genome.fa.s8933.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008933.1 Hibiscus syriacus cultivar Beakdansim tig00112249_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2862162

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  5  of  14  ( 1568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
652492--652544	14	3.7	14	84	2	61	52	7	15	24	1.68
656295--656382	3	28.7	3	81	4	95	57	0	2	39	1.11
659627--659652	5	5.2	5	100	0	52	23	57	19	0	1.40
664009--664060	23	2.3	23	90	6	81	32	15	19	32	1.93
664939--665031	45	2.1	45	87	0	132	54	5	19	20	1.63
664915--665081	43	3.9	43	80	8	171	49	4	22	24	1.67
664915--665074	88	1.8	86	82	2	203	50	4	21	23	1.66
665053--665091	15	2.6	15	95	0	69	46	0	23	30	1.53
668073--668109	12	3.1	12	100	0	74	56	8	18	16	1.64
668075--668109	18	1.9	18	88	0	52	57	8	17	17	1.64
673976--674059	29	2.8	29	71	7	69	35	19	4	40	1.72
682548--682585	2	19.0	2	100	0	76	50	0	0	50	1.00
695708--695741	18	1.9	17	88	5	50	17	0	14	67	1.23
700471--700649	88	2.0	90	94	4	319	34	15	14	35	1.88
703974--704056	43	1.9	43	100	0	166	51	13	19	15	1.75
708539--708616	35	2.2	35	97	0	147	43	17	8	29	1.80
711029--711252	64	3.5	63	81	7	206	32	20	20	25	1.98
711548--711597	24	2.1	24	85	7	66	34	2	22	42	1.65
711563--711609	12	3.9	12	94	0	76	36	2	23	38	1.67
711754--711800	15	3.1	15	100	0	94	14	19	31	34	1.92
717992--718215	64	3.5	63	81	7	206	32	20	20	25	1.98
718524--718559	12	3.0	12	87	0	54	36	5	22	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718704--718750	15	3.1	15	100	0	94	14	19	31	34	1.92
731864--731983	62	1.9	62	87	0	177	37	17	17	27	1.92
732001--732062	30	2.1	30	100	0	124	41	9	9	38	1.71
734863--734905	18	2.4	18	100	0	86	34	25	9	30	1.87
735165--735246	43	1.9	43	94	0	146	45	9	12	32	1.74
740602--740635	16	2.1	16	94	0	59	32	26	8	32	1.87
742531--742557	14	1.9	14	100	0	54	74	0	7	18	1.05
742552--742585	14	2.4	14	85	5	50	73	2	8	14	1.19
743860--743926	23	2.9	22	86	8	89	22	20	25	31	1.98
743869--743926	23	2.5	23	97	0	107	22	24	24	29	1.99
747193--747245	27	2.0	26	85	7	72	62	0	5	32	1.19
747889--747949	24	2.5	24	94	0	104	8	4	31	55	1.50
748834--748861	13	2.2	13	100	0	56	21	7	0	71	1.09
752380--752404	13	1.9	13	100	0	50	44	24	8	24	1.80
752776--752819	13	3.3	13	76	17	54	22	22	29	25	1.99
759044--759077	17	2.0	17	100	0	68	41	11	11	35	1.78
759867--759962	22	4.5	22	84	6	128	15	23	31	29	1.96
766782--766895	22	5.2	22	82	0	147	16	21	28	32	1.96
766786--766895	44	2.5	44	90	0	166	17	21	29	31	1.96
770720--770762	19	2.3	19	95	0	77	34	13	25	25	1.93
773217--773257	16	2.5	17	76	11	50	70	7	19	2	1.22
777908--778014	24	4.5	24	72	0	88	48	16	13	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777908--778016	48	2.3	48	78	0	128	48	16	13	21	1.80
779151--779184	18	1.9	18	88	5	52	29	20	0	50	1.49
780466--780512	18	2.6	18	90	6	69	10	21	46	21	1.81
799518--799700	82	2.3	79	79	10	196	34	19	10	34	1.87
800954--801005	7	7.3	7	75	12	52	69	0	5	25	1.10
802747--802809	27	2.4	27	86	7	85	38	25	11	25	1.89
808858--808912	25	2.2	25	100	0	110	18	3	32	45	1.67
820346--820431	38	2.2	37	80	13	93	58	3	1	37	1.23
821085--821164	39	2.1	39	100	0	160	30	11	10	48	1.71
821144--821198	2	28.0	2	87	10	78	45	3	0	50	1.19
821212--821315	34	2.9	35	78	12	97	41	1	9	47	1.47
821300--821439	61	2.2	63	81	12	164	41	5	7	45	1.55
821389--821555	37	4.5	38	83	9	204	47	1	7	43	1.43
821394--821534	75	1.9	75	91	4	230	47	1	9	41	1.44
