genome.fa.s8955.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008955.1 Hibiscus syriacus cultivar Beakdansim tig00112285_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4658001

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  1  of  23  ( 2731 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1342--1406	19	3.4	19	64	8	51	24	1	15	58	1.46
1401--1435	14	2.6	14	90	4	54	31	0	22	45	1.53
1542--1643	19	5.6	19	84	13	151	44	17	23	14	1.86
1672--1995	19	18.4	19	80	16	394	14	20	17	46	1.83
1650--1967	52	6.0	52	92	5	523	15	21	16	46	1.84
1654--1967	160	2.0	156	93	3	531	14	21	17	46	1.84
1690--1995	33	8.8	33	79	13	271	14	20	17	47	1.83
4473--4519	24	2.0	24	87	8	69	38	21	14	25	1.92
5187--5555	20	18.5	20	86	4	458	20	18	26	34	1.96
5763--5852	38	2.5	37	84	10	114	50	5	2	42	1.38
5782--5852	36	1.9	38	88	5	101	52	4	1	42	1.29
5876--5947	37	2.0	35	81	13	83	41	8	4	45	1.53
10680--10709	11	2.9	10	90	9	51	13	0	0	86	0.57
12932--12980	18	2.7	18	77	3	53	71	4	2	22	1.13
12928--12990	13	5.0	12	74	14	56	73	3	3	20	1.12
12971--13006	19	1.9	18	88	5	54	77	2	5	13	1.05
14284--14350	35	1.9	35	84	3	91	47	4	1	46	1.31
14419--14674	36	7.2	36	74	13	219	42	7	4	44	1.54
14453--14528	27	2.8	27	82	7	82	43	2	6	47	1.43
14301--14521	122	1.8	121	79	8	261	43	4	4	47	1.44
14482--14538	27	2.1	28	83	9	73	40	3	7	49	1.47
14524--14668	73	2.0	74	82	4	177	44	9	3	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15363--16252	84	10.8	84	78	6	694	24	20	25	29	1.99
15355--16277	165	5.6	162	79	7	691	24	20	25	29	1.99
15503--16252	248	3.0	247	91	2	1159	24	20	25	29	1.99
21426--21482	13	4.6	12	83	12	62	75	3	3	17	1.09
21463--21498	19	1.9	18	88	5	54	77	2	5	13	1.05
22816--22884	30	2.3	31	85	7	88	42	4	7	46	1.51
22923--23165	36	6.9	36	73	14	193	44	7	4	44	1.51
22957--23032	27	2.8	27	82	7	82	43	2	6	47	1.43
22986--23042	27	2.1	28	83	9	73	40	3	7	49	1.47
22972--23162	75	2.5	75	81	5	199	45	6	4	43	1.49
23028--23246	75	2.9	76	79	6	203	42	10	4	42	1.58
40467--40502	18	2.1	18	89	5	56	66	2	5	25	1.27
40897--40998	34	2.9	36	89	7	172	27	14	13	44	1.83
41533--42298	105	7.3	105	90	2	1078	22	17	26	33	1.96
42902--43059	68	2.4	65	85	4	208	36	8	22	33	1.84
42902--43295	65	5.8	65	73	12	233	39	10	20	29	1.86
43035--43315	36	8.0	35	76	12	254	40	13	19	26	1.88
42986--43296	138	2.3	137	84	2	410	39	12	19	27	1.88
43071--43259	102	1.9	103	88	2	292	40	13	18	27	1.88
43240--43272	15	2.1	16	88	5	50	39	9	21	30	1.84
43177--43349	36	4.9	35	83	6	125	39	15	20	24	1.91
43795--43830	18	2.0	18	88	0	54	41	30	8	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44246--44300	22	2.5	22	100	0	110	23	12	27	36	1.91
44922--45011	46	2.0	46	82	8	112	1	14	8	75	1.09
44933--45030	23	4.3	22	71	14	65	1	13	8	77	1.03
44953--45004	17	3.2	17	76	15	56	0	15	7	76	0.99
44986--45014	10	3.0	10	95	5	51	0	6	10	82	0.83
46134--46172	8	5.0	8	84	6	53	58	12	17	10	1.61
46134--46172	15	2.5	15	87	4	51	58	12	17	10	1.61
48694--48730	2	19.0	2	94	5	67	51	0	0	48	1.00
49147--49179	2	16.5	2	100	0	66	51	0	0	48	1.00
49234--49276	18	2.5	17	85	7	61	67	2	4	25	1.22
49668--49768	34	2.9	35	88	5	150	29	14	11	43	1.82
50434--50517	36	2.4	36	84	9	102	44	3	5	46	1.45
55138--55441	154	2.0	150	97	2	572	29	15	23	31	1.95
64549--64579	15	2.1	15	93	0	53	51	0	3	45	1.17
66044--66070	6	4.5	6	100	0	54	51	33	0	14	1.43
