genome.fa.s8933.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008933.1 Hibiscus syriacus cultivar Beakdansim tig00112249_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2862162

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  8  of  14  ( 1568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1480942--1481480	54	9.9	54	88	0	682	31	19	17	31	1.95
1481227--1481368	27	5.3	27	63	18	89	32	21	18	28	1.96
1481837--1482025	95	2.0	95	93	2	326	25	23	16	34	1.96
1483447--1483471	11	2.3	11	100	0	50	60	16	8	16	1.58
1487615--1487646	2	16.0	2	100	0	64	50	0	0	50	1.00
1488881--1488939	31	2.0	27	87	12	82	47	3	0	49	1.18
1491738--1491838	50	2.0	50	82	0	121	37	11	8	41	1.73
1492878--1493097	90	2.4	92	86	1	273	34	22	12	31	1.91
1492930--1492973	20	2.2	20	87	0	61	27	25	13	34	1.93
1492937--1492974	20	1.9	20	94	0	67	23	26	18	31	1.97
1492878--1493097	92	2.4	91	87	1	316	34	22	12	31	1.91
1493223--1493386	85	1.9	85	93	0	283	24	14	24	36	1.93
1497354--1497910	257	2.2	253	80	13	587	27	10	17	43	1.82
1498310--1498346	18	2.1	18	94	0	65	29	29	5	35	1.80
1499578--1499602	2	12.5	2	100	0	50	52	0	0	48	1.00
1499780--1499837	20	2.9	20	97	0	107	25	36	27	10	1.89
1499824--1499856	14	2.4	14	94	0	57	21	39	33	6	1.78
1499781--1499837	10	5.7	10	80	15	73	26	36	26	10	1.89
1499922--1500004	33	2.6	32	86	7	114	8	36	28	26	1.86
1499986--1500052	14	4.4	14	77	20	71	7	28	38	25	1.83
1499990--1500056	34	2.0	34	100	0	134	8	26	38	25	1.85
1500068--1500143	29	2.6	29	97	0	143	11	25	43	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1504467--1504557	42	2.1	42	78	6	94	24	18	9	47	1.79
1504520--1504630	43	2.7	41	79	9	102	26	19	9	44	1.82
1504537--1504637	41	2.4	42	80	11	118	24	21	5	47	1.73
1508438--1508494	22	2.6	22	88	0	87	31	14	24	29	1.94
1510655--1510703	2	25.5	2	91	8	84	46	0	0	53	1.00
1511437--1511482	19	2.4	19	100	0	92	23	19	17	39	1.92
1511442--1511489	19	2.2	22	82	17	57	27	18	16	37	1.92
1511700--1511770	30	2.4	30	73	4	72	52	4	9	33	1.54
1515290--1515320	2	15.5	2	100	0	62	51	0	0	48	1.00
1521424--1521486	30	2.1	30	88	5	92	42	1	0	55	1.09
1522602--1522641	16	2.5	17	80	19	50	40	7	0	52	1.30
1523008--1523118	44	2.5	44	86	1	161	29	25	18	26	1.98
1526825--1526958	72	1.9	72	91	0	223	20	12	17	48	1.80
1531410--1531501	45	2.0	46	95	2	168	43	10	13	32	1.78
1536248--1536782	266	2.0	266	100	0	1070	30	8	20	39	1.83
1539342--1539767	215	2.0	215	99	0	843	35	13	15	35	1.86
1543576--1543691	21	5.6	21	81	11	132	31	24	22	22	1.99
1543576--1543702	62	2.0	62	93	3	220	31	22	22	23	1.98
1543675--1543729	27	2.0	27	92	0	92	36	18	18	27	1.94
1543727--1543834	21	5.2	21	72	16	82	25	20	24	30	1.98
1543736--1543845	41	2.7	40	77	9	114	24	19	22	33	1.97
1544123--1544164	21	2.0	21	100	0	84	38	23	4	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1544616--1544714	21	4.8	21	80	12	123	31	26	19	23	1.98
1544704--1544755	21	2.5	21	90	3	79	19	21	28	30	1.97
1548584--1548623	3	13.7	3	94	5	73	65	0	0	35	0.93
1548866--1549691	55	15.3	56	81	9	616	25	24	17	33	1.96
1548866--1549691	110	7.7	110	77	9	692	25	24	17	33	1.96
1549067--1549687	55	11.6	54	83	7	666	24	24	18	32	1.97
1549078--1549691	212	2.9	209	84	7	765	24	24	18	32	1.97
1549677--1550008	52	6.4	52	96	0	592	30	25	15	28	1.96
1550004--1550393	55	7.1	55	90	3	626	27	28	14	28	1.96
1550001--1550393	109	3.6	111	95	1	681	27	28	14	28	1.95
1551678--1551725	11	4.3	11	86	5	60	0	8	2	89	0.56
1551673--1551781	8	13.5	8	74	17	66	7	11	0	80	0.94
1551673--1551725	1	53.0	1	76	0	52	1	7	1	88	0.65
