genome.fa.s8955.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008955.1 Hibiscus syriacus cultivar Beakdansim tig00112285_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4658001

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  21  of  23  ( 2731 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4133908--4134424	51	9.8	51	83	9	522	29	15	25	29	1.96
4137158--4137183	10	2.6	10	100	0	52	23	7	46	23	1.78
4137488--4137578	20	4.9	20	68	20	72	34	5	15	45	1.69
4137487--4137634	53	2.8	52	95	3	271	33	5	13	47	1.65
4137593--4137632	20	2.0	20	95	0	71	37	5	12	45	1.64
4142873--4142924	26	2.0	26	100	0	104	50	3	19	26	1.65
4145441--4145488	19	2.5	19	89	3	69	35	29	14	20	1.93
4146401--4146454	24	2.2	24	83	0	72	20	16	20	42	1.89
4148713--4148747	18	1.9	18	88	0	52	57	20	2	20	1.54
4148805--4149087	140	2.0	140	96	0	521	27	13	15	43	1.84
4149058--4149243	20	9.6	20	80	7	206	32	23	17	26	1.97
4149233--4149290	20	2.9	21	82	10	77	12	17	27	43	1.84
4149365--4149473	36	3.3	36	69	21	119	53	15	3	27	1.59
4149342--4149502	63	2.5	64	91	7	254	50	16	3	28	1.62
4150169--4150290	42	2.9	42	78	7	131	23	18	35	22	1.96
4150169--4150283	21	5.5	21	69	4	79	22	19	35	22	1.96
4150810--4150855	20	2.3	20	88	7	67	32	26	23	17	1.97
4151613--4151868	128	2.0	128	98	0	494	19	25	31	23	1.98
4154250--4154288	20	2.0	20	84	0	51	23	7	23	46	1.78
4154442--4154524	21	3.9	22	76	13	75	15	25	34	24	1.95
4160283--4160539	130	2.0	128	96	2	471	19	25	31	23	1.98
4160764--4160842	33	2.4	34	84	2	106	16	20	18	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4163249--4163291	22	2.0	22	100	0	86	18	18	44	18	1.87
4163466--4163535	20	3.5	20	96	0	122	28	21	25	24	1.99
4163603--4163639	19	1.9	19	94	0	65	21	16	29	32	1.95
4168999--4169040	2	21.0	2	100	0	84	50	0	50	0	1.00
4176926--4176996	36	1.9	37	91	2	117	38	5	2	53	1.39
4177408--4177440	16	2.1	16	100	0	66	57	24	12	6	1.57
4177506--4177580	10	7.7	10	69	21	61	57	21	12	9	1.62
4177510--4177574	16	4.1	16	95	0	121	56	23	12	7	1.61
4178322--4178377	14	4.3	14	80	17	66	53	25	12	8	1.67
4178302--4178376	24	3.1	24	88	3	98	56	21	10	12	1.66
4178700--4178783	33	2.5	34	96	1	152	40	0	0	59	0.97
4178776--4178813	20	1.9	20	89	10	60	18	10	31	39	1.85
4179731--4179765	2	17.5	2	100	0	70	51	0	0	48	1.00
4183201--4183250	13	3.8	13	75	15	57	50	12	4	34	1.58
4183236--4183334	33	3.0	33	92	1	155	45	14	7	33	1.71
4183329--4183368	21	1.9	21	94	0	71	47	7	15	30	1.72
4188165--4188227	33	1.9	33	83	0	81	17	58	6	17	1.58
4191556--4191607	2	26.5	2	96	3	97	50	0	0	50	1.00
4191858--4191901	2	22.0	2	100	0	88	50	0	0	50	1.00
4197558--4197666	48	2.2	50	82	8	134	20	29	23	26	1.99
4198536--4198622	35	2.5	34	80	12	97	55	10	8	26	1.61
4198707--4198739	17	2.0	17	88	5	50	75	6	0	18	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4199573--4199624	22	2.4	22	86	0	77	21	25	19	34	1.96
4200966--4201006	18	2.3	18	87	4	57	60	2	7	29	1.36
4201161--4201303	51	2.8	51	81	5	139	23	26	29	20	1.99
4208895--4208956	20	3.0	20	68	15	54	12	24	37	25	1.91
4208916--4208953	20	1.9	20	88	0	58	15	26	36	21	1.93
4213609--4213642	16	2.3	15	90	10	52	23	0	44	32	1.54
4220002--4220398	197	2.0	199	97	2	755	32	15	23	28	1.95
4220504--4220554	26	2.0	26	100	0	102	27	27	19	25	1.99
4226999--4227189	105	1.8	105	79	6	226	27	27	13	31	1.94
4229450--4229489	20	2.0	20	90	0	62	25	32	7	35	1.84
4230478--4230504	14	1.9	14	100	0	54	25	0	7	66	1.17
4235701--4235763	31	2.0	31	93	0	108	38	9	25	26	1.87
4242518--4242668	78	1.9	78	83	0	194	35	12	19	32	1.89
4243226--4243259	16	2.1	16	94	0	59	32	8	26	32	1.87