66540--66570	15	2.1	15	93	0	53	51	0	3	45	1.17
66776--66825	21	2.4	21	96	0	91	30	32	20	18	1.96
66838--67016	21	8.7	21	76	8	172	20	20	24	34	1.97
66829--67017	61	3.1	60	81	7	220	21	20	23	34	1.97
66821--67016	103	1.9	101	94	2	347	20	20	23	35	1.96
67870--68123	42	6.0	42	91	1	368	37	22	19	20	1.94
68178--68214	19	1.9	19	88	0	56	21	18	24	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69255--69291	15	2.5	15	91	4	58	72	0	0	27	0.84
69860--69909	26	1.9	26	87	0	73	44	0	8	48	1.32
71596--71640	18	2.5	18	88	0	72	22	31	13	33	1.92
72027--72063	19	1.9	19	94	0	65	16	16	16	51	1.77
79467--79512	9	4.7	10	76	15	51	30	28	23	17	1.97
89699--89752	28	1.9	28	92	0	90	35	9	1	53	1.44
94001--94052	21	2.5	21	81	3	61	38	19	25	17	1.93
94041--94175	20	6.7	20	74	7	103	34	22	17	25	1.95
94038--94169	61	2.2	61	85	0	174	37	21	15	25	1.93
94343--94386	22	2.0	22	95	0	79	20	45	15	18	1.85
94649--94707	20	3.0	20	84	0	64	16	16	22	44	1.87
94844--94898	25	2.2	24	78	15	58	20	9	18	52	1.71
96027--96071	18	2.5	18	88	0	72	26	44	15	13	1.83
96553--96598	20	2.3	20	84	0	56	36	23	21	17	1.94
96564--96619	20	2.8	20	81	2	69	39	21	23	16	1.92
96592--96688	19	5.6	19	71	22	97	45	19	20	14	1.85
96608--96666	14	3.9	14	74	20	55	49	20	16	13	1.80
96592--96685	33	2.8	33	96	0	170	45	19	20	14	1.85
96700--96789	14	5.8	14	71	21	72	12	17	22	47	1.80
96695--96806	33	3.4	33	93	1	190	12	18	22	46	1.82
96716--96848	20	7.5	18	71	19	84	14	20	21	43	1.87
97212--97299	41	2.1	41	82	2	113	21	42	14	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98701--98739	14	2.8	14	84	0	51	35	0	17	46	1.49
98876--98943	19	3.8	19	81	14	92	47	16	22	14	1.82
98962--99017	20	2.8	20	91	0	76	16	21	21	41	1.90
99230--99280	20	2.5	20	74	0	66	25	17	19	37	1.94
100933--101063	19	7.7	19	66	23	94	43	19	22	13	1.87
100933--101059	33	3.8	33	89	4	202	43	19	22	14	1.87
100934--101066	66	2.0	66	97	0	248	42	19	22	15	1.89
101074--101130	14	3.7	14	70	20	51	8	22	22	45	1.80
101059--101148	33	2.7	33	89	0	135	14	21	20	44	1.86
101255--101291	14	2.6	14	91	0	65	45	24	0	29	1.53
102686--102765	42	1.9	42	84	0	106	22	17	38	21	1.93
102987--103171	91	2.0	90	90	6	291	47	18	12	21	1.81
104858--104979	20	6.8	19	69	20	93	45	19	22	11	1.82
104858--104979	33	3.4	36	86	7	130	45	19	22	11	1.82
104907--104962	14	3.6	14	74	21	58	42	23	25	8	1.82
104883--104979	33	2.9	33	93	1	158	44	21	23	10	1.83
104980--105024	19	2.4	19	88	0	63	8	11	26	53	1.65
105598--105651	20	2.6	21	82	2	65	18	20	20	40	1.91
105641--105713	21	3.5	21	79	3	76	36	17	21	23	1.94
105726--105778	21	2.5	21	96	0	97	24	22	13	39	1.90
105785--105837	21	2.5	22	81	6	74	33	18	26	20	1.96
107233--107271	20	1.9	21	89	5	62	33	33	15	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107245--107283	19	2.0	20	85	5	53	35	33	15	15	1.89
112326--112474	42	3.5	41	78	10	138	31	15	20	32	1.94
112383--112467	45	1.9	43	88	4	125	31	18	16	32	1.94
114469--114549	42	1.9	42	92	0	135	46	19	8	24	1.78
114467--114563	42	2.3	41	85	5	131	48	16	12	22	1.79
114805--115105	45	6.7	45	80	5	243	36	8	13	41	1.75
115288--115445	58	2.7	58	80	7	151	43	6	8	41	1.63
115477--115679	111	1.8	111	81	8	252	37	7	13	40	1.73
116471--116556	39	2.2	39	97	0	163	45	17	15	22	1.85
126514--126556	21	2.0	21	86	0	59	39	0	2	58	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23