33	92	0	115	47	18	22	11	1.80
109231--109285	22	2.5	22	81	0	74	20	16	40	23	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14