genome.fa.s8933.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008933.1 Hibiscus syriacus cultivar Beakdansim tig00112249_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2862162

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263364--264277	213	4.3	212	87	4	1184	40	23	13	22	1.89
263257--264277	425	2.4	423	85	5	1329	39	24	14	21	1.90
264857--264914	21	2.8	21	97	0	107	39	3	0	56	1.16
267040--267203	82	2.0	83	82	10	203	25	15	7	52	1.68
267042--267364	43	7.6	43	73	15	208	24	18	7	50	1.71
268382--268522	72	2.0	72	84	2	185	32	17	15	34	1.91
279984--280120	45	2.8	49	78	11	156	21	11	24	42	1.86
281307--281340	11	3.2	11	91	4	52	2	14	11	70	1.27
284319--284365	16	2.9	16	93	0	76	29	0	10	59	1.31
285760--285819	30	2.0	30	93	0	102	31	5	18	45	1.71
286000--286075	21	3.7	21	91	3	127	21	32	17	28	1.95
289305--289364	30	2.0	30	96	0	111	30	5	20	45	1.72
289446--289503	21	2.8	21	89	0	89	22	37	18	20	1.94
289490--289545	20	2.6	22	77	5	62	28	26	16	28	1.97
289566--289620	20	2.7	21	88	5	85	21	32	16	29	1.95
289975--290044	34	2.1	32	84	5	86	31	15	28	24	1.96
290791--290828	20	1.9	20	89	10	60	36	0	10	52	1.36
301830--301990	4	39.2	4	70	11	85	65	4	4	24	1.31
301788--301825	19	2.0	19	89	0	58	63	10	5	21	1.46
301835--301973	19	7.6	18	72	15	83	64	3	5	25	1.32
301831--301985	23	6.9	22	74	7	116	65	4	5	24	1.32
301877--301942	27	2.4	27	80	5	80	65	4	4	25	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304396--304447	24	2.2	24	100	0	104	28	3	0	67	1.08
304975--305047	30	2.4	31	77	13	96	32	30	13	23	1.93
307696--307739	21	2.1	21	86	0	61	18	27	15	38	1.91
307776--307831	20	2.8	20	91	0	94	37	17	19	25	1.94
309125--309168	12	3.4	12	79	14	52	59	0	0	40	0.98
309125--309170	13	3.5	13	80	11	58	58	0	0	41	0.98
310026--310067	15	2.9	14	89	7	57	0	21	2	76	0.90
310026--310073	20	2.3	20	82	13	62	0	22	4	72	1.01
310524--310580	3	19.3	3	92	3	98	64	0	0	35	0.93
310829--311826	229	4.4	225	90	4	1258	28	19	14	37	1.91
310831--311807	113	8.6	113	89	3	1284	28	19	14	37	1.91
312559--313030	83	5.7	83	95	2	862	36	23	13	27	1.92
312559--313030	246	1.9	248	96	1	869	36	23	13	27	1.92
313852--313934	16	5.6	16	73	21	65	3	18	0	78	0.90
313852--313918	19	3.6	19	76	11	66	2	17	0	79	0.86
313852--313934	11	7.8	11	75	17	70	3	18	0	78	0.90
313877--313934	18	3.3	18	81	16	77	5	15	0	79	0.90
313852--313937	27	3.1	27	86	3	109	3	18	0	77	0.90
323859--324167	154	2.0	155	99	0	611	34	16	16	33	1.91
324489--324565	28	2.8	26	76	18	77	64	1	5	28	1.22
326056--326157	55	1.9	55	92	8	174	19	13	44	22	1.86
326373--326420	3	16.0	3	91	8	80	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327430--327496	20	3.3	20	87	0	89	34	20	19	25	1.96
327544--327592	20	2.5	20	79	0	62	22	20	22	34	1.97
327618--328367	377	2.0	371	96	1	1383	29	15	16	39	1.89
328447--328545	21	4.7	21	75	3	92	22	35	20	22	1.96
328444--328554	42	2.6	42	74	5	116	20	36	18	23	1.95
329871--329906	14	2.6	14	90	0	54	30	0	22	47	1.52
330011--330083	33	2.2	34	92	2	121	45	19	23	12	1.84
330093--330312	19	11.8	19	78	13	154	15	21	19	42	1.89
330093--330217	19	6.8	19	87	9	188	14	21	17	46	1.84
330222--330307	40	2.2	40	89	4	129	17	22	24	36	1.95
332726--332779	24	2.2	24	93	0	90	40	20	18	20	1.91
333633--333846	20	10.6	20	85	2	259	23	18	19	38	1.93
333638--333846	40	5.2	40	88	1	285	23	18	20	38	1.93
333633--333846	60	3.5	60	89	1	304	23	18	19	38	1.93