1551727--1551780	24	2.3	24	87	6	76	12	12	0	74	1.08
1551721--1551777	30	1.9	29	86	10	80	12	14	0	73	1.09
1551700--1551781	19	4.4	17	75	21	67	8	14	0	76	1.00
1560338--1560369	3	10.7	3	100	0	64	65	0	0	34	0.93
1561937--1562066	69	1.9	69	95	0	233	46	7	9	36	1.65
1565381--1565421	13	2.9	14	85	10	57	41	2	4	51	1.36
1569280--1569334	27	2.0	27	96	0	101	56	10	9	23	1.62
1573822--1573978	60	2.6	60	94	0	278	38	10	11	39	1.75
1576304--1576329	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1577819--1577847	3	9.7	3	100	0	58	68	31	0	0	0.89
1578009--1578033	13	1.9	13	100	0	50	28	16	16	40	1.89
1585825--1585867	15	2.7	16	82	10	52	46	0	0	53	1.00
1585825--1585871	24	2.0	24	83	8	60	46	0	0	53	1.00
1587197--1587222	3	8.7	3	100	0	52	0	34	0	65	0.93
1590829--1590985	21	7.8	20	71	7	75	38	24	17	19	1.93
1590953--1591146	20	9.6	20	81	6	78	35	26	18	19	1.95
1590953--1591145	40	4.8	40	83	3	138	35	26	18	19	1.95
1590953--1591145	60	3.2	60	82	3	244	35	26	18	19	1.95
1591526--1591595	33	2.1	33	91	0	113	12	24	17	45	1.83
1591674--1591751	41	1.9	41	97	0	147	44	16	25	12	1.83
1591675--1591750	21	3.7	21	83	3	109	46	17	25	11	1.82
1592631--1592666	14	2.6	14	95	0	63	33	0	22	44	1.53
1592806--1592852	20	2.4	20	89	3	69	48	17	17	17	1.81
1592774--1592852	19	4.4	19	69	16	69	48	17	18	15	1.82
1592867--1593029	33	4.8	33	72	17	145	14	22	17	45	1.85
1592861--1593082	19	12.7	19	74	19	216	15	22	17	45	1.85
1592861--1593082	53	4.2	53	94	2	362	15	22	17	45	1.85
1592917--1593096	86	2.1	84	85	12	233	13	22	17	46	1.84
1592898--1593096	33	5.7	34	74	17	176	14	22	17	46	1.84
1592897--1593115	53	4.2	53	88	5	227	14	21	18	45	1.84
1595573--1595619	24	2.0	24	87	8	69	38	21	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1596312--1596540	20	11.4	20	84	3	237	19	17	25	37	1.93
1596312--1596521	60	3.5	60	84	2	262	20	17	26	36	1.94
1597066--1597098	13	2.5	13	85	14	50	18	0	6	75	1.00
1597255--1597340	31	2.7	31	87	1	127	37	20	22	19	1.95
1597465--1597527	32	2.0	32	84	6	83	33	28	3	34	1.73
1597487--1597599	59	1.9	60	88	1	174	31	24	6	37	1.80
1597763--1597916	60	2.6	60	77	11	163	40	5	20	32	1.76
1598055--1598105	26	1.9	27	84	11	70	50	0	1	47	1.12
1601082--1601168	20	4.3	20	85	2	113	49	9	19	21	1.76
1601082--1601172	40	2.3	40	90	0	137	48	9	19	21	1.78
1601786--1601830	20	2.5	18	80	19	58	48	11	17	22	1.78
1601959--1602031	36	2.0	36	84	7	94	47	4	1	46	1.30
1601949--1602043	36	2.8	34	75	21	92	48	4	2	45	1.33
1609518--1609853	166	2.0	166	100	0	672	25	19	17	37	1.93
1612266--1612296	15	2.1	15	93	0	53	6	25	38	29	1.81
1618098--1618338	127	1.9	126	88	5	362	36	14	13	36	1.85
1618791--1618824	16	2.0	18	88	11	54	64	5	2	26	1.30
1618942--1618984	21	2.0	21	100	0	86	39	0	13	46	1.44
1618953--1619038	35	2.5	35	82	0	91	37	1	19	41	1.59
1620192--1620291	50	2.0	49	94	1	173	28	16	16	40	1.89
1625434--1625475	19	2.2	19	95	0	75	14	16	4	64	1.45
1625676--1625775	50	2.0	49	98	1	191	26	16	18	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1628206--1628251	19	2.3	21	78	14	53	43	2	0	54	1.12
1628179--1628292	60	2.0	60	88	10	175	44	2	0	52	1.14
1630430--1630454	13	1.9	13	100	0	50	52	0	0	48	1.00
1633596--1633694	50	2.0	48	96	3	180	25	16	18	40	1.90
1634845--1634886	19	2.2	19	100	0	84	14	14	4	66	1.40
1644266--1644309	21	2.0	23	86	8	65	47	4	0	47	1.22
1657516--1657960	244	1.8	244	94	0	782	25	14	29	30	1.95
1666775--1666826	20	2.6	19	90	6	77	26	30	11	30	1.92
1670250--1670275	2	13.0	2	100	0	52	50	0	0	50	1.00
1675616--1675676	30	2.0	30	87	6	88	24	18	11	45	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14