4251050--4251089	17	2.3	18	91	4	64	20	47	22	10	1.79
4251091--4251257	29	5.9	28	79	6	167	34	4	23	36	1.76
4251091--4251251	58	2.8	58	83	4	193	34	4	24	36	1.77
4258151--4258283	63	2.1	63	88	0	194	37	34	7	20	1.81
4258077--4258220	75	1.9	76	86	4	209	34	36	9	18	1.84
4260309--4260417	45	2.4	46	87	4	159	26	22	19	31	1.98
4260638--4260676	17	2.3	17	95	0	69	66	17	7	7	1.40
4262558--4262616	24	2.5	24	94	0	100	40	6	18	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4263534--4263585	22	2.2	25	76	23	74	25	13	19	42	1.87
4263541--4263585	22	2.0	22	100	0	90	26	13	20	40	1.89
4266233--4266314	23	3.6	23	75	11	89	24	26	23	25	2.00
4266989--4267067	30	2.7	30	90	5	110	31	30	13	24	1.94
4267004--4267067	30	2.1	30	100	0	128	29	31	15	23	1.95
4267907--4267950	21	2.1	21	86	0	61	6	36	18	38	1.77
4271859--4271915	3	19.0	3	88	0	87	38	0	0	61	0.96
4278302--4278467	83	2.0	83	100	0	332	31	16	18	33	1.93
4278478--4278687	108	2.0	102	94	5	366	43	16	18	21	1.87
4284604--4284689	1	86.0	1	74	0	64	86	0	13	0	0.58
4284596--4284689	10	9.2	10	80	10	102	85	1	13	0	0.66
4284594--4284686	5	18.2	5	75	16	68	83	1	15	0	0.69
4284594--4284679	42	2.0	43	90	2	138	83	1	15	0	0.70
4285684--4286069	94	4.1	94	89	5	586	30	15	20	34	1.93
4286878--4287552	113	6.0	112	87	3	797	37	14	18	29	1.91
4286876--4287552	229	3.0	225	84	4	864	36	14	18	29	1.91
4286878--4287551	342	2.0	334	85	4	895	37	14	18	29	1.91
4287472--4287757	124	2.4	119	82	8	330	41	15	18	24	1.89
4287903--4287947	3	15.0	3	100	0	90	33	0	0	66	0.92
4293932--4294036	5	21.0	5	99	0	201	40	0	20	39	1.52
4295462--4295494	2	16.5	2	100	0	66	51	0	0	48	1.00
4296014--4296085	37	1.9	37	82	0	90	30	8	9	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4297374--4297399	7	3.7	7	100	0	52	88	0	0	11	0.52
4302979--4303028	18	2.8	18	84	0	64	24	4	34	38	1.74
4314624--4314672	2	24.5	2	100	0	98	48	0	0	51	1.00
4314922--4314958	19	1.9	19	88	0	56	32	27	16	24	1.96
4315045--4315155	41	2.7	41	88	2	134	31	24	21	22	1.98
4315086--4315281	61	3.2	61	85	4	236	29	25	20	23	1.99
4315065--4315312	102	2.4	102	93	0	424	29	25	20	23	1.99
4315147--4315257	41	2.7	41	92	0	177	30	26	20	22	1.98
4315188--4315312	61	2.0	61	93	0	214	29	25	20	24	1.99
4318397--4318431	18	1.9	18	94	0	61	54	25	2	17	1.57
4318612--4318940	20	17.4	20	76	12	266	35	23	19	21	1.96
4318612--4318926	54	5.6	54	79	7	283	35	23	19	21	1.96
4318633--4318840	74	2.8	73	76	9	224	35	23	20	21	1.96
4318805--4318990	73	2.5	73	84	3	212	37	21	19	22	1.95
4319081--4319160	30	2.4	34	80	20	114	55	15	3	26	1.57
4319096--4319161	30	2.2	30	100	0	132	54	13	3	28	1.54
4320556--4320658	42	2.5	43	74	6	104	22	19	34	23	1.96
4321066--4321109	20	2.2	20	100	0	88	52	22	11	13	1.72
4321115--4321187	20	3.7	20	90	0	110	32	20	20	26	1.97
4321096--4321184	40	2.2	40	89	0	133	34	21	19	24	1.96
4321244--4321440	54	3.6	54	87	2	297	20	19	21	38	1.93
4321339--4321440	20	5.4	20	73	17	83	18	20	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4321559--4321620	31	2.0	31	87	9	90	51	17	8	22	1.71
4323428--4323484	21	2.8	21	89	2	80	50	21	15	12	1.76
4323911--4323968	22	2.7	22	84	5	84	24	10	43	22	1.84
4324224--4324275	19	2.7	19	84	3	68	23	17	28	30	1.97
4324624--4324843	78	2.8	77	84	3	280	19	29	24	27	1.98
4331287--4331323	18	2.1	18	100	0	74	37	21	5	35	1.77
4336685--4336813	55	2.3	55	89	2	188	44	11	22	21	1.84
4337476--4337626	72	2.1	72	93	0	257	37	13	26	23	1.91
4340953--4341180	125	1.8	125	81	1	287	32	15	25	26	1.96
4342372--4342485	37	3.1	37	82	5	133	34	21	16	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23