333843--333888	21	2.2	21	88	0	65	36	17	28	17	1.92
336098--336135	20	1.9	20	89	10	60	55	0	0	44	0.99
337100--337207	48	2.2	48	73	0	108	25	9	12	51	1.70
343182--343335	60	2.6	61	81	8	165	37	6	24	32	1.81
344496--344578	41	2.0	40	81	9	96	42	19	7	31	1.78
348472--348512	2	20.5	2	94	0	73	48	0	2	48	1.14
348936--348988	6	8.8	6	87	0	79	49	11	1	37	1.50
352940--353002	30	2.1	30	87	0	90	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353557--353617	28	2.2	27	85	11	79	45	9	8	36	1.67
353556--353616	27	2.3	26	83	13	79	44	9	8	37	1.68
353557--353617	29	2.2	27	82	8	79	45	9	8	36	1.67
353569--353627	27	2.1	29	84	6	77	47	10	6	35	1.64
355717--355751	3	11.7	3	88	11	54	65	0	0	34	0.93
355714--355755	13	3.5	13	87	12	63	64	0	0	35	0.94
356394--356430	17	2.2	17	100	0	74	40	24	13	21	1.89
357231--357305	38	2.0	37	84	5	98	48	4	1	46	1.29
358031--358122	30	3.1	29	71	14	80	54	8	15	21	1.68
358090--358239	30	5.1	29	71	13	94	61	6	14	18	1.53
358031--358188	57	2.7	58	79	7	160	56	6	15	20	1.62
361161--361198	20	1.9	20	88	0	58	55	7	7	28	1.57
373534--373574	2	20.5	2	100	0	82	51	0	0	48	1.00
373622--373766	75	1.9	75	83	8	188	25	16	13	44	1.84
378514--378544	15	2.1	15	93	0	53	70	0	0	29	0.87
379427--379513	31	2.8	30	83	10	104	44	0	3	51	1.18
379460--379512	21	2.6	21	82	11	67	45	0	1	52	1.11
381780--381805	11	2.4	11	100	0	52	0	30	53	15	1.42
385478--385836	180	2.0	179	98	1	693	22	15	17	44	1.86
392066--392130	28	2.4	26	76	7	67	55	0	0	44	0.99
392095--392148	15	3.3	15	82	10	54	55	0	0	44	0.99
392095--392129	18	1.9	18	100	0	70	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392408--392455	25	1.9	25	86	0	69	27	18	20	33	1.96
397500--397540	21	2.0	21	85	0	55	43	34	12	9	1.75
401492--401577	37	2.3	36	80	8	91	53	2	1	43	1.21
401993--402119	68	1.9	65	90	4	200	44	16	11	27	1.83
401993--402134	68	2.1	66	87	5	196	46	16	10	26	1.80
403370--403429	26	2.2	25	76	21	59	30	1	3	65	1.19
414385--414425	21	1.9	22	90	5	66	39	17	19	24	1.92
414455--414492	20	1.9	20	94	0	67	31	34	10	23	1.89
416538--416622	26	3.3	26	88	0	125	3	37	11	47	1.58
420307--420344	2	19.0	2	100	0	76	50	0	0	50	1.00
423389--423421	15	2.2	15	94	0	57	33	0	0	66	0.92
425601--425631	2	15.5	2	100	0	62	48	0	0	51	1.00
425999--426184	58	3.2	58	78	6	162	38	5	23	32	1.79
427921--428040	50	2.4	50	97	0	222	36	13	12	37	1.82
437238--437565	142	2.4	132	81	7	334	44	8	7	39	1.63
438918--438954	3	12.0	3	88	5	56	62	0	0	37	0.96
438906--438947	16	2.7	16	96	3	77	57	0	0	42	0.99
442029--442058	14	2.1	14	87	0	51	43	13	6	36	1.70
442168--442223	26	2.0	27	83	16	71	48	1	0	50	1.11
442324--442366	21	2.0	22	86	9	61	44	0	2	53	1.13
442488--442543	23	2.4	23	85	5	69	48	3	0	48	1.19
442533--442579	22	2.1	23	88	4	69	53	2	0	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442541--442584	22	2.0	22	82	8	54	54	2	0	43	1.12
443804--443828	13	1.9	13	100	0	50	52	0	0	48	1.00
444560--445055	20	24.2	20	79	13	476	38	25	19	16	1.92
444560--445055	62	8.1	60	83	7	452	38	25	19	16	1.92
444622--445048	42	10.4	39	84	12	404	36	26	18	17	1.94
444560--445048	42	11.9	39	81	11	393	37	25	19	16	1.93
445151--445243	6	15.5	6	100	0	186	33	50	16	0	1.45
445732--445791	5	11.6	5	98	1	102	0	20	56	23	1.42
445887--446194	20	15.1	20	73	12	216	16	18	25	39	1.91
445887--446072	62	3.0	60	89	7	259	15	19	25	39	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14