genome.fa.s8933.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008933.1 Hibiscus syriacus cultivar Beakdansim tig00112249_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2862162

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109431--109623	20	9.6	20	82	5	219	19	19	25	35	1.95
109431--109623	60	3.2	60	83	0	251	19	19	25	35	1.95
111757--111823	31	2.2	31	88	0	98	29	8	10	50	1.67
114722--114746	2	12.5	2	100	0	50	48	0	0	52	1.00
115227--115456	105	2.2	104	80	3	237	28	13	20	37	1.90
120592--120668	21	3.7	21	83	0	100	33	19	14	32	1.92
121645--121713	30	2.2	30	85	15	95	34	5	17	42	1.73
121654--121713	30	2.0	30	93	6	104	33	6	16	43	1.74
121795--121893	21	4.7	21	80	14	123	24	34	15	26	1.94
123363--123391	14	2.0	15	93	6	51	55	0	37	6	1.27
125180--125248	30	2.2	30	85	15	95	34	5	17	42	1.73
125189--125248	30	2.0	30	93	6	104	33	6	16	43	1.74
125328--125385	21	2.8	21	97	0	107	22	36	17	24	1.95
125448--125521	20	3.7	20	87	7	89	22	28	18	29	1.98
132596--133380	395	2.0	394	90	3	1247	34	19	10	35	1.86
132592--133380	197	4.0	197	90	3	1178	34	19	10	35	1.86
133600--133638	20	2.0	20	84	0	51	38	2	5	53	1.37
142905--142968	26	2.5	26	85	9	87	40	3	0	56	1.15
143091--143151	31	2.0	31	83	6	79	59	0	6	34	1.24
143218--143247	10	3.0	10	95	0	51	46	0	0	53	1.00
143247--143311	25	2.8	23	79	18	73	60	1	1	36	1.16
143698--143757	31	1.9	31	86	0	84	46	11	11	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144150--144222	36	2.0	36	97	0	137	36	12	10	39	1.78
144239--144264	2	13.0	2	100	0	52	50	0	0	50	1.00
144735--144803	32	2.2	32	97	0	129	31	17	17	33	1.93
148608--148648	8	5.2	8	82	5	57	34	0	29	36	1.58
148719--149597	128	6.9	128	93	2	1504	22	24	20	32	1.98
148719--149597	383	2.3	383	95	1	1597	22	24	20	32	1.98
149997--150096	34	3.0	33	80	2	119	38	2	5	55	1.33
150016--150093	39	2.0	39	80	12	88	34	0	5	60	1.19
150616--150709	21	4.5	21	86	5	111	20	24	35	20	1.96
150713--150760	21	2.3	21	85	0	60	22	12	39	25	1.89
150616--150772	84	1.9	84	81	5	192	21	21	36	21	1.95
152484--152562	32	2.4	33	79	10	81	60	1	0	37	1.05
152484--152564	35	2.4	34	81	8	103	61	1	0	37	1.04
152517--152596	34	2.3	34	81	12	92	65	5	0	30	1.14
159810--160087	84	3.4	84	86	7	415	31	7	25	34	1.85
159820--160066	80	3.1	78	87	7	368	31	8	25	34	1.86
168136--168189	17	2.8	20	73	26	62	59	3	1	35	1.26
168140--168183	16	2.8	15	80	10	52	56	4	2	36	1.32
170135--170194	2	30.0	2	100	0	120	50	0	0	50	1.00
170301--170352	19	2.7	19	87	0	77	73	7	3	15	1.21
172042--172180	74	1.9	73	83	4	181	22	12	8	56	1.64
174216--174275	13	4.7	13	76	12	52	5	1	25	68	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174216--174270	19	2.9	19	81	10	76	5	0	25	69	1.10
174249--174334	23	3.7	23	77	9	93	9	8	20	61	1.52
174267--174344	10	7.1	10	70	18	57	10	10	19	60	1.57
174216--174280	19	3.5	20	76	19	68	6	1	24	67	1.22
174304--174343	20	2.0	20	95	0	71	7	15	22	55	1.65
174351--174429	31	2.5	31	93	0	140	43	18	13	24	1.87
175586--175620	18	1.9	18	88	0	52	34	0	0	65	0.93
176989--177027	14	3.0	13	88	7	53	35	15	23	25	1.94
179101--179258	20	7.6	20	81	9	88	37	25	18	17	1.93
179145--179258	22	5.4	22	90	8	182	34	28	18	18	1.95
179145--179258	42	2.7	42	95	0	201	34	28	18	18	1.95
179369--179412	6	7.7	6	92	7	74	31	50	18	0	1.47
180083--180149	6	11.2	6	100	0	134	0	16	49	34	1.46
180261--180336	20	3.7	20	88	11	118	17	19	27	35	1.94