821673--821712	19	2.2	18	90	4	62	22	7	0	70	1.12
825070--825094	13	1.9	13	100	0	50	56	0	0	44	0.99
838283--838520	117	2.0	120	96	3	446	28	24	23	22	1.99
843109--843160	27	1.9	27	100	0	104	32	17	7	42	1.77
845576--846420	427	2.0	420	97	1	1602	29	13	20	36	1.91
847438--847501	18	3.6	18	68	8	58	29	26	25	18	1.98
847457--847517	18	3.4	18	74	17	63	29	26	26	18	1.98
847436--847532	36	2.7	36	90	0	140	30	22	25	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
847315--847692	207	1.8	207	82	1	488	27	18	29	24	1.98
861075--861130	24	2.2	26	87	9	80	16	28	32	23	1.96
861666--861726	25	2.4	25	94	0	104	11	26	13	49	1.75
866400--866439	2	20.0	2	94	0	71	47	0	0	52	1.00
867107--867282	50	3.4	50	72	7	131	36	9	9	44	1.68
867302--867470	59	2.8	60	81	7	182	30	22	5	41	1.76
867629--867765	61	2.2	61	83	5	161	40	4	18	36	1.71
867814--868116	88	3.4	87	82	4	333	38	13	16	31	1.87
870268--870304	16	2.2	17	90	4	58	29	0	0	70	0.88
874189--874213	12	2.1	12	100	0	50	52	0	0	48	1.00
877261--877332	31	2.3	31	87	0	99	40	5	8	45	1.57
882090--882149	28	2.1	28	100	0	120	45	13	15	26	1.83
882853--882911	27	2.2	27	90	6	93	28	11	27	32	1.92
887799--887832	16	2.1	16	88	0	50	50	0	2	47	1.16
887874--887908	17	1.9	19	88	11	56	25	2	5	65	1.28
887984--888047	28	2.3	27	78	7	65	51	3	1	43	1.26
888370--888613	130	1.9	129	93	0	425	36	12	14	36	1.85
889008--889083	35	2.2	35	92	0	125	35	1	23	39	1.63
891593--891695	31	3.3	31	93	0	161	19	12	14	53	1.72
891595--891716	31	3.7	33	84	9	144	20	11	14	53	1.72
892776--892856	34	2.4	34	75	4	83	13	14	22	49	1.78
892789--892840	24	2.2	24	86	6	70	9	15	28	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
893937--893997	16	3.8	16	84	0	86	8	13	21	57	1.62
894066--894096	16	1.9	16	100	0	62	6	12	22	58	1.58
895310--895376	26	2.6	26	86	9	84	47	23	7	20	1.75
896408--896606	60	3.3	59	76	9	188	21	20	24	34	1.97
900123--900175	26	2.0	26	82	13	65	32	15	24	28	1.95
904400--904446	23	2.0	23	87	0	67	61	10	2	25	1.39
904400--904438	12	3.3	12	85	7	53	61	10	2	25	1.41
904863--904917	22	2.5	22	93	0	101	18	41	23	16	1.89
906135--906201	23	2.9	23	82	12	77	49	0	0	50	1.00
906149--906208	11	5.5	11	71	11	52	46	0	0	53	1.00
906152--906215	22	3.0	22	82	8	69	46	0	0	53	1.00
906179--906284	28	3.6	29	75	16	103	50	1	0	48	1.12
906205--906255	23	2.2	23	96	0	93	52	3	0	43	1.19
906178--906282	53	2.0	53	83	14	137	49	1	0	48	1.12
906331--906399	19	3.6	18	71	21	52	49	1	1	47	1.19
906366--906438	23	3.1	23	82	5	76	52	2	0	45	1.15
906531--906570	20	2.0	20	90	0	62	60	0	0	40	0.97
908514--908567	22	2.4	23	78	12	67	24	14	3	57	1.54
911707--911742	17	2.1	17	100	0	72	47	22	0	30	1.52
914797--915368	54	10.6	54	89	0	851	35	18	16	30	1.93
928108--928150	2	21.5	2	100	0	86	48	0	0	51	1.00
930737--930851	38	2.9	40	90	6	189	28	10	13	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
930815--930900	25	3.4	25	91	1	136	29	5	13	51	1.65
933108--933132	13	1.9	13	100	0	50	72	0	12	16	1.13
935406--936270	430	2.0	434	96	2	1602	30	12	18	38	1.88
936739--936785	19	2.5	19	96	0	85	21	21	10	46	1.81
937490--937538	25	2.0	25	87	0	71	26	10	14	48	1.75
940368--940421	21	2.6	21	78	0	63	27	27	24	20	1.99
941516--941584	35	2.0	34	86	13	97	28	27	14	28	1.95
956119--956591	108	4.3	108	92	2	734	28	15	27	27	1.96
956119--956591	55	8.7	55	91	3	742	28	15	27	27	1.96
963886--963958	30	2.3	30	84	11	85	53	8	8	30	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14