180261--180378	22	5.4	22	83	13	138	18	20	27	33	1.96
183147--183188	20	2.0	21	82	13	52	42	0	2	54	1.13
183781--183826	2	23.0	2	100	0	92	50	0	0	50	1.00
184512--184622	20	5.5	20	79	6	107	33	26	18	22	1.96
184505--184636	61	2.2	61	87	0	183	37	25	15	21	1.93
184810--184853	22	2.0	22	95	0	79	20	45	15	18	1.85
185130--185188	20	3.0	20	82	0	64	18	18	20	42	1.90
185325--185379	25	2.2	24	78	15	58	20	9	18	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186508--186552	18	2.5	18	88	0	72	26	44	15	13	1.83
187028--187094	20	3.4	20	77	2	64	38	22	22	16	1.92
187067--187158	33	2.8	33	93	0	157	47	19	18	14	1.82
187067--187161	19	5.5	19	67	23	75	46	20	18	14	1.84
187083--187141	14	3.9	14	72	20	55	49	22	16	11	1.78
187175--187265	14	5.9	14	74	20	83	10	17	23	48	1.79
187170--187281	33	3.4	33	97	1	208	11	18	22	47	1.81
187266--187309	20	2.3	19	80	7	52	18	20	20	40	1.91
187275--187321	20	2.3	20	96	0	85	14	17	25	42	1.87
187352--187420	25	2.6	28	73	19	76	21	10	15	52	1.73
187694--187762	21	3.3	20	75	13	68	23	40	15	20	1.91
187686--187804	42	2.9	41	82	2	121	22	39	16	21	1.92
189190--189225	14	2.6	14	90	0	54	30	0	22	47	1.52
189357--189421	19	3.4	19	97	0	121	49	16	18	15	1.80
189344--189440	38	2.8	33	81	14	122	47	18	20	13	1.82
189459--189515	19	2.9	20	89	5	89	17	22	22	36	1.94
189871--189935	19	3.7	19	84	15	95	46	18	21	13	1.84
189954--190030	20	3.9	20	93	3	129	15	22	24	37	1.93
189954--190030	39	2.0	40	92	2	129	15	22	24	37	1.93
189200--190229	515	2.0	504	92	4	1730	34	15	18	30	1.93
192893--192940	20	2.4	20	96	0	87	25	20	31	22	1.98
192930--192981	21	2.5	21	87	3	70	15	23	21	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193506--193553	20	2.3	22	85	7	64	56	2	0	41	1.11
195972--196034	27	2.5	25	83	16	85	42	4	0	52	1.22
196190--196264	31	2.4	31	86	0	96	44	16	13	26	1.84
203431--203472	21	2.0	21	100	0	84	42	0	28	28	1.56
203462--203504	2	21.5	2	100	0	86	51	0	0	48	1.00
204995--205038	22	2.0	22	82	4	54	59	2	4	34	1.30
207563--207601	3	13.7	3	94	5	64	30	0	0	69	0.89
217274--217360	30	2.9	30	80	1	111	35	14	20	28	1.93
219345--219380	19	1.9	18	88	5	54	41	5	0	52	1.24
220099--220157	27	2.2	26	82	8	73	32	5	1	61	1.28
220981--221009	14	2.1	14	100	0	58	41	6	6	44	1.58
226339--226391	23	2.3	23	86	0	70	11	18	18	50	1.76
227629--227658	3	10.0	3	100	0	60	33	0	0	66	0.92
232034--232063	2	15.0	2	100	0	60	0	50	0	50	1.00
232411--232456	24	2.0	24	83	8	60	26	19	8	45	1.79
232642--232668	12	2.2	12	100	0	54	40	0	0	59	0.98
234936--234968	15	2.1	17	88	11	52	69	0	0	30	0.88
239677--239726	2	25.0	2	100	0	100	50	0	0	50	1.00
247750--247807	22	2.6	22	94	0	107	12	22	22	43	1.86
248992--249057	2	33.0	2	100	0	132	50	0	0	50	1.00
252390--252454	30	2.2	29	83	2	76	49	13	3	33	1.58
254487--254533	25	1.9	24	95	4	85	17	8	4	70	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255166--255304	10	15.3	9	68	20	58	60	5	2	32	1.30
255171--255353	46	3.8	47	67	21	121	60	5	3	30	1.37
255245--255293	9	5.6	9	83	13	50	61	6	0	32	1.21
255253--255307	26	2.1	26	87	12	78	67	1	0	30	1.01
255330--255379	21	2.5	20	81	9	66	60	6	2	32	1.32
255861--255955	3	31.7	3	95	0	127	25	0	7	67	1.16
257738--257775	3	12.7	3	100	0	76	65	0	0	34	0.93
261206--261265	30	2.0	30	100	0	120	16	23	16	43	1.87
262016--262040	10	2.5	10	100	0	50	44	8	12	36	1.71
262714--262823	44	2.5	44	93	0	193	38	22	13	25